Výpis publikací

HANOUSEK, Tomáš, Terézia SLANINÁKOVÁ, Tomáš REBOK a Růžena JANOUTOVÁ. A dataset of hyperspectral Look-Up Tables for 3.5 million traits and structural combinations of Central European temperate broadleaf forests. 2024. Dostupné z: https://dx.doi.org/10.48700/datst.bcnpf-47q73.

FLORIS-JAN, Willemsen, Richard SCHOONHOVEN, Jiří FILIPOVIČ, Jacob O. TØRRING, Rob van NIEUWPOORT a Ben van WERKHOVEN. A methodology for comparing optimization algorithms for auto-tuning. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2024, roč. 109, October 2024, s. 489-504. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2024.05.021.

HRADISKÁ, Helena, Martin KUREČKA, Jan BERÁNEK, Guglielmo TEDESCHI, Vladimír VIŠŇOVSKÝ, Aleš KŘENEK a Vojtěch SPIWOK. Acceleration of Molecular Simulations by Parametric Time-Lagged tSNE Metadynamics. The Journal of Physical Chemistry B. 2024. ISSN 1520-6106. Dostupné z: https://dx.doi.org/10.1021/acs.jpcb.3c05669.

SLANINÁKOVÁ, Terézia, David PROCHÁZKA, Jakub ČILLÍK, Lucie NOVOTNÁ a Adrián ROŠINEC. AlphaFind. 2024. Dostupné z: https://dx.doi.org/10.5281/zenodo.11085862.

SLANINÁKOVÁ, Terézia, David PROCHÁZKA, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Jakub ČILLÍK, Miriama JÁNOŠOVÁ, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL a Matej ANTOL. AlphaFind — discover structure similarity across the proteome in AlphaFold DB. In Elixir All-Hands 2024. 2024. Dostupné z: https://dx.doi.org/10.7490/f1000research.1119872.1.

GREŠOVÁ, Katarína, Pavlína ŠPRINGEROVÁ, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Jaroslav OĽHA, Adrián ROŠINEC, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL a Matej ANTOL. AlphaFind — discover structure similarity across the proteome in AlphaFold DB. In ECCB2024. 2024.

PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL a Matej ANTOL. AlphaFind: Discover structure similarity across the entire known proteome. bioRxiv, 2024.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Katarína GREŠOVÁ, Jaroslav OĽHA, Vlastislav DOHNAL, Adrián ROŠINEC a Matej ANTOL. AlphaFind: Discover structure similarity across the entire known proteome – data and model. 2024. Dostupné z: https://dx.doi.org/10.48700/datst.d35zf-1ja47.

PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL a Matej ANTOL. AlphaFind: discover structure similarity across the proteome in AlphaFold DB. Nucleic acids research. Oxford: Oxford University Press, 2024, roč. 52, July 5, s. W182-W186, 5 s. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkae397.

BERANEK, Jan, Aleš KŘENEK a Vojtěch SPIWOK. Analysis of metadynamics simulations by metadynminer.py. Bioinformatics. OXFORD: Oxford University Press, 2024, roč. 40, č. 10, 4 s. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btae614.

ROŠINEC, Adrián, Tomáš PAVLÍK, Terézia SLANINÁKOVÁ, Aleš KŘENEK, Pavlína ŠPRINGEROVÁ, Matej ANTOL a Radka SVOBODOVÁ. Beyond Metadata: Leveraging Similarity Search in Molecular Dynamics Data. In 2nd BioExcel Conference on Advances in Biomolecular Simulations. 2024. Dostupné z: https://dx.doi.org/10.5281/zenodo.14500696.

CAPANDOVÁ, Michaela, Veronika SEDLÁKOVÁ, Zbyněk VORÁČ, Hana KOTASOVÁ, Jana DUMKOVÁ, Lukáš MORÁŇ, Josef JAROŠ, Matej ANTOL, Dáša BOHAČIAKOVÁ a Aleš HAMPL. Cells, biomaterials, infrastructure; and the value of the data. In 2. Offsite Meeting of the Department of Histology and Embryology (ÚHE): Advancing Science and Collaboration. 2024. ISBN 978-80-280-0587-0.

