Course Information

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
In-person direct teaching

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)
doc. RNDr. Pavel Švec, Ph.D. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: Ing. Jiřina Kučerová, Ph.D.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Tue 8:00–10:50 E25/209

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 8 fields of study the course is directly associated with, display

Course objectives

Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Learning outcomes

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

required literature
• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info

recommended literature
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
General note: Přednášky budou realizovány online pomocí MS Teams v čase dle rozvrhu.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: Ing. Jiřina Kučerová, Ph.D.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Tue 8:00–10:50 E25/209

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 8 fields of study the course is directly associated with, display

Course objectives

Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Learning outcomes

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

required literature
• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info

recommended literature
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
General note: Přednášky budou realizovány online pomocí MS Teams v čase dle rozvrhu.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Fri 11:00–13:50 E25/209

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 8 fields of study the course is directly associated with, display

Course objectives

Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Learning outcomes

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

required literature
• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info

recommended literature
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
General note: Přednášky budou realizovány online pomocí MS Teams v čase dle rozvrhu.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Tue 13:00–15:50 E25/209

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 8 fields of study the course is directly associated with, display

Course objectives

Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Learning outcomes

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

required literature
• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info

recommended literature
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
General note: Přednášky budou realizovány online pomocí MS Teams v čase dle rozvrhu.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Tue 13:00–15:50 E25/209

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 8 fields of study the course is directly associated with, display

Course objectives

Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Learning outcomes

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

required literature
• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info

recommended literature
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
General note: Přednášky budou realizovány online pomocí MS Teams v čase dle rozvrhu.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Tue 14:00–16:50 E25/209

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 8 fields of study the course is directly associated with, display

Course objectives

Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Learning outcomes

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phenothypic properties as well as a phylogenetic position of analysed isolates.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

required literature
• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info

recommended literature
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Mon 17. 9. to Fri 14. 12. Tue 14:00–16:50 E25/209

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 6 fields of study the course is directly associated with, display

Course objectives

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Mon 18. 9. to Fri 15. 12. Mon 12:00–14:50 E25/209

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 6 fields of study the course is directly associated with, display

Course objectives

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Mon 19. 9. to Sun 18. 12. Tue 14:00–16:50 E25/209

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 6 fields of study the course is directly associated with, display

Course objectives

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Tue 14:00–16:50 E25/209

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 6 fields of study the course is directly associated with, display

Course objectives

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Tue 14:00–16:50 E25/209

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 6 fields of study the course is directly associated with, display

Course objectives

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Tue 10:00–12:50 Bpt,01013

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 6 fields of study the course is directly associated with, display

Course objectives

At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology – Biology Section – Faculty of Science

Timetable

Tue 10:00–12:50 Bpt,01013

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 6 fields of study the course is directly associated with, display

Course objectives

At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

4/0/0. 4 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Timetable

Tue 14:00–16:50 Bpt,01013

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

there are 6 fields of study the course is directly associated with, display

Course objectives

At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

4/0/0. 4 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Timetable

Wed 8:00–11:50 Bpt,01013

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

4/0/0. 4 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)
Mgr. et Mgr. Veronika Oškerová, Ph.D. (assistant)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Timetable

Tue 8:00–10:50 Bpt,01013

Prerequisites

Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, M-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

4/0/0. 4 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Timetable

Wed 11:00–14:50 Bpt,01013

Prerequisites

Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, M-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

The main objective of the course the Taxonomy of prokaryotes is explanation of systematics of prokaryotic microorganisms (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Assessment methods

Lectures, discussin during course, 2 written tests before laboratory course, final oral examination.

Language of instruction

Czech

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

4/0/0. 4 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Timetable

Wed 11:00–14:50 Bpt,01013

Prerequisites

Examination - microbiology, taxonomy of bacteria I., biochemistry.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, M-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Syllabus

• Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Literature

• Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Assessment methods (in Czech)

Přednáška, ústní zkouška.

Language of instruction

Czech

Further comments (probably available only in Czech)

Study Materials
The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

4/0/0. 4 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Timetable

Wed 9:00–12:50 Bpt,01013

Prerequisites

Examination - microbiology, taxonomy of bacteria I., biochemistry.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, M-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Syllabus

• Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Literature

• Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Assessment methods (in Czech)

Přednáška, ústní zkouška.

Language of instruction

Czech

Further comments (probably available only in Czech)

The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

4/0/0. 4 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Timetable

Thu 8:00–11:50 Bpt,01013

Prerequisites

Examination - microbiology, taxonomy of bacteria I., biochemistry.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, M-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Syllabus

• Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Literature

• Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Assessment methods (in Czech)

Přednáška, ústní zkouška.

