Pokročilé metody bioinformatiky
GRAPH ALGORITHMS AND DATA STRUCTURES 20. 3. 2023
GFA format https://github.com/GFA-spec/GFA-spec
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EXERCISE:
MINGRAPH https://github.com/lh3/minigraph
GFATOOLS https://github.com/lh3/gfatools
PGGB pipeline https://github.com/pangenome/pggb
WFMASH https://github.com/waveygang/wfmash
SEQWISH https://github.com/ekg/seqwish
SMOOTHXG https://github.com/pangenome/smoothxg
GFAFFIX https://github.com/marschall-lab/GFAffix