HÁJEK, Adam a Aleš HORÁK. CzeGPT-2 – Training New Model for Czech Generative Text Processing Evaluated with the Summarization Task. IEEE ACCESS. UNITED STATES: IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC, 2024, roč. 2024, č. 12, s. 34570-34581. ISSN 2169-3536. Dostupné z: https://dx.doi.org/10.1109/ACCESS.2024.3371689.

SVOBODA, Tomáš, Jakub ČILLÍK, Michal MIKL, Tomáš SLAVÍČEK a Radka SVOBODOVÁ. Data Management and FAIRification in MAFIL. In Czech‐BioImaging Annual Scientific Conference 2024: Imaging Principles of Life. 2024.

SVOBODA, Tomáš, Adrián ROŠINEC, Tomáš RAČEK a Radka SVOBODOVÁ. Data Management of Biological Imaging Data. In ELIXIR CZ Annual Conference 2024: Data management. 2024.

SVOBODA, Tomáš a Adrián ROŠINEC. Data workflows at CEITEC MU. In Setkání OS metodiků MU. 2024.

HARUTYUNYAN, Suren, Eduardo CÉSAR, Anna SIKORA, Jiří FILIPOVIČ, Akash DUTTA, Ali JANNESARI a Jordi ALCARAZ. Efficient Code Region Characterization Through Automatic Performance Counters Reduction Using Machine Learning Techniques. Online. In European Conference on Parallel Processing. Madrid, Spain: Springer Nature Switzerland, 2024, s. 18-32, 14 s. ISBN 978-3-031-69576-6. Dostupné z: https://dx.doi.org/10.1007/978-3-031-69577-3_2.

ANTOL, Matej, Jiří MAREK, Michaela CAPANDOVÁ, Jaroslav JURÁČEK a Luděk MATYSKA. EOSC CZ: Towards the development of Czech national ecosystem for FAIR research data. arXiv, 2024, 2 s.

VÍTEČEK, Jan, Andrea VÍTEČKOVÁ WÜNSCHOVÁ, Sandra THALEROVÁ, Sumeet GULATI, Lukáš KUBALA, Michaela CAPANDOVÁ, Aleš HAMPL a Robert MIKULÍK. Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment. PLOS ONE. SAN FRANCISCO: PUBLIC LIBRARY SCIENCE, 2024, roč. 6, č. 19, s. 1-13. ISSN 1932-6203. Dostupné z: https://dx.doi.org/10.1371/journal.pone.0302269.

VÍTEČEK, Jan, Andrea VÍTEČKOVÁ WÜNSCHOVÁ, Sandra THALEROVÁ, Sumeet GULATI, Lukáš KUBALA, Michaela CAPANDOVÁ, Aleš HAMPL a Robert MIKULÍK. Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment. Plos one. San Francisco: Public Library of Science, 2024, roč. 19, č. 6, s. 1-13. ISSN 1932-6203. Dostupné z: https://dx.doi.org/10.1371/journal.pone.0302269.

SLANINÁKOVÁ, Terézia, Katarína GREŠOVÁ, David PROCHÁZKA, Viktória SPIŠAKOVÁ, Adrián ROŠINEC, Jakub ČILLÍK, Pavlína ŠPRINGEROVÁ, Aleš KŘENEK, Vlastislav DOHNAL, Radka SVOBODOVÁ a Matej ANTOL. Fast, structure-based searching in a large-scale protein data repository. In ELIXIR CZ Annual Conference. 2024. Dostupné z: https://dx.doi.org/10.13140/RG.2.2.31355.53281.

DAUBNER, Lukáš, Barbora BÜHNOVÁ a Tomáš PITNER. Forensic experts' view of forensic-ready software systems: A qualitative study. Journal of Software: Evolution and Process. HOBOKEN: WILEY, 2024, roč. 36, č. 5, s. 1-23. ISSN 2047-7473. Dostupné z: https://dx.doi.org/10.1002/smr.2598.

DAUBNER, Lukáš, Sofija MAKSOVIĆ, Raimundas MATULEVIČIUS, Barbora BÜHNOVÁ a Tomáš SEDLÁČEK. Forensic-Ready Analysis Suite: A Tool Support for Forensic-Ready Software Systems Design. Online. In International Conference on Research Challenges in Information Science (RCIS 2024). Neuveden: Springer, 2024, s. 47–55. ISBN 978-3-031-59467-0. Dostupné z: https://dx.doi.org/10.1007/978-3-031-59468-7_6.