Language of instruction

Czech

Further comments (probably available only in Czech)

The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of bacteria

Extent and Intensity

2/0/0. 2 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Timetable

Wed 11:00–12:50 Bpt,01013

Prerequisites

Examination - microbiology, taxonomy of bacteria I., biochemistry.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, M-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Syllabus

• Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Literature

• Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Assessment methods (in Czech)

Přednáška, ústní zkouška.

Language of instruction

Czech

Further comments (probably available only in Czech)

The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of bacteria

Extent and Intensity

2/0/0. 2 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Prerequisites

Examination - microbiology, taxonomy of bacteria I., biochemistry.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, M-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Syllabus

• Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Literature

• Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Assessment methods (in Czech)

Přednáška, ústní zkouška.

Language of instruction

Czech

Further comments (probably available only in Czech)

The course is taught annually.
The course is taught: every week.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of bacteria

Extent and Intensity

2/0/0. 4 credit(s). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Prerequisites

Examination - microbiology, taxonomy of bacteria I., biochemistry.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, M-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Syllabus

• Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Literature

• Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Assessment methods (in Czech)

Přednáška, ústní zkouška.

Language of instruction

Czech

Further comments (probably available only in Czech)

The course is taught annually.
The course is taught: every week.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

The information about the term Autumn 2011 - acreditation is not made public

Extent and Intensity

3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

The course is taught annually.
The course is taught: every week.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

4/0/0. 4 credit(s) (plus extra credits for completion). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Prerequisites

C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

At the end of this course, students should be able to identified prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledges the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.

Syllabus

• Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematic (one lecture). Menbers of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lectures). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nokardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotypic and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relaionships among species and would be able to explain to intra- or inter-species relationships.

Literature

• SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1st ed. Brno: Masarykova univerzita, 2007, 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
• Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
• Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
• Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
• Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
• Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
• Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Teaching methods

Lectures.

Assessment methods

Discusse in the begining of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.

Language of instruction

Czech

Follow-Up Courses

• Bi7170 Medical microbiology
• Bi8420 Microbial ecology

Further comments (probably available only in Czech)

The course is taught annually.
The course is taught: every week.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

Bi6700 Taxonomy of prokaryotes

Extent and Intensity

4/0/0. 4 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).

Teacher(s)

prof. RNDr. Ivo Sedláček, CSc. (lecturer)

Guaranteed by

prof. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology – Biology Section – Faculty of Science
Contact Person: prof. RNDr. Ivo Sedláček, CSc.

Prerequisites

Examination - microbiology, taxonomy of bacteria I., biochemistry.

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.

fields of study / plans the course is directly associated with

• General Biology (programme PřF, B-BI, specialization Microbiology)
• General Biology (programme PřF, M-BI, specialization Microbiology)
• General Biology (programme PřF, N-BI, specialization Microbiology)

Course objectives

Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Syllabus

• Bacterial taxonomy summarise a phylogenetic position of microorganisms from Prokaryotae domain and set a concept of systematic. Archaea are mentioned only in basic features of families and genera. The main attention is to domain Bacteria dividing in this lecture into three parts. The first is aimed to Gram negative cocci and rods including straight and curved bacteria or bacteria with gliding motility; on the base of aerobic conditions are mentioned aerobic, facultative anaerobic and anaerobic taxons. The second part includes Gram positive cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular; sporeforming and nonsporeforming. The last part of lecture indicate data about morphologically different prokaryote, such as mycoplasmas, mycobacteria, nokardioform or mycelium forming bacteria and intracellular parasites from ricketsia group.

Literature

• Bergey s manual of systematic bacteriology, Vol. 1., Springer, 2001
• Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994

Assessment methods (in Czech)

Přednáška, ústní zkouška.

Language of instruction

Czech

Further comments (probably available only in Czech)

The course is taught annually.
The course is taught: every week.
Information on course enrolment limitations: Limitujici je kapacita cvicebny

Listed among pre-requisites of other courses

• Bi6700c Taxonomy of prok.-lab.course
  NOW(Bi6700)  
• Bi6710 Taxonomy of pathogenic bacteria
  C3580 && (Bi4020 || NOW(Bi4020)) && (Bi4090 || NOW(Bi4090)) && !Bi6700  
• Bi7572 Microbiology Diploma Thesis I
  program(N-MIK) && Bi6700 && NOW(Bi6700)  

• Enrolment Statistics (recent)