Publication Records

HASSAN, Ahmed Adel Ibrahim Hassona, Matyáš PINKAS, Kosuke ITO, Toshio UCHIUMI and Gabriel DEMO. A novel archaeal ribosome anti-association factor promoting a distinctive 30S-30S dimerization. In RNA society meeting 2024. 2024.

HASSAN, Ahmed Adel Ibrahim Hassona, Matyáš PINKAS, Kosuke ITO, Toshio UCHIUMI and Gabriel DEMO. Distinct 30S subunit dimerization architecture facilitated by a novel ribosome dimerization factor in archaea. In XX Discussions in Structural Molecular Biology. 2024. ISSN 1805-4382.

SOARES GUERRA, Gabriel, Fedor Alexander ŽUPNÍK, Matyáš PINKAS and Gabriel DEMO. Unveiling the coupling of transcription and translation in bacteria. In XX Discussions in Structural Molecular Biology. 2024. ISSN 1805-4382.

ZAFAR, Hassan, Ludmila VESELÁ, Ahmed Adel Ibrahim Hassona HASSAN, Xueliang GE, Suparna SANYAL and Gabriel DEMO. DECIPHERING THE FUNCTIONALITY OF THE UNSTRUCTURED N-TERMINAL DOMAIN OF THE BACTERIAL INITIATION FACTOR 2. In NIVB meeting 2023. 2023. ISSN 2336-7210.

DAS, Amiyaranjan, Julia BARTULI, Clemens GRIMM, Utz FISCHER and Gabriel DEMO. INTERPLAY BETWEEN VIRAL TRANSCRIPTION AND HOST TRANSLATION. In NIVB meeting 2023. 2023. ISSN 2336-7210.

ZAFAR, Hassan and Gabriel DEMO. Liquid-liquid phase separation of a bacterial translation factor. In XXVIIth Biochemistry congress of Czech Society for Biochemistry and Molecular Biology. 2023. ISBN 978-80-8240-047-5.

HASSAN, Ahmed Adel I. H., Kosuke ITO, Toshio UCHIUMI and Gabriel DEMO. Ribosome hibernation in archaea. In XXVIIth Biochemistry congress of Czech Society for Biochemistry and Molecular Biology. 2023. ISBN 978-80-8240-047-5.

HASSAN, Ahmed Adel I. H., Yuko NAKANO, Gregor BLAHA, Ya-Ming HOU and Gabriel DEMO. RimM and RsfS ribosomal factors regulate the translation in bacteria. In XIX Discussions in Structural Molecular Biology. 2023.

HASSAN, Ahmed Adel Ibrahim Hassona, Christian IHLING, Claudio IACOBUCCI, Panagiotis L KASTRITIS, Andrea SINZ and Tobias KRUSE. The structural principles underlying molybdenum insertase complex assembly. Protein Science. MALDEN: WILEY-BLACKWELL, 2023, vol. 32, No 9, p. 1-13. ISSN 0961-8368. Available from: https://dx.doi.org/10.1002/pro.4753.

ZAFAR, Hassan, Hassan AHMED and Gabriel DEMO. Translation machinery captured in motion. Wiley Interdisciplinary Reviews: RNA. Hoboken, USA: WILEY-BLACKWELL, 2023, vol. 14, No 5, p. 1-17. ISSN 1757-7004. Available from: https://dx.doi.org/10.1002/wrna.1792.

ZAFAR, Hassan and Jr Milton, H. SAIER. Understanding the Relationship of the Human Bacteriome with COVID-19 Severity and Recovery. Advances in Fuel Cells. BASEL: Elsevier, 2023, vol. 12, No 9, p. 1-31. ISSN 2073-4409. Available from: https://dx.doi.org/10.3390/cells12091213.

DAS, Amiyaranjan, Julia BARTULI, Clemens GRIMM, Utz FISCHER and Gabriel DEMO. Viral transcription-translation coupling in mammalian cells. In XIX Discussions in Structural Molecular Biology. 2023.