DAUBNER, Lukáš, Sofija MAKSOVIĆ a Tomáš SEDLÁČEK. FREAS: Forensic-Ready Analysis Suite. 2024.

JEANSON, Francis, Spencer J GIBSON, Pinar ALPER, Alexander BERNIER, J Patrick WOOLLEY, Daniel MIETCHEN, Andrzej STRUG, Regina BECKER, Pim KAMERLING, Maria del Carmen Sanchez GONZALEZ, Nancy MAH, Ann NOVAKOWSKI, Mark D WILKINSON, Oussama Mohammed BENHAMED, Annalisa LANDI, Georg Philip KROG, Heimo MÜLLER, Umar RIAZ, Colin VEAL, Petr HOLUB, Esther VAN ENCKEVORT a Anthony J BROOKES. Getting your DUCs in a row - standardising the representation of Digital Use Conditions. SCIENTIFIC DATA. London: NATURE PORTFOLIO, 2024, roč. 11, č. 1, s. 1-10. ISSN 2052-4463. Dostupné z: https://dx.doi.org/10.1038/s41597-024-03280-6.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL a Matej ANTOL. GraSR: Protein structural embeddings of AlphaFold DB. 2024. Dostupné z: https://dx.doi.org/10.48700/datst.br8aq-db495.

SVOBODA, Tomáš, Adrián ROŠINEC a Ondřej FILIP. Hands-on experience with big data transfer via iRODS and Onedata. In e-INFRA CZ CONFERENCE 2024. 2024.

HANOUSEK, Tomáš, Terézia SLANINÁKOVÁ, Tomáš REBOK a Růžena JANOUTOVÁ. High spatial and spectral resolution dataset of hyperspectral look-up tables for 3.5 million traits and structural combinations of Central European temperate broadleaf forests. DATA IN BRIEF. NETHERLANDS: ELSEVIER, 2024, roč. 57, December 2024, 13 s. ISSN 2352-3409. Dostupné z: https://dx.doi.org/10.1016/j.dib.2024.111105.

ŠPAČKOVÁ, Anna, Ondřej VÁVRA, Tomáš RAČEK, Václav BAZGIER, David SEHNAL, Jiří DAMBORSKÝ, Radka SVOBODOVÁ, David BEDNÁŘ a Karel BERKA. ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era. Nucleic Acids Research. Oxford University Press, 2024, roč. 52, D1, s. "D413"-"D418", 6 s. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkad1012.

KUESS, Lukas, Ernst PAUNZEN, Nikola FALTOVÁ, Daniel JADLOVSKÝ, Matúš LABAJ, Marko MESARČ, Prapti MONDAL, Michal PRIŠEGEN, Tahereh RAMEZANI, Johana SUPÍKOVÁ, Kateřina SVAČINKOVÁ, Michaela VÍTKOVÁ, Caiyun XIA, Klaus BERNHARD a Stefan HÜMMERICH. Chemically peculiar stars on the pre-main sequence. Astronomy & Astrophysics. EDP Sciences, 2024, roč. 687, July 2024, s. 1-24. ISSN 0004-6361. Dostupné z: https://dx.doi.org/10.1051/0004-6361/202348926.

KACOVÁ, Radoslava, Zdenka DUDOVÁ, Tomáš HOUFEK, Radovan TOMÁŠIK a Roman HRSTKA. Integration, Cataloguing and FAIRification of Biobank and Clinical Data. In Europe Biobank Week Congress 2024. 2024.

KÉPEŠ, Erik, Jakub VRÁBEL, Tomáš BRÁZDIL, Petr HOLUB, Pavel POŘÍZKA a Jozef KAISER. Interpreting convolutional neural network classifiers applied to laser-induced breakdown optical emission spectra. Talanta. AMSTERDAM: Elsevier, 2024, roč. 266, č. 124946, s. 1-11. ISSN 0039-9140. Dostupné z: https://dx.doi.org/10.1016/j.talanta.2023.124946.

