;  SAM: prettyalign v1.4 (July 11, 1996) compiled 07/18/96_13:40:09.
;  SAM:  Sequence Alignment and Modeling Software System
;  (c) 1992-1996 Regents of the University of California, Santa Cruz
;  http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ------ Citations ------
; A. Krogh et al., Hidden Markov models in computational biology:
;   Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;   Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; -----------------------
;       10        20        30        40        50        60        70
;        |         |         |         |         |         |         |
;       80 
;        | 
>TRNA1
GGGGAUGUAGCUCAGUGGUA---------GAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCGAUCCC
CGGCAUCUCCA
>TRNA2
GCGGCCGUCGUCUAGUCUGGA-----UUAGGACGCUGGCCUCCCAAGCCAGCAAUCCCGGGUUCGAAUCC
CGGCGGCCGCA
>TRNA3
GGCCCUGUGGCUAGCUGGUCAAAGCGCCUGUCUAGUAAACAG---GAGAUCCUGGGUUCGAAUCCCAGCG
GG--GCCUCCA
>TRNA4
GGGCGAAUAGU----GUCAGCGGGAGCACACCAGACUUGCAAUCUGGUAGGGAGGGUUCGAGUCCCUCUU
UGUCCAC--CA
>TRNA5
GCCGGGAUAGCUCAGUUGGUAGAGCAGAGGACUG--------AAAAUCCUCGUGUCACCAGUUCAAAUCU
GGUUCCUGGCA
>TRNA6
GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGUCGACCCGCUAGGCUCC
AC-------CA
>TRNA7
GGGCACAUGGCGCAGUUGGUAGCGCGCUUCCCUUGCAAGGAA--------GAGGUCAUCGGUUCGAUUCC
GGUUGCGUCCA
>TRNA8
GGGCCCGUGGCCUAGUCUGGAUAC--GGCACCGGCCUUCUAAGCCGGGGAUCGGGGGUUCAAAUCCCUCC
GGGUC----CG
>TRNA9
CGGCACGUAGC----GCAGCCUGGUAGCGCACCGUCCUGGGGUUGCGGGGGUCGGAGGUUCAAAUCCUCU
CGUGCCGACCA
>TRNA10
UCCGUCGUAGUCUAGGUGGUU---AGGAUACUCGGCUUUCACCCGAGAGACCCGGGUUCAAGUCCCGGCG
ACGGAAC--CA