HIRIYUR NAGARAJ, Pradeep, Lucie SLÁMOVÁ, Sylva BRABENCOVÁ and Gabriel DEMO. Active transcription-translation coupling at the early translation elongation stages. In 16th Multinational congress on Microscopy. 2022. ISBN 978-80-11-02253-2.

HIRIYUR NAGARAJ, Pradeep, Ahmed Adel I. H. HASSAN, Sylva BRABENCOVÁ, Lucie SLÁMOVÁ and Gabriel DEMO. BIOCHEMICAL ANALYSIS OF COMPLEX FORMATION BETWEEN RNA POLYMERASE AND RIBOSOME. In National Institute of Virology and Bacteriology Meeting, Kutná Hora. 2022. ISSN 2336-7210.

VESELÁ, Ludmila, Ahmed Adel I. H. HASSAN, Sylva BRABENCOVÁ, Lucie SLÁMOVÁ and Gabriel DEMO. CELLULAR COLOCALIZATION OF TRANSCRIPTION AND TRANSLATION. In National Institute of Virology and Bacteriology Meeting, Kutná Hora. 2022. ISSN 2336-7210.

ZAFAR, Hassan and Milton H Jr SAIER. Comparative Analyses of the Transport Proteins Encoded within the Genomes of nine Bifidobacterium Species. MICROBIAL PHYSIOLOGY. SWITZERLAND: KARGER, 2022, vol. 32, 1-2, p. 30-44. ISSN 2673-1665. Available from: https://dx.doi.org/10.1159/000518954.

DEMO, Gabriel, Howard GAMPER, Anna LOVELAND, Isao MASUDA, Christine CARBONE, Egor SVIDRITSKYI, Ya MIng HOU and Andrei KOROSTELEV. CryoEM ensemble reveals the mechanism of 1 ribosomal frame shifting. In XVIII Discussions in Structural Molecular Biology. 2022.

GAUBITZ, Christl, Xingchen LIU, Joshua PAJAK, Nicholas P STONE, Janelle A HAYES, Gabriel DEMO and Brian A KELCH. Cryo-EM structures reveal high-resolution mechanism of a DNA polymerase sliding clamp loader. elife. CAMBRIDGE: ELIFE SCIENCES PUBLICATIONS LTD, 2022, vol. 11, FEB, p. nestrankovano, 29 pp. ISSN 2050-084X. Available from: https://dx.doi.org/10.7554/eLife.74175.

DEMO, Gabriel, Anna LOVELAND, Christine CARBONE, Egor SVIDRITSKIY and Andrei KOROSTELEV. Ensemble and time-resolved cryo-EM in transcription and translation. In XXI. setkani biochemiku a molekularnich biologu. 2022. ISBN 978-80-280-0136-0.

PETERKOVÁ, Kateřina, Ivo DURNÍK, Radek MAREK, Janez PLAVEC and Peter PODBEVŠEK. Pyrene-Lablled G-Quadruplexes Derived from the KIT Proto-Oncogene. In 35th Central European NMR Meeting, VALTICE, 2022. 2022.

LOVELAND, Anna B, Egor SVIDRITSKIY, Denis SUSOROV, Soojin LEE, Alexander PARK, Sarah ZVORNICANIN, Gabriel DEMO, Fen-Biao GAO and Andrei A KOROSTELEV. Ribosome inhibition by C9ORF72-ALS/FTD-associated poly-PR and poly-GR proteins revealed by cryo-EM. Nature Communications. London: Nature Publishing Group, 2022, vol. 13, No 1, p. 2776-2788. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-022-30418-0.

PETERKOVÁ, Kateřina, Ivo DURNÍK, Radek MAREK, Janez PLAVEC and Peter PODBEVŠEK. Structural analysis of pyrene-labelled G-quadruplexes derived from the KIT proto-oncogene. In XIIth International conference, NMR: a tool for biology, Institut Pasteur. 2022.