ROŠINEC, Adrián. Introduction to the new generation EGI container execution platform. In EGI Webinar programme 2024. 2024. Dostupné z: https://dx.doi.org/10.5281/zenodo.10566759.

HRŮZA, Filip, Martin GREGOR, Kristýna TULISOVÁ, Kateřina NOVÁKOVÁ, Lucia HRŮZOVÁ, Martin DVOŘÁK a Jan ZVARA. Koncepce rozvoje svazku obcí Tišnovsko. 2024.

SLANINÁKOVÁ, Terézia a David PROCHÁZKA. Learned Metric Index. 2024. Dostupné z: https://dx.doi.org/10.5281/zenodo.13860051.

HOLUB, Petr. Leveraging BBMRI-ERIC for XAI Research in Digital Pathology. In 20th European Congress on Digital Pathology 2024 (ECDP2024). 2024.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL a Matej ANTOL. LMI-10: Protein structural embeddings of AlphaFold DB. 2024. Dostupné z: https://dx.doi.org/10.48700/datst.t45hr-bcw17.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL a Matej ANTOL. LMI-30: Protein structural embeddings of AlphaFold DB. 2024. Dostupné z: https://dx.doi.org/10.48700/datst.kgb8j-r5f84.

SVOBODA, Tomáš. MAFILDB - technická realizace. In FAIR data pro uživatele CF MAFIL. 2024.

OHMANN, Christian, Maria PANAGIOTOPOULOU, Steve CANHAM, Petr HOLUB, Kurt MAJCEN, Gary SAUNDERS, Maddalena FRATELLI, Jing TANG, Philip GRIBBON, Reagon KARKI, Mari KLEEMOLA, Katja MOILANEN, Daan BROEDER, Walter DAELEMANS a Pieter FIVEZ. Proposal for a framework of contextual metadata in selected research infrastructures of the life sciences and the social sciences & humanities. International Journal of Metadata, Semantics and Ontologies. Inderscience Publishers, 2024, roč. 16, č. 4, s. 261-277. ISSN 1744-2621.

HECHT, Helge, Wudmir Yudy ROJAS VERASTEGUI, Zargham AHMAD, Aleš KŘENEK, Jana KLÁNOVÁ a Elliott James PRICE. Quantum Chemistry-Based Prediction of Electron Ionization Mass Spectra for Environmental Chemicals. Analytical chemistry. WASHINGTON: American Chemical Society, 2024, roč. 96, č. 33, s. 13652-13662. ISSN 0003-2700. Dostupné z: https://dx.doi.org/10.1021/acs.analchem.4c02589.

BUČEKOVÁ, Gabriela, Viktoriia DOSHCHENKO, Aliaksei CHARESHNEU, Jana PORUBSKÁ, Michal PAJTINKA, Michal OLEKSIK, Tomáš SVOBODA, Vladimír HORSKÝ a Radka SVOBODOVÁ. Rare ring conformations in PDB: Facts or wishful thinking? bioRxiv. 2024. Dostupné z: https://dx.doi.org/10.1101/2024.06.20.598822.

GREŠOVÁ, Katarína, Tomáš RAČEK, Vlastimil MARTINEK, David ČECHÁK, Radka SVOBODOVÁ a Panagiotis ALEXIOU. RBP-Tar – a searchable database for experimental RBP binding sites. F1000Research. 2024. Dostupné z: https://dx.doi.org/10.12688/f1000research.131014.2.

ROŠINEC, Adrián a Tomáš SVOBODA. Research Data Management at CEITEC MU. In Open Science Workshop 2024. 2024.

PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jozef ČERŇANSKÝ, Jaroslav OĽHA, Matej ANTOL a Vlastislav DOHNAL. Scaling Learned Metric Index to 100M Datasets. In Edgar Chávez, Benjamin Kimia, Jakub Lokoč, Marco Patella, Jan Sedmidubsky. 17th International Conference on Similarity Search and Applications (SISAP 2024). Cham: Springer, 2024, s. 266-273. ISBN 978-3-031-75822-5. Dostupné z: https://dx.doi.org/10.1007/978-3-031-75823-2_22.

