B5000 PC Applications in Molecular Biology and Genetics

Faculty of Science
Autumn 2001
Extent and Intensity
0/3/0. 4 credit(s). Recommended Type of Completion: graded credit. Other types of completion: z (credit).
Teacher(s)
RNDr. Ing. Karel Chroust, Ph.D. (seminar tutor)
prof. RNDr. Roman Pantůček, Ph.D. (seminar tutor)
doc. RNDr. Vladislava Růžičková, CSc. (seminar tutor)
Guaranteed by
prof. RNDr. Roman Pantůček, Ph.D.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Roman Pantůček, Ph.D.
Prerequisites
Basic course of molecular biology (eg. B4020, B4030, B3120 or B7940).
Course Enrolment Limitations
The course is only offered to the students of the study fields the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
Cílem kurzu je zvládnutí běžných aplikací potřebných pro zpracování diplomové práce z molekulární biologie, především seznámení posluchačů s informačními službami pro molekulární biologii (molekulárně biologické databáze a nástroje pro jejich využití).
Syllabus
  • Working with MS Windows. Word processors - MS Word. Spreadsheets - MS Excel. Statistical software (examples from general and quantitative genetics). Informational and fact-finding services in computer networks: applications in molecular biology and genetics (Current Contents, Medline). Database searching of nucleic acids and proteins (BLAST, Fasta). Sequence alignments (Blast, ClustalW). Gene finding (GeneMark, Glimmer). Functional genomics. Genome research (human genome, Drosophila, mouse, Saccharomyces, Arabidopsis). Specialized software for molecular biology. Sequence analysis (DNASIS). Analysis of electropherograms (GelCompar).
Literature
  • Viz webová stránka předmětu.
  • Bioinformatics : methods and protocols. Edited by Stephen Misener - Stephen A. Krawetz. Totowa, New Jersey: Humana Press, 2000, xi, 500 s. ISBN 0-86903-732-0. info
  • ATTWOOD, Teresa K. and David J. PARRY-SMITH. Introduction to bioinformatics. 1st pub. Essex: Longman, 1999, xx, 218. ISBN 0582327881. info
  • Bioinformatics : a practical guide to the analysis of genes and proteins. Edited by Andreas D. Baxevanis - Francis B.F. Ouellette. New York: Wiley-Interscience, 1998, xiv, 370 s. ISBN 0-471-19196-5. info
Assessment methods (in Czech)
Výuka probíhá každý týden v počítačové učebně COMPB. Pro ukončení je požadováno zpracování samostatné zápočtové práce dle zadaného tématu.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
The course can also be completed outside the examination period.
The course is taught annually.
The course is taught: every week.
Teacher's information
http://orion.sci.muni.cz/kgmb/bioinformat/
The course is also listed under the following terms Autumn 1999, Autumn 2000.

B5000 PC Applications in Molecular Biology and Genetics

Faculty of Science
Autumn 2000
Extent and Intensity
0/3/0. 4 credit(s). Type of Completion: graded credit.
Teacher(s)
RNDr. Ing. Karel Chroust, Ph.D. (seminar tutor)
prof. RNDr. Roman Pantůček, Ph.D. (seminar tutor)
doc. RNDr. Vladislava Růžičková, CSc. (seminar tutor)
Guaranteed by
prof. RNDr. Roman Pantůček, Ph.D.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Roman Pantůček, Ph.D.
Course Enrolment Limitations
The course is only offered to the students of the study fields the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
Description of personal computer - hardware. Operating systems. Basic commands of MS-DOS 6.2, Norton Commander. Working with MS Windows. Word processors - MS Word 97. Spreadsheets - MS Excel 97. Statistical software (examples from general and quantitative genetics). Internet - Telnet (basic Unix commands), World-Wide-Web, FTP, news conferences. Informational and fact-finding services in computer networks: applications in molecular biology and genetics (Current Contents, Medline). Database searching of nucleic acids and proteins (BLAST, Fasta). Sequence alignments. Gene finding. Functional genomics. Genome research (human genome, Drosophila, mouse, Saccharomyces, Arabidopsis). Specialized software for molecular biology. Sequence analysis (DNASIS). Analysis of electropherograms (GelCompar).
Language of instruction
Czech
Further Comments
The course can also be completed outside the examination period.
The course is taught annually.
The course is taught: every week.
The course is also listed under the following terms Autumn 1999, Autumn 2001.

B5000 PC Applications in Molecular Biology and Genetics

Faculty of Science
Autumn 1999
Extent and Intensity
0/3/0. 3 credit(s). Type of Completion: graded credit.
Teacher(s)
prof. RNDr. Roman Pantůček, Ph.D. (lecturer)
RNDr. Ing. Karel Chroust, Ph.D. (seminar tutor)
doc. RNDr. Vladislava Růžičková, CSc. (seminar tutor)
Guaranteed by
prof. RNDr. Roman Pantůček, Ph.D.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Roman Pantůček, Ph.D.
Course Enrolment Limitations
The course is only offered to the students of the study fields the course is directly associated with.
fields of study / plans the course is directly associated with
Syllabus
  • Description of personal computer - hardware. Operating systems. Basic commands of MS-DOS 6.2, Norton Commander. Working with MS Windows. Word processors - MS Word 97. Spreadsheets - MS Excel 97. Statistical software (examples from general and quantitative genetics). Internet - Telnet (basic Unix commands), World-Wide-Web, FTP, news conferences. Informational and fact-finding services in computer networks: applications in molecular biology and genetics (Current Contents, Medline). Database searching of nucleic acids and proteins (BLAST, Fasta). Sequence alignments. Gene finding. Functional genomics. Genome research (human genome, Drosophila, mouse, Saccharomyces, Arabidopsis). Specialized software for molecular biology. Sequence analysis (DNASIS). Analysis of electropherograms (GelCompar).
Language of instruction
Czech
Further Comments
The course is taught annually.
The course is taught: every week.
The course is also listed under the following terms Autumn 2000, Autumn 2001.
  • Enrolment Statistics (recent)