FI:IV114 Bioinf and SB Project - Course Information

IV114 Bioinformatics and Systems Biology Project

Extent and Intensity

0/1/1. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).

Teacher(s)

doc. Ing. Matej Lexa, Ph.D. (lecturer)

Guaranteed by

doc. Ing. Matej Lexa, Ph.D.
Department of Machine Learning and Data Processing – Faculty of Informatics
Supplier department: Department of Machine Learning and Data Processing – Faculty of Informatics

Timetable

Thu 18:00–19:50 B204

Prerequisites

The students should have finished IV107 Bioinformatics I and have elementary programming skills in any programming language/environment (optimally UNIX with C/C++/Java and Perl/Python) or consent of the lecturer

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• Image Processing and Analysis (programme FI, N-VIZ)
• Applied Informatics (programme FI, B-AP)
• Applied Informatics (programme FI, N-AP)
• Information Technology Security (eng.) (programme FI, N-IN)
• Information Technology Security (programme FI, N-IN)
• Bioinformatics and systems biology (programme FI, N-UIZD)
• Bioinformatics (programme FI, B-AP)
• Bioinformatics (programme FI, N-AP)
• Computer Games Development (programme FI, N-VIZ_A)
• Computer Graphics and Visualisation (programme FI, N-VIZ_A)
• Computer Networks and Communications (programme FI, N-PSKB_A)
• Cybersecurity Management (programme FI, N-RSSS_A)
• Formal analysis of computer systems (programme FI, N-TEI)
• Graphic design (programme FI, N-VIZ)
• Graphic Design (programme FI, N-VIZ_A)
• Hardware Systems (programme FI, N-PSKB_A)
• Hardware systems (programme FI, N-PSKB)
• Image Processing and Analysis (programme FI, N-VIZ_A)
• Information security (programme FI, N-PSKB)
• Information Systems (programme FI, N-IN)
• Informatics with another discipline (programme FI, B-EB)
• Informatics with another discipline (programme FI, B-FY)
• Informatics with another discipline (programme FI, B-GE)
• Informatics with another discipline (programme FI, B-GK)
• Informatics with another discipline (programme FI, B-CH)
• Informatics with another discipline (programme FI, B-IO)
• Informatics with another discipline (programme FI, B-MA)
• Informatics with another discipline (programme FI, B-TV)
• Informatics (eng.) (programme FI, D-IN4)
• Informatics (programme FI, B-INF) (2)
• Informatics (programme FI, D-IN4)
• Informatics in education (programme FI, B-IVV) (2)
• Information Security (programme FI, N-PSKB_A)
• Quantum and Other Nonclassical Computational Models (programme FI, N-TEI)
• Mathematical Informatics (programme FI, B-IN)
• Parallel and Distributed Systems (programme FI, B-IN)
• Parallel and Distributed Systems (programme FI, N-IN)
• Computer graphics and visualisation (programme FI, N-VIZ)
• Computer Graphics and Image Processing (programme FI, B-IN)
• Computer Graphics (programme FI, N-IN)
• Computer Networks and Communication (programme FI, B-IN)
• Computer Networks and Communication (programme FI, N-IN)
• Computer Networks and Communications (programme FI, N-PSKB)
• Computer Systems and Technologies (eng.) (programme FI, D-IN4)
• Computer Systems and Technologies (programme FI, D-IN4)
• Computer Systems and Data Processing (programme FI, B-IN)
• Computer Systems (programme FI, N-IN)
• Principles of programming languages (programme FI, N-TEI)
• Programming and development (programme FI, B-PVA)
• Embedded Systems (eng.) (programme FI, N-IN)
• Programmable Technical Structures (programme FI, B-IN)
• Embedded Systems (programme FI, N-IN)
• Cybersecurity management (programme FI, N-RSSS)
• Services development management (programme FI, N-RSSS)
• Software Systems Development Management (programme FI, N-RSSS)
• Services Development Management (programme FI, N-RSSS_A)
• Service Science, Management and Engineering (eng.) (programme FI, N-AP)
• Service Science, Management and Engineering (programme FI, N-AP)
• Social Informatics (programme FI, B-AP)
• Software Systems Development Management (programme FI, N-RSSS_A)
• Software Systems (programme FI, N-PSKB_A)
• Software systems (programme FI, N-PSKB)
• Machine learning and artificial intelligence (programme FI, N-UIZD)
• Theoretical Informatics (programme FI, N-IN)
• Teacher of Informatics and IT administrator (programme FI, N-UCI)
• Informatics for secondary school teachers (programme FI, N-UCI) (2)
• Upper Secondary School Teacher Training in Informatics (programme FI, N-SS) (2)
• Artificial Intelligence and Natural Language Processing (programme FI, B-IN)
• Artificial Intelligence and Natural Language Processing (programme FI, N-IN)
• Computer Games Development (programme FI, N-VIZ)
• Processing and analysis of large-scale data (programme FI, N-UIZD)
• Image Processing (programme FI, N-AP)
• Natural language processing (programme FI, N-UIZD)

Course objectives

In this course the students will:
be able to select appropriate bioinformatic tools for a given problem
be able to carry out independent analysis of bioinformatic data
present their results to their colleagues

Learning outcomes

In this course the students will:
be able to select appropriate bioinformatic tools for a given problem
be able to carry out independent analysis of bioinformatic data
present their results to their colleagues

Syllabus

• Discussion of interesting problems to solve
• Preparation of student proposals
• Programming phase
• Student mini-conference

Literature

• ZVELEBIL, Marketa J. and Jeremy O. BAUM. Understanding bioinformatics. New York, N.Y.: Garland Science, 2008, xxiii, 772. ISBN 9780815340249. info

Teaching methods

student projects, their presentation and class discussion

Assessment methods

written project proposal and summary, oral presentation

Language of instruction

Czech

Further Comments

Study Materials
The course is taught annually.

• Enrolment Statistics (Autumn 2019, recent)
  
• Permalink: https://is.muni.cz/course/fi/autumn2019/IV114