Výpis publikací

HASSAN, Ahmed Adel Ibrahim Hassona, Matyáš PINKAS, Kosuke ITO, Toshio UCHIUMI a Gabriel DEMO. A novel archaeal ribosome anti-association factor promoting a distinctive 30S-30S dimerization. In RNA society meeting 2024. 2024.

FALTINEK, Lukáš, Filip MELICHER, Viktor KELEMEN, Erika MEZŐ, Anikó BORBÁS a Michaela WIMMEROVÁ. Bispecific Thio-linked Disaccharides as Inhibitors of Pseudomonas aeruginosa Lectins LecA (PA-IL) and LecB (PA-IIL): Dual-Targeting Strategy. Chemistry – A European Journal. Wiley, 2024. ISSN 0947-6539. Dostupné z: https://dx.doi.org/10.1002/chem.202403546.

HASSAN, Ahmed Adel Ibrahim Hassona, Matyáš PINKAS, Kosuke ITO, Toshio UCHIUMI a Gabriel DEMO. Distinct 30S subunit dimerization architecture facilitated by a novel ribosome dimerization factor in archaea. In XX Discussions in Structural Molecular Biology. 2024. ISSN 1805-4382.

HASSAN, Ahmed Adel Ibrahim Hassona, Matyáš PINKAS, CHIAKI YAESHIMA, SONOKO ISHINO, TOSHIO UCHIUMI, KOSUKE ITO a Gabriel DEMO. INVOLVEMENT OF A NOVEL RIBOSOME ASSOCIATED FACTOR INTRANSLATION REGULATION. In 3nd Meeting of the National Institute of Virology and Bacteriology (NIVB) in Kutná Hora, 2024. 2024.

HASSAN, Ahmed Adel Ibrahim Hassona, Yuko NAKANO, Gregor BLAHA, Hou YA-MING a Gabriel DEMO. The interplay between ribosomal anti-association factors during ribosome maturation. In EMBO/EMBL Symposium - The complex life of RNA. 2024.

SOARES GUERRA, Gabriel, Fedor Alexander ŽUPNÍK, Matyáš PINKAS a Gabriel DEMO. Unveiling the coupling of transcription and translation in bacteria. In XX Discussions in Structural Molecular Biology. 2024. ISSN 1805-4382.

ZAFAR, Hassan, Ludmila VESELÁ, Ahmed Adel Ibrahim Hassona HASSAN, Xueliang GE, Suparna SANYAL a Gabriel DEMO. DECIPHERING THE FUNCTIONALITY OF THE UNSTRUCTURED N-TERMINAL DOMAIN OF THE BACTERIAL INITIATION FACTOR 2. In NIVB meeting 2023. 2023. ISSN 2336-7210.

DAS, Amiyaranjan, Julia BARTULI, Clemens GRIMM, Utz FISCHER a Gabriel DEMO. INTERPLAY BETWEEN VIRAL TRANSCRIPTION AND HOST TRANSLATION. In NIVB meeting 2023. 2023. ISSN 2336-7210.

ZAFAR, Hassan a Gabriel DEMO. Liquid-liquid phase separation of a bacterial translation factor. In XXVIIth Biochemistry congress of Czech Society for Biochemistry and Molecular Biology. 2023. ISBN 978-80-8240-047-5.

HASSAN, Ahmed Adel I. H., Kosuke ITO, Toshio UCHIUMI a Gabriel DEMO. Ribosome hibernation in archaea. In XXVIIth Biochemistry congress of Czech Society for Biochemistry and Molecular Biology. 2023. ISBN 978-80-8240-047-5.

HASSAN, Ahmed Adel I. H., Yuko NAKANO, Gregor BLAHA, Ya-Ming HOU a Gabriel DEMO. RimM and RsfS ribosomal factors regulate the translation in bacteria. In XIX Discussions in Structural Molecular Biology. 2023.

HASSAN, Ahmed Adel Ibrahim Hassona, Christian IHLING, Claudio IACOBUCCI, Panagiotis L KASTRITIS, Andrea SINZ a Tobias KRUSE. The structural principles underlying molybdenum insertase complex assembly. Protein Science. MALDEN: WILEY-BLACKWELL, 2023, roč. 32, č. 9, s. 1-13. ISSN 0961-8368. Dostupné z: https://dx.doi.org/10.1002/pro.4753.

