Nástroje pro zpracování a grafickou úpravu sekvenčních dat
[USEMAP]
Jaro 2015

ColorSeq
http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_color.html
Vyznačte v sekvenci všechny tryptofany, tyrosiny a cysteiny.

Protein Colourer
http://www.ebi.ac.uk/cgi-bin/proteincol/ProteinColourer.pl
LENKAPEPAMARTINWALTERGITAADAMAGATAAGNESALANCECILCEDRIKDALIDADANAEMILIEERIKEVAFILIPGERHARDHERMINAKAR
ELKATERINAMARLENAMARKETAVALDEMARAVLASTIMILA
Obarvěte si sekvenci...

Filter Protein/DNA
http://www.bioinformatics.org/sms2/filter_protein.html
http://www.bioinformatics.org/sms2/filter_dna.html

Three to One
http://www.bioinformatics.org/sms2/three_to_one.html


One to Three
http://www.bioinformatics.org/sms2/one_to_three.html


Three- / one-letter code
http://molbiol.ru/eng/scripts/01_17.html


GGGGACCGCCGCACCGUUAUCAGCCGUCAUAUCGACUACCGGAGGGCGAGACAGACGAUCGGUGUUAGCUACUUACAUGGCGUUCGAGAGUUGCUACGC
GGUAGGCUUGACUCCAACUACAACGGAACGUGAAUCUCAUUUUGGGUUUUAGAUAUUGGGGUCGAAUCCAGCGAAAGCAUUAUUAAGGGGCUCCGUAAC
CUGGAUGGAACAUUGAGGUCUUUCAGUUCAACGAAUCCUGGAUAGGGCGCAACUCCCACUACACCAACUUUAACCUCACAUUACCCUGUUCUUAUUGCG
CAA
Reverse Transcription and Translation Tool
http://www.attotron.com/cybertory/analysis/trans.htm
Pohrajte si s RNA...

Reverse Translate
http://www.bioinformatics.org/sms2/rev_trans.html
LENKAPEPAMARTINWALTERGITAADAMAGATAAGNESALANCECILCEDRIKDALIDADANAEMILIEERIKEVAFILIPGERHARDHERMINAKAR
ELKATERINAMARLENAMARKETAVALDEMARAVLASTIMILA
Přeložte si protein...

LENKAPEPAMARTINWALTERGITAADAMAGATAAGNESALANCECILCEDRIKDALIDADANAEMILIEERIKEVAFILIPGERHARDHERMINAKAR
ELKATERINAMARLENAMARKETAVALDEMARAVLASTIMILA
Reverse Translate
http://www.bioinformatics.org/sms2/rev_trans.html
Přeložte si protein...

PepDraw
http://www.tulane.edu/~biochem/WW/PepDraw/index.html
Kolik aminokyselin program zvládne?

TOPO2
http://www.sacs.ucsf.edu/TOPO2/


MyDomains
http://prosite.expasy.org/mydomains


PLLSASIVSAPVVTSETYVDIPGLYLDVAKAGIRDGKLQVILNVPTPYATGNNFPGIYFAIATNQGVVADGCFTYSSKVPESTGRMPFTLVATIDVGSG
VTFVKGQWKSVRGSAMHIDSYASLSAIWGTAAPSSQGSGNQGAETGGTGAGNIGGGGERDGTFNLPPHIKFGVTALTHAANDQTIDIYIDDDPKPAATF
KGAGAQDQNLGTKVLDSGNGRVRVIVMANGRPSRLGSRQVDIFKKSYFGIIGSEDGADDDYNDGIVFLNWPLG
271 aa, 1-129 TNF like domain, 157-271 Lectin domain,
189-191 vazebné místo, 256-258 vazebné místo

draw



draw draw
Vytvořte „doménové schéma“ proteinu.