SVOBODA, Tomáš, Adrián ROŠINEC, Tomáš RAČEK, Josef HANDL, Aleš KŘENEK a Radka SVOBODOVÁ. Scientific Dataset Management System for the Research Institute Based on Onedata. In EGI Conference 2024. 2024.

HANOUSEK, Tomáš, Terézia SLANINÁKOVÁ, Růžena JANOUTOVÁ, Marian ŠVIK, Tomáš REBOK a Lucie HOMOLOVÁ. Simulated trait and spectroscopy data to support retrieval of forest biophysical parameters from spaceborne imaging spectroscopy. In 3rd WORKSHOP ON INTERNATIONAL COOPERATION IN SPACEBORNE IMAGING SPECTROSCOPY. 2024.

PEŠÁN, Jan, Vojtěch JUŘÍK, Alexandra RUŽIČKOVÁ, Vojtěch SVOBODA, Oto JANOUŠEK, Andrea NĚMCOVÁ, Hana BOJANOVSKÁ, Jasmína ALDABAGHOVÁ, Filip KYSLÍK, Kateřina VODIČKOVÁ, Adéla SODOMOVÁ, Patrik BARTYS, Peter CHUDÝ a Jan ČERNOCKÝ. Speech production under stress for machine learning: multimodal dataset of 79 cases and 8 signals. SCIENTIFIC DATA. London: SPRINGER NATURE, 2024, roč. 11, č. 1221, s. 1-9. ISSN 2052-4463. Dostupné z: https://dx.doi.org/10.1038/s41597-024-03991-w.

ŠEJNA, Erik. Test Anxiety Among Czech Pupils in Lower-Secondary Education. Online. Studia paedagogica. Brno, 2024, roč. 29, č. 2, s. 108-127. Dostupné z: https://dx.doi.org/10.5817/SP2024-2-5.

ŠEJNA, Erik. Testová úzkost a sociálně-afektivní indikátory well-beingu v nižším sekundárním vzdělávání. Online. In Andrea Rozkovcová, Jakub Pivarč. Sborník příspěvků z XXXII. výroční konference České asociace pedagogického výzkumu: SPOLUPRÁCE OBORŮ PRO PODPORU KVALITY VZDĚLÁVÁNÍ. Česká asociace pedagogického výzkumu, 2024, s. 43-89. ISBN 978-80-7392-421-8.

DRAŠAR, Martin, Ádám RUMAN, Pavel ČELEDA a Yang SCHANCHIEH. The Road Towards Autonomous Cybersecurity Agents: Remedies for Simulation Environments. Online. In Sokratis Katsikas et al. ESORICS 2023: Computer Security. ESORICS 2023 International Workshops. Neuveden: Springer Nature Switzerland AG, 2024, s. 738-749. ISBN 978-3-031-54128-5. Dostupné z: https://dx.doi.org/10.1007/978-3-031-54129-2_43.

WITTNER, Rudolf, Petr HOLUB, Cecilia MASCIA, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Clare ALLOCCA, Fay BETSOU, Tony BURDETT, Ibon CANCIO, Adriane CHAPMAN, Martin CHAPMAN, Mélanie COURTOT, Vasa CURCIN, Johann EDER, Mark ELLIOT, Katrina EXTER, Carole GOBLE, Martin GOLEBIEWSKI, Bron KISLER, Andreas KREMER, Simone LEO, Sheng LIN-GIBSON, Anna MARSANO, Marco MATTAVELLI, Josh MOORE, Hiroki NAKAE, Isabelle PERSEIL, Ayat SALMAN, James SLUKA, Stian SOILAND-REYES, Caterina STRAMBIO-DE-CASTILLIA, Michael SUSSMAN, Jason R SWEDLOW, Kurt ZATLOUKAL a Jörg GEIGER. Toward a common standard for data and specimen provenance in life sciences. LEARNING HEALTH SYSTEMS. UNITED STATES: WILEY, 2024, roč. 8, č. 1, s. 1-9. ISSN 2379-6146. Dostupné z: https://dx.doi.org/10.1002/lrh2.10365.

DEMEK, Miroslav a Jiří FILIPOVIČ. Towards Dynamic Autotuning of SpMV in CUSP Library. Online. In IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW). San Francisco, USA: IEEE, 2024, s. 14-22. ISBN 979-8-3503-6461-3. Dostupné z: https://dx.doi.org/10.1109/IPDPSW63119.2024.00012.