ZAFAR, Hassan, Hassan AHMED a Gabriel DEMO. Translation machinery captured in motion. Wiley Interdisciplinary Reviews: RNA. Hoboken, USA: WILEY-BLACKWELL, 2023, roč. 14, č. 5, s. 1-17. ISSN 1757-7004. Dostupné z: https://dx.doi.org/10.1002/wrna.1792.

ZAFAR, Hassan a Jr Milton, H. SAIER. Understanding the Relationship of the Human Bacteriome with COVID-19 Severity and Recovery. Advances in Fuel Cells. BASEL: Elsevier, 2023, roč. 12, č. 9, s. 1-31. ISSN 2073-4409. Dostupné z: https://dx.doi.org/10.3390/cells12091213.

DAS, Amiyaranjan, Julia BARTULI, Clemens GRIMM, Utz FISCHER a Gabriel DEMO. Viral transcription-translation coupling in mammalian cells. In XIX Discussions in Structural Molecular Biology. 2023.

HIRIYUR NAGARAJ, Pradeep, Lucie SLÁMOVÁ, Sylva BRABENCOVÁ a Gabriel DEMO. Active transcription-translation coupling at the early translation elongation stages. In 16th Multinational congress on Microscopy. 2022. ISBN 978-80-11-02253-2.

HIRIYUR NAGARAJ, Pradeep, Ahmed Adel I. H. HASSAN, Sylva BRABENCOVÁ, Lucie SLÁMOVÁ a Gabriel DEMO. BIOCHEMICAL ANALYSIS OF COMPLEX FORMATION BETWEEN RNA POLYMERASE AND RIBOSOME. In National Institute of Virology and Bacteriology Meeting, Kutná Hora. 2022. ISSN 2336-7210.

VESELÁ, Ludmila, Ahmed Adel I. H. HASSAN, Sylva BRABENCOVÁ, Lucie SLÁMOVÁ a Gabriel DEMO. CELLULAR COLOCALIZATION OF TRANSCRIPTION AND TRANSLATION. In National Institute of Virology and Bacteriology Meeting, Kutná Hora. 2022. ISSN 2336-7210.

ZAFAR, Hassan a Milton H Jr SAIER. Comparative Analyses of the Transport Proteins Encoded within the Genomes of nine Bifidobacterium Species. MICROBIAL PHYSIOLOGY. SWITZERLAND: KARGER, 2022, roč. 32, 1-2, s. 30-44. ISSN 2673-1665. Dostupné z: https://dx.doi.org/10.1159/000518954.

DEMO, Gabriel, Howard GAMPER, Anna LOVELAND, Isao MASUDA, Christine CARBONE, Egor SVIDRITSKYI, Ya MIng HOU a Andrei KOROSTELEV. CryoEM ensemble reveals the mechanism of 1 ribosomal frame shifting. In XVIII Discussions in Structural Molecular Biology. 2022.

GAUBITZ, Christl, Xingchen LIU, Joshua PAJAK, Nicholas P STONE, Janelle A HAYES, Gabriel DEMO a Brian A KELCH. Cryo-EM structures reveal high-resolution mechanism of a DNA polymerase sliding clamp loader. elife. CAMBRIDGE: ELIFE SCIENCES PUBLICATIONS LTD, 2022, roč. 11, FEB, s. nestrankovano, 29 s. ISSN 2050-084X. Dostupné z: https://dx.doi.org/10.7554/eLife.74175.

DEMO, Gabriel, Anna LOVELAND, Christine CARBONE, Egor SVIDRITSKIY a Andrei KOROSTELEV. Ensemble and time-resolved cryo-EM in transcription and translation. In XXI. setkani biochemiku a molekularnich biologu. 2022. ISBN 978-80-280-0136-0.

PETERKOVÁ, Kateřina, Ivo DURNÍK, Radek MAREK, Janez PLAVEC a Peter PODBEVŠEK. Pyrene-Lablled G-Quadruplexes Derived from the KIT Proto-Oncogene. In 35th Central European NMR Meeting, VALTICE, 2022. 2022.