JOURAVLEVA, Karina, Dmitrij GOLOVENKO, Gabriel DEMO, Robert C DUTCHER, Traci M Tanaka HALL, Phillip D ZAMORE and Andrei A KOROSTELEV. Structural basis of microRNA biogenesis by Dicer-1 and its partner protein Loqs-PB. Molecular Cell. CAMBRIDGE: CELL PRESS, 2022, vol. 82, No 21, p. "4049"-"+", 22 pp. ISSN 1097-2765. Available from: https://dx.doi.org/10.1016/j.molcel.2022.09.002.

DEMO, Gabriel, Ahmed Adel I. H. HASSAN, Pradeep HIRIYUR NAGARAJ, Ludmila VESELÁ, Hassan ZAFAR, Amiyaranjan DAS, Lucie SLÁMOVÁ and Sylva BRABENCOVÁ. THE CLOSE INTERPLAY OF TWO GENE EXPRESSION MACHINERIES. In Czech Chemical Society Symposium Series - Annual meeting of the National Institute of Virology and Bacteriology (NIVB). 2022. ISSN 2336-7210.

HASSAN, Ahmed Adel I. H., Pradeep HIRIYUR NAGARAJ, Adrien CHAUVIER, Nils WALTER and Gabriel DEMO. Translation initiation stages of coupled transcription-translation. In 16th Multinational congress on Microscopy. 2022. ISBN 978-80-11-02253-2.

DEMO, Gabriel, Christine CARBONE, Anna LOVELAND, Egor SVIDRITSKIY, Howard GAMPER, Ya-Ming HOU and Andrei KOROSTELEV. Cryo-EM ensemble captures EF-G mediated ribosomal translocation in action. In XXVI. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology. 2021. ISBN 978-80-907779-1-0.

GHASHGHAEI, O., M. PEDROLA, F. SEGHETTI, V.V. MARTIN, R. ZAVARCE, Michal BABIAK, Jiří NOVÁČEK, F. HARTUNG, K.M. ROLFES, T. HAARMANN-STEMMANN and R. LAVILLA. Extended Multicomponent Reactions with Indole Aldehydes: Access to Unprecedented Polyheterocyclic Scaffolds, Ligands of the Aryl Hydrocarbon Receptor. Angewandte Chemie International Edition. WEINHEIM (GERMANY): Verlag Chemie, 2021, vol. 60, No 5, p. 2603-2608. ISSN 1433-7851. Available from: https://dx.doi.org/10.1002/anie.202011253.

JURČEK, Ondřej, N. NONAPPA, Elina KALENIUS, Pia Yasmine JURČEK, Juha M. LINNANTO, Rakesh PUTTREDDY, Hennie VALKENIER, Nikolay HOUBENOV, Michal BABIAK, Miroslav PETEREK, Anthony P. DAVIS, Radek MAREK and Kari RISSANEN. Hexagonal Microparticles from Hierarchical Self-Organization of Chiral Trigonal Pd3L6 Macrotetracycles. Cell Reports Physical Science. Cell Press, 2021, vol. 2, No 1, p. 100303-100321. ISSN 2666-3864. Available from: https://dx.doi.org/10.1016/j.xcrp.2020.100303.

VESELÁ, Ludmila, Hassan ZAFAR, Sylva BRABENCOVÁ, Lucie SLÁMOVÁ and Gabriel DEMO. In vivo fluorescent tracking system of coupled transcription-translation. In XXVI. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology. 2021. ISBN 978-80-907779-1-0.

PODHORSKÝ, Ján, Michal BABIAK, Jiří PINKAS, Corinna HEGEMANN, Sanjay MATHUR and Zdeněk MORAVEC. New mixed-ligand organoaluminum heteroarylalkenolates. Polyhedron. Elsevier, 2021, vol. 194, January, p. "114953", 12 pp. ISSN 0277-5387. Available from: https://dx.doi.org/10.1016/j.poly.2020.114953.

