FI:IV110 Bionformatics project I

IV110 Bionformatics project I

Faculty of Informatics
Autumn 2019

Extent and Intensity

1/1/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).

Teacher(s)

Guaranteed by

doc. Ing. Matej Lexa, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics

Timetable

Thu 18:00–19:50 B204

Prerequisites

IV107 Bioinformatics I plus elementary programming skills (e.g. UNIX + C/C++/Java + Perl/Python) or teacher's consent

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

Image Processing and Analysis (programme FI, N-VIZ)
Applied Informatics (programme FI, B-AP)
Applied Informatics (programme FI, N-AP)
Information Technology Security (eng.) (programme FI, N-IN)
Information Technology Security (programme FI, N-IN)
Bioinformatics and systems biology (programme FI, N-UIZD)
Bioinformatics (programme FI, B-AP)
Bioinformatics (programme FI, N-AP)
Computer Games Development (programme FI, N-VIZ_A)
Computer Graphics and Visualisation (programme FI, N-VIZ_A)
Computer Networks and Communications (programme FI, N-PSKB_A)
Cybersecurity Management (programme FI, N-RSSS_A)
Formal analysis of computer systems (programme FI, N-TEI)
Graphic design (programme FI, N-VIZ)
Graphic Design (programme FI, N-VIZ_A)
Hardware Systems (programme FI, N-PSKB_A)
Hardware systems (programme FI, N-PSKB)
Image Processing and Analysis (programme FI, N-VIZ_A)
Information security (programme FI, N-PSKB)
Information Systems (programme FI, N-IN)
Informatics with another discipline (programme FI, B-EB)
Informatics with another discipline (programme FI, B-FY)
Informatics with another discipline (programme FI, B-IO)
Informatics with another discipline (programme FI, B-MA)
Informatics with another discipline (programme FI, B-TV)
Informatics (eng.) (programme FI, D-IN4)
Informatics (programme FI, B-INF) (2)
Informatics (programme FI, D-IN4)
Informatics in education (programme FI, B-IVV) (2)
Information Security (programme FI, N-PSKB_A)
Quantum and Other Nonclassical Computational Models (programme FI, N-TEI)
Mathematical Informatics (programme FI, B-IN)
Parallel and Distributed Systems (programme FI, B-IN)
Parallel and Distributed Systems (programme FI, N-IN)
Computer graphics and visualisation (programme FI, N-VIZ)
Computer Graphics and Image Processing (programme FI, B-IN)
Computer Graphics (programme FI, N-IN)
Computer Networks and Communication (programme FI, B-IN)
Computer Networks and Communication (programme FI, N-IN)
Computer Networks and Communications (programme FI, N-PSKB)
Computer Systems and Technologies (eng.) (programme FI, D-IN4)
Computer Systems and Technologies (programme FI, D-IN4)
Computer Systems and Data Processing (programme FI, B-IN)
Computer Systems (programme FI, N-IN)
Principles of programming languages (programme FI, N-TEI)
Programming and development (programme FI, B-PVA)
Embedded Systems (eng.) (programme FI, N-IN)
Programmable Technical Structures (programme FI, B-IN)
Embedded Systems (programme FI, N-IN)
Cybersecurity management (programme FI, N-RSSS)
Services development management (programme FI, N-RSSS)
Software Systems Development Management (programme FI, N-RSSS)
Services Development Management (programme FI, N-RSSS_A)
Service Science, Management and Engineering (eng.) (programme FI, N-AP)
Service Science, Management and Engineering (programme FI, N-AP)
Social Informatics (programme FI, B-AP)
Software Systems Development Management (programme FI, N-RSSS_A)
Software Systems (programme FI, N-PSKB_A)
Software systems (programme FI, N-PSKB)
Machine learning and artificial intelligence (programme FI, N-UIZD)
Theoretical Informatics (programme FI, N-IN)
Teacher of Informatics and IT administrator (programme FI, N-UCI)
Informatics for secondary school teachers (programme FI, N-UCI) (2)
Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
Computer Games Development (programme FI, N-VIZ)
Processing and analysis of large-scale data (programme FI, N-UIZD)
Image Processing (programme FI, N-AP)
Natural language processing (programme FI, N-UIZD)

Course objectives

In this course the students will:
be able to select appropriate bioinformatic tools for a given problem
be able to carry out independent analysis of bioinformatic data
present their results to their colleagues

Learning outcomes

Syllabus

Discussion of interesting problems to solve
Preparation of student proposals
Programming phase
Student mini-conference

Literature

ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info

Teaching methods

student projects, their presentation and class discussion

Assessment methods

writen project proposal and summary of results, oral presentation

Language of instruction

Czech

Follow-Up Courses

Further Comments

Study Materials
The course is taught annually.

The course is also listed under the following terms Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, Autumn 2017, Autumn 2018, Autumn 2020, Autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.

Enrolment Statistics (Autumn 2019, recent)
Permalink: https://is.muni.cz/course/fi/autumn2019/IV110

FI:IV110 Bionformatics project I - Course Information

IV110 Bionformatics project I

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