LOVELAND, Anna B, Egor SVIDRITSKIY, Denis SUSOROV, Soojin LEE, Alexander PARK, Sarah ZVORNICANIN, Gabriel DEMO, Fen-Biao GAO a Andrei A KOROSTELEV. Ribosome inhibition by C9ORF72-ALS/FTD-associated poly-PR and poly-GR proteins revealed by cryo-EM. Nature Communications. London: Nature Publishing Group, 2022, roč. 13, č. 1, s. 2776-2788. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-022-30418-0.

PETERKOVÁ, Kateřina, Ivo DURNÍK, Radek MAREK, Janez PLAVEC a Peter PODBEVŠEK. Structural analysis of pyrene-labelled G-quadruplexes derived from the KIT proto-oncogene. In XIIth International conference, NMR: a tool for biology, Institut Pasteur. 2022.

JOURAVLEVA, Karina, Dmitrij GOLOVENKO, Gabriel DEMO, Robert C DUTCHER, Traci M Tanaka HALL, Phillip D ZAMORE a Andrei A KOROSTELEV. Structural basis of microRNA biogenesis by Dicer-1 and its partner protein Loqs-PB. Molecular Cell. CAMBRIDGE: CELL PRESS, 2022, roč. 82, č. 21, s. "4049"-"+", 22 s. ISSN 1097-2765. Dostupné z: https://dx.doi.org/10.1016/j.molcel.2022.09.002.

DEMO, Gabriel, Ahmed Adel I. H. HASSAN, Pradeep HIRIYUR NAGARAJ, Ludmila VESELÁ, Hassan ZAFAR, Amiyaranjan DAS, Lucie SLÁMOVÁ a Sylva BRABENCOVÁ. THE CLOSE INTERPLAY OF TWO GENE EXPRESSION MACHINERIES. In Czech Chemical Society Symposium Series - Annual meeting of the National Institute of Virology and Bacteriology (NIVB). 2022. ISSN 2336-7210.

HASSAN, Ahmed Adel I. H., Pradeep HIRIYUR NAGARAJ, Adrien CHAUVIER, Nils WALTER a Gabriel DEMO. Translation initiation stages of coupled transcription-translation. In 16th Multinational congress on Microscopy. 2022. ISBN 978-80-11-02253-2.

DEMO, Gabriel, Christine CARBONE, Anna LOVELAND, Egor SVIDRITSKIY, Howard GAMPER, Ya-Ming HOU a Andrei KOROSTELEV. Cryo-EM ensemble captures EF-G mediated ribosomal translocation in action. In XXVI. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology. 2021. ISBN 978-80-907779-1-0.

GHASHGHAEI, O., M. PEDROLA, F. SEGHETTI, V.V. MARTIN, R. ZAVARCE, Michal BABIAK, Jiří NOVÁČEK, F. HARTUNG, K.M. ROLFES, T. HAARMANN-STEMMANN a R. LAVILLA. Extended Multicomponent Reactions with Indole Aldehydes: Access to Unprecedented Polyheterocyclic Scaffolds, Ligands of the Aryl Hydrocarbon Receptor. Angewandte Chemie International Edition. WEINHEIM (GERMANY): Verlag Chemie, 2021, roč. 60, č. 5, s. 2603-2608. ISSN 1433-7851. Dostupné z: https://dx.doi.org/10.1002/anie.202011253.

JURČEK, Ondřej, N. NONAPPA, Elina KALENIUS, Pia Yasmine JURČEK, Juha M. LINNANTO, Rakesh PUTTREDDY, Hennie VALKENIER, Nikolay HOUBENOV, Michal BABIAK, Miroslav PETEREK, Anthony P. DAVIS, Radek MAREK a Kari RISSANEN. Hexagonal Microparticles from Hierarchical Self-Organization of Chiral Trigonal Pd3L6 Macrotetracycles. Cell Reports Physical Science. Cell Press, 2021, roč. 2, č. 1, s. 100303-100321. ISSN 2666-3864. Dostupné z: https://dx.doi.org/10.1016/j.xcrp.2020.100303.

VESELÁ, Ludmila, Hassan ZAFAR, Sylva BRABENCOVÁ, Lucie SLÁMOVÁ a Gabriel DEMO. In vivo fluorescent tracking system of coupled transcription-translation. In XXVI. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology. 2021. ISBN 978-80-907779-1-0.