ZAVADIL, Jan, Jaroslav JURÁČEK, Barbora ČECHOVÁ, Tomáš ROHAN, Jakub HUSTÝ, Ondřej SLABÝ, Martina LITSCHMANNOVÁ, Michal UHER, S. Nahum GOLDBERG a Tomáš ANDRAŠINA. Tumor Suppressor miR-34a: Potential Biomarker of TACE Response in HCC. Online. CVIR Endovascular. Springer Nature, 2024, roč. 2024. Dostupné z: https://dx.doi.org/10.1007/s00270-024-03908-5.

CAPANDOVÁ, Michaela, Veronika SEDLÁKOVÁ, Zbyněk VORÁČ, Hana KOTASOVÁ, Jana DUMKOVÁ, Lukáš MORÁŇ, Josef JAROŠ, Matej ANTOL, Dáša BOHAČIAKOVÁ a Aleš HAMPL. Using Polycaprolactone Nanofibers for the Proof-of-Concept Construction of the Alveolar-Capillary Interface. JOURNAL OF BIOMEDICAL MATERIALS RESEARCH PART A. Hoboken: WILEY, 2024, s. 1-16. ISSN 1549-3296. Dostupné z: https://dx.doi.org/10.1002/jbm.a.37824.

HUTEČKOVÁ, Barbora, Jan KŘIVÁNEK, Zuzana SUMBALOVÁ KOLEDOVÁ, Zuzana HOLUBCOVÁ, Matea BREZAK, Ivana AĆIMOVIĆ, Türkan PORTAKAL, Jana DUMKOVÁ, Lukáš MORÁŇ, Aleš HAMPL, Yelyzaveta MAKIEIEVA, Tereza VÁŇOVÁ, Dáša BOHAČIAKOVÁ, Václav CHOCHOLA, Josef JAROŠ, Katarína ČIMBOROVÁ, Irena KOUTNÁ, Michaela BOSÁKOVÁ, Tomáš BÁRTA, Vítězslav HAVLÍČEK, Soňa KLOUDOVÁ, Vincent Alexander JONGEN, Jarmila HERŮDKOVÁ, Marcos GONZÁLEZ LÓPEZ, Leoš BENÁK, Maryam AZAM, Haneen Riadh Ali TUAIMA, Margarita GORBULINA, Josef LAVICKÝ, Marina ŠTRUNCOVÁ, Erika MIKULENKOVÁ, Riza Can CAKMAKCI, Petr VAŇHARA, Vendula PELKOVÁ, Victorio Martin POZO DEVOTO, Hana KOTASOVÁ, Michaela KAVKOVÁ, Petr TAUŠ, David VYSLOUŽIL, Canan ÇELIKER, Kateřina AMRUZ ČERNÁ, Naděžda VAŠKOVICOVÁ, Tereza SOURALOVÁ, Volodymyr POROKH, Drahomíra KYJOVSKÁ, Daniela KROČIANOVÁ, Michaela CAPANDOVÁ, Veronika SEDLÁKOVÁ, Veronika FEDOROVÁ, Jan RAŠKA, Miriam SATKOVÁ, Petr FOJTÍK, Klára PLEŠINGROVÁ, Soňa CESNÁRIKOVÁ, Jiří SEDMÍK, Hana HŘÍBKOVÁ, Marko MEĆAVA, Adam HARMANEC, Veronika POSPÍŠILOVÁ, Tami BOČKOVÁ, Veronika BOSÁKOVÁ, Adam BOGDANOVIČ, Zbyněk ZDRÁHAL, Vladislav RAKULTSEV, Marcela BUCHTOVÁ, Simona BÁRTOVÁ a Petr GINTAR. 2. Offsite Meeting of the Department of Histology and Embryology (ÚHE): Advancing Science and Collaboration. Edition: 1., electronic. Brno: Masarykova Univerzita, 2024, 18 s. ISBN 978-80-280-0587-0.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL a Matej ANTOL. 3D-af-Surfer: Protein structural embeddings of AlphaFold DB. 2024. Dostupné z: https://dx.doi.org/10.48700/datst.tbws0-hj147.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL a Matej ANTOL. 3DZD: Protein structural embeddings of AlphaFold DB v4. 2024. Dostupné z: https://dx.doi.org/10.48700/datst.t45hr-bcw17.

NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL a Matej ANTOL. 3DZD: Protein structural embeddings of ESM Atlas. 2024. Dostupné z: https://dx.doi.org/10.48700/datst.cd6zk-k0v44.

DAUBNER, Lukáš, Raimundas MATULEVICIUS, Barbora BÜHNOVÁ, Matej ANTOL, Michal RŮŽIČKA a Tomáš PITNER. A Case Study on the Impact of Forensic-Ready Information Systems on the Security Posture. Online. In Advanced Information Systems Engineering. Cham: Springer Nature Switzerland, 2023, s. 522-538. ISBN 978-3-031-34559-3. Dostupné z: https://dx.doi.org/10.1007/978-3-031-34560-9_31.

DAUBNER, Lukáš, Matulevičius RAIMUNDAS a Barbora BÜHNOVÁ. A Model of Qualitative Factors in Forensic-Ready Software Systems. Online. In Research Challenges in Information Science: Information Science and the Connected World. Cham: Springer Nature Switzerland, 2023, s. 308-324. ISBN 978-3-031-33079-7. Dostupné z: https://dx.doi.org/10.1007/978-3-031-33080-3_19.

CALATRAVA, Amanda, Hernán ASOREY, Jan ASTALOS, Alberto AZEVEDO, Francesco BENINCASA, Ignacio BLANQUER, Martin BOBAK, Francisco BRASILEIRO, Laia CODÓ, Laura del CANO, Borja ESTEBAN, Meritxell FERRET, Josef HANDL, Tobias KERZENMACHER, Valentin KOZLOV, Aleš KŘENEK, Ricardo MARTINS, Manuel PAVESIO, Antonio Juan RUBIO-MONTERO a Juan SÁNCHEZ-FERRERO. A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications. COMPUTER SCIENCE REVIEW. NETHERLANDS: ELSEVIER, 2023, roč. 49. ISSN 1574-0137. Dostupné z: https://dx.doi.org/10.1016/j.cosrev.2023.100571.

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DAUBNER, Lukáš, Martin MACÁK, Raimundas MATULEVIČIUS, Barbora BÜHNOVÁ, Sofija MAKSOVIĆ a Tomáš PITNER. Addressing insider attacks via forensic-ready risk management. JOURNAL OF INFORMATION SECURITY AND APPLICATIONS. ENGLAND: ELSEVIER, 2023, roč. 73, March 2023, s. 103433-103449. ISSN 2214-2126. Dostupné z: https://dx.doi.org/10.1016/j.jisa.2023.103433.

HOLZINGER, Andreas, Katharina KEIBLINGER, Petr HOLUB, Kurt ZATLOUKAL a Heimo MÜLLER. AI for Life: Trends in Artificial Intelligence for Biotechnology. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, roč. 74, č. 1, s. 16-24. ISSN 1871-6784. Dostupné z: https://dx.doi.org/10.1016/j.nbt.2023.02.001.

LAMOTHE, Lucie, Jennifer R B JENSEN, Hans IENASESCU, Ove J R GUSTAFSSON, Alban GAIGNARD, Dmitry REPCHEVSKY, Radka SVOBODOVÁ, Tomáš RAČEK, Adrián ROŠINEC, Matej ANTOL a Hervé MÉNAGER. An Evaluation of EDAM Coverage in the Tools Ecosystem and Prototype Integration of Galaxy and Workflowhub Systems. BioHackrXiv. 2023, s. 1-10. Dostupné z: https://dx.doi.org/10.37044/osf.io/79kje.

VOREL, Jiří, Nikol KMENTOVÁ, Christoph HAHN, Petr BUREŠ a Martin KAŠNÝ. An insight into the functional genomics and species classification of Eudiplozoon nipponicum (Monogenea, Diplozoidae), a haematophagous parasite of the common carp Cyprinus carpio. BMC Genomics. BioMed Central Ltd, 2023, roč. 24, č. 1, s. 1-20. ISSN 1471-2164. Dostupné z: https://dx.doi.org/10.1186/s12864-023-09461-8.

