Exercise – RNAseqWe will work in metacentrum!
6 samples :
controls, KD1 and KD2
Illumina HiSeq 1000
All the codes will be available on IS in practicals/RNAseq
Files for the exercise:
00_preparation.sh
01_initial_qc.sh
02_preprocess_PE.sh
03_prepare_index_STAR.sh
04_alignment_STAR_PE.sh
05_gene_counts.sh
06_alignment_qc.sh
07_DE.R