PODHORSKÝ, Ján, Michal BABIAK, Jiří PINKAS, Corinna HEGEMANN, Sanjay MATHUR a Zdeněk MORAVEC. New mixed-ligand organoaluminum heteroarylalkenolates. Polyhedron. Elsevier, 2021, roč. 194, January, s. "114953", 12 s. ISSN 0277-5387. Dostupné z: https://dx.doi.org/10.1016/j.poly.2020.114953.

MORAVCOVÁ, Jana, Matyáš PINKAS, Radka HOLBOVÁ a Jiří NOVÁČEK. Preparation and Cryo-FIB micromachining of Saccharomyces cerevisiae for Cryo-Electron Tomography. Jove-Journal of Visualized Experiments. CAMBRIDGE: JOURNAL OF VISUALIZED EXPERIMENTS, 2021, NOV, č. 177, s. „e62351“, 16 s. ISSN 1940-087X. Dostupné z: https://dx.doi.org/10.3791/62351.

DEMO, Gabriel, H.B. GAMPER, A.B. LOVELAND, I. MASUDA, C.E. CARBONE, E. SVIDRITSKIY, Y.M. HOU a A.A. KOROSTELEV. Structural basis for+1 ribosomal frameshifting during EF-G-catalyzed translocation. Nature Communications. London: Nature Publishing Group, 2021, roč. 12, č. 1, s. 4644-4655. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-021-24911-1.

CARBONE, C.E., A.B. LOVELAND, H.B. GAMPER, Y.M. HOU, Gabriel DEMO a A.A. KOROSTELEV. Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nature Communications. London: Nature Publishing Group, 2021, roč. 12, č. 1, s. „7236“, 13 s. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-021-27415-0.

HIRIYUR NAGARAJ, Pradeep, Aviram RASOULY, Evgeny NUDLER, Andrei KOROSTELEV a Gabriel DEMO. Transcription-translation coupling at the stages of translation initiation and elongation. In XXVI. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology. 2021. ISBN 978-80-907779-1-0.

CARBONE, C.E., Gabriel DEMO, R. MADIREDDY, E. SVIDRITSKIY a A.A. KOROSTELEV. ArfB can displace mRNA to rescue stalled ribosomes. Nature Communications. London: Nature Publishing Group, 2020, roč. 11, č. 1, s. 5552-5560. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-020-19370-z.

LOVELAND, A.B., Gabriel DEMO a A.A. KOROSTELEV. Cryo-EM of elongating ribosome with EF-Tu center dot GTP elucidates tRNA proofreading. Nature. LONDON: NATURE PUBLISHING GROUP, 2020, roč. 584, č. 7822, s. "640"-"+", 24 s. ISSN 0028-0836. Dostupné z: https://dx.doi.org/10.1038/s41586-020-2447-x.

POLOVINKIN, V., K. KHAKUREL, Michal BABIAK, B. ANGELOV, B. SCHNEIDER, J. DOHNALEK, J. ANDREASSON a J. HAJDU. Demonstration of electron diffraction from membrane protein crystals grown in a lipidic mesophase after lamella preparation by focused ion beam milling at cryogenic temperatures. Journal of Applied Crystallography. Chester: INT UNION CRYSTALLOGRAPHY, 2020, roč. 53, DEC, s. 1416-1424. ISSN 0021-8898. Dostupné z: https://dx.doi.org/10.1107/S1600576720013096.

SÝKOROVÁ, Petra, Jitka NOVOTNÁ, Gabriel DEMO, Guillaume POMPIDOR, Eva DUBSKÁ, Jan KOMÁREK, Eva FUJDIAROVÁ, Josef HOUSER, Lucia HÁRONÍKOVÁ, Annabelle VARROT, Nadya SHILOVA, Anne IMBERTY, Nicolai BOVIN, Martina POKORNÁ a Michaela WIMMEROVÁ. Characterization of novel lectins from Burkholderia pseudomallei and Chromobacterium violaceum with seven-bladed beta-propeller fold. International journal of biological macromolecules. Amsterdam: Elsevier Science BV, 2020, roč. 152, JUN, s. 1113-1124. ISSN 0141-8130. Dostupné z: https://dx.doi.org/10.1016/j.ijbiomac.2019.10.200.