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ROŠINEC, Adrián a Klára MORAVCOVÁ. Beskar Cloud: OpenStack Deployment on Top of Kubernetes. In 12th Iberian Grid Conference. 2023.

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ŠREIBR, Sara, Jana ILGOVÁ, Pavel DOBEŠ, Jiří VOREL, Jacek MARCINIAK, Jana HURYCHOVÁ, Martin KAŠNÝ a Pavel HYRŠL. Bioactive molecules released by Heterorhabditis bacteriophora in response to various activation materials. In Virtual Nematology Conference 2023. 2023.

ZAVADIL, Jan, Tomáš ROHAN, Jaroslav JURÁČEK, Igor KISS, Lenka OSTŘÍŽKOVÁ, Vlastimil VÁLEK, Ondřej SLABÝ a Tomáš ANDRAŠINA. Biomarkery jako prognostické a prediktivní faktory u pacientů s hepatocelulárním karcinomem podstupujících radiologické onkologické intervence. Klinická onkologie. Praha: Česká lékařská společnost J. E. Purkyně, 2023, roč. 36, č. 2, s. 104-111. ISSN 0862-495X. Dostupné z: https://dx.doi.org/10.48095/ccko2023104.

DAUBNER, Lukáš, Raimundas MATULEVIČIUS, Barbora BÜHNOVÁ a Tomáš PITNER. BPMN4FRSS: An BPMN Extension to Support Risk-Based Development of Forensic-Ready Software Systems. Online. In Evaluation of Novel Approaches to Software Engineering. Cham: Springer Nature Switzerland, 2023, s. 20-43. ISBN 978-3-031-36596-6. Dostupné z: https://dx.doi.org/10.1007/978-3-031-36597-3_2.

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MACÁK, Martin, Tomáš REBOK, Matúš ŠTOVČIK, Mouzhi GE, Bruno ROSSI a Barbora BÜHNOVÁ. CopAS: A Big Data Forensic Analytics System. Online. In Proceedings of the 8th International Conference on Internet of Things, Big Data and Security IoTBDS - Volume 1. Setubal, Portugal: SciTePress, 2023, s. 150-161. ISBN 978-989-758-643-9. Dostupné z: https://dx.doi.org/10.5220/0011929000003482.

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DAUBNER, Lukáš a Adam POVAŽANEC. Data Loss Prevention Solution for Linux Endpoint Devices. Online. In ARES '23: Proceedings of the 18th International Conference on Availability, Reliability and Security. United States: Association for Computing Machinery, 2023, s. 1-10. ISBN 979-8-4007-0772-8. Dostupné z: https://dx.doi.org/10.1145/3600160.3605036.

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HEJTMÁNEK, Lukáš, Adrián ROŠINEC a Sebastian LUNA-VALERO. Easy Deployment of Dask and Jupyter Notebooks on Managed Kubernetes. In EGI Conference 2023. 2023.

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HERREROS, David, Roy R. LEDERMAN, James M. KRIEGER, Amaya JIMÉNEZ-MORENO, Marta MARTÍNEZ, David MYŠKA, David STŘELÁK, Jiří FILIPOVIČ, Carlos O. S. SORZANO a José M. CARAZO. Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials. Nature Communications. 2023, roč. 14, č. 1, s. 1-10. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-023-35791-y.

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GALLO, Matej, Vojtěch KRAJŇANSKÝ, Rudolf NENUTIL, Petr HOLUB a Tomáš BRÁZDIL. Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, roč. 78, December, s. 52-67. ISSN 1871-6784. Dostupné z: https://dx.doi.org/10.1016/j.nbt.2023.09.008.

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WITTNER, Rudolf, Cecilia MASCIA, Matej GALLO, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Jörg GEIGER a Petr HOLUB. Lightweight Distributed Provenance Model for Complex Real–world Environments. Scientific Data. Berlin: Nature Research, 2022, roč. 2022, č. 9, s. 1-19. ISSN 2052-4463. Dostupné z: https://dx.doi.org/10.1038/s41597-022-01537-6.

KUREČKA, Martin. Lower bound on the size of a quasirandom forcing set of permutations. COMBINATORICