01 - Organization - Analysis of Nontarget MS Data - 20.02.2024
General Information
Please see the respective section in the slides.
While I always appreciate you approaching me directly with any questions/concerns/issues regarding the class, if you prefer to raise anything anonymously, feel free to use the anonymous class feedback form here.
The recordings of the lecture are available in the study materials. Please send me an email in case they are not accessible or you have any questions.
Agenda
| Date | Teacher | Class | Topic |
| 20.02.2024 | Helge Hecht | Lecture | Introduction |
| 27.02.2024 | Thomas Contini | Lecture | Instrumental Analysis – Chromatography, Mass Spectrometry & Acquisition methods |
| 05.03.2024 | Elliott Price | Lecture | Introduction to -omics |
| 12.03. | Helge Hecht | Lecture | Introduction to untargeted mass spectrometry data & pre-processing |
| 19.03. | Helge Hecht | Practical Lecture | Getting started with Galaxy, exploring the data and pre-processing Feature detection from instrumental data |
| 26.03. | No class | ||
| 02.04. | No class | ||
| 09.04 | Thomas Contini | Practical | Feature detection from instrumental data |
| 16.04. | Helge Hecht | Lecture | From features to spectra (deconvolution) |
| 23.04. | Helge Hecht | Practical | From features to spectra (deconvolution) |
| 30.04. | Helge Hecht | Lecture | Annotation – from spectra to compounds |
| 07.05. | Helge Hecht | Practical | Annotation – from spectra to compounds |
| 14.05. | TBA | TBA | |
| 21.05. | TBA | TBA |
Due to conflicts in the schedule, we will start the classes at 10:15 instead of 10 and finish around 11:50.
Introduction
In this course we are covering the theoretical concepts, methods and algorithms used for processing of untargeted mass spectrometry data and we are applying tools implementing those methods to process data using Galaxy.
During the course, we will go through the following larger modules and the individual steps. In the practicals, we apply those methods by using software packages implementing those algorithms using the Galaxy platform.