E2020: Soft-Skills 2 : Information Literacy


Ressources, a non-exaustive list of link for database and useful link


Database of information and articles:

scifinder.cas.org

reaxys.com/#/search/quick

chemspider.com

isiknowledge.com

pubchem.ncbi.nlm.nih.gov

ncbi.nlm.nih.gov

http://polysearch.ca/ (biomedical text mining to discover potential associations between various
types of biomedical entities)

https://www.storkapp.me/ (alerts for papers based on keywords)



Spectra database

webbook.nist.gov/chemistry

sdbs.db.aist.go.jp/sdbs/cgi-bin/direct_frame_top.cgi

echa.europa.eu/home (European Chemical agency)

MassBank (jp, eu, na) – mass spectra



Database of chemical manufacturers and sellers (just a few examples):

sigmaaldrich.com

acros.com

tcichemicals.com/en/cz

https://www.emolecules.com/ (Structure searching)

https://zinc.docking.org/ (Commercially available compound database)



Database of biological structures and biomolecules:

www.uniprot.org

web.expasy.org/protparam

reactome.org

brenda-enzymes.or

proteomicsdb.org

research.bioinformatics.udel.edu/iptmnet

pfam.xfam.org

blast.ncbi.nlm.nih.gov/Blast.cgi

ncbi.nlm.nih.gov/genbank

blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins

https://www.vmh.life/ (Virtual Metabolic Human – model human physiology)

https://www.wishartlab.com/web_servers (Various databases mostly for metabolites)

https://www.ebi.ac.uk/chembl/ (Curated database of biomolecules with drug-like activity)

https://www.ebi.ac.uk/chebi/ (Curated database of chemicals of biological interest)

https://biocyc.org/ (organism specific databases)

https://www.genome.jp/kegg/ (Molecular pathway maps)

https://www.proteinatlas.org/ (Human protein atlas)

https://www.ebi.ac.uk/gxa/home (Transcriptome atlas)

https://www.lipidmaps.org/ (Lipid database)

https://www.pherobase.com/database/compound/compounds-index.php (Semiochemical database)

https://www.omicsdi.org/ (Multi-omics database compilation)

https://metabolicatlas.org/ (Model species genome-scale metabolic models)

http://www-metrabase.ch.cam.ac.uk/metrabaseui/? (Transporter database)



Environmental database

comptox.epa.gov/dashboard

aopwiki.org

https://go.drugbank.com/ (Drug database)

http://www.t3db.ca/ (Toxin database)

https://ec.europa.eu/food/plants/pesticides/eu-pesticides-database_en (EU pesticide database)

http://exposome-explorer.iarc.fr/ (Environmental risk factors for disease database)

https://www.genasis.cz/ (POPs database)

https://envipath.org/ (Environmental contaminant transformation database)

https://www.echemportal.org/echemportal/ (EU chemical portal)

https://pesticidecompendium.bcpc.org/ (Pesticide common name database)

https://www.bindingdb.org/bind/index.jsp (Experimental ligand binding database)

https://cfpub.epa.gov/ecotox/ (Environmental chemical toxicity database)

https://risctox.istas.net/en/ (Toxic substance database)



Magazines database

pubs.acs.org

pubs.rsc.org

onlinelibrary.wiley.com/action/showPublications?PubType=journal

sciencedirect.com

… and many others


Patent databases

worldwide.espacenet.com

patft.uspto.gov

jpo.go.jp/e; j-platpat.inpit.go.jp

patentscope.wipo.int/search/en/search.jsf

isdv.upv.cz/webapp/!resdb.pta.frm