MORAVCOVÁ, Jana, Matyáš PINKAS, Radka HOLBOVÁ and Jiří NOVÁČEK. Preparation and Cryo-FIB micromachining of Saccharomyces cerevisiae for Cryo-Electron Tomography. Jove-Journal of Visualized Experiments. CAMBRIDGE: JOURNAL OF VISUALIZED EXPERIMENTS, 2021, NOV, No 177, p. „e62351“, 16 pp. ISSN 1940-087X. Available from: https://dx.doi.org/10.3791/62351.

DEMO, Gabriel, H.B. GAMPER, A.B. LOVELAND, I. MASUDA, C.E. CARBONE, E. SVIDRITSKIY, Y.M. HOU and A.A. KOROSTELEV. Structural basis for+1 ribosomal frameshifting during EF-G-catalyzed translocation. Nature Communications. London: Nature Publishing Group, 2021, vol. 12, No 1, p. 4644-4655. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-021-24911-1.

CARBONE, C.E., A.B. LOVELAND, H.B. GAMPER, Y.M. HOU, Gabriel DEMO and A.A. KOROSTELEV. Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nature Communications. London: Nature Publishing Group, 2021, vol. 12, No 1, p. „7236“, 13 pp. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-021-27415-0.

HIRIYUR NAGARAJ, Pradeep, Aviram RASOULY, Evgeny NUDLER, Andrei KOROSTELEV and Gabriel DEMO. Transcription-translation coupling at the stages of translation initiation and elongation. In XXVI. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology. 2021. ISBN 978-80-907779-1-0.

CARBONE, C.E., Gabriel DEMO, R. MADIREDDY, E. SVIDRITSKIY and A.A. KOROSTELEV. ArfB can displace mRNA to rescue stalled ribosomes. Nature Communications. London: Nature Publishing Group, 2020, vol. 11, No 1, p. 5552-5560. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-020-19370-z.

LOVELAND, A.B., Gabriel DEMO and A.A. KOROSTELEV. Cryo-EM of elongating ribosome with EF-Tu center dot GTP elucidates tRNA proofreading. Nature. LONDON: NATURE PUBLISHING GROUP, 2020, vol. 584, No 7822, p. "640"-"+", 24 pp. ISSN 0028-0836. Available from: https://dx.doi.org/10.1038/s41586-020-2447-x.

POLOVINKIN, V., K. KHAKUREL, Michal BABIAK, B. ANGELOV, B. SCHNEIDER, J. DOHNALEK, J. ANDREASSON and J. HAJDU. Demonstration of electron diffraction from membrane protein crystals grown in a lipidic mesophase after lamella preparation by focused ion beam milling at cryogenic temperatures. Journal of Applied Crystallography. Chester: INT UNION CRYSTALLOGRAPHY, 2020, vol. 53, DEC, p. 1416-1424. ISSN 0021-8898. Available from: https://dx.doi.org/10.1107/S1600576720013096.

SÝKOROVÁ, Petra, Jitka NOVOTNÁ, Gabriel DEMO, Guillaume POMPIDOR, Eva DUBSKÁ, Jan KOMÁREK, Eva FUJDIAROVÁ, Josef HOUSER, Lucia HÁRONÍKOVÁ, Annabelle VARROT, Nadya SHILOVA, Anne IMBERTY, Nicolai BOVIN, Martina POKORNÁ and Michaela WIMMEROVÁ. Characterization of novel lectins from Burkholderia pseudomallei and Chromobacterium violaceum with seven-bladed beta-propeller fold. International journal of biological macromolecules. Amsterdam: Elsevier Science BV, 2020, vol. 152, JUN, p. 1113-1124. ISSN 0141-8130. Available from: https://dx.doi.org/10.1016/j.ijbiomac.2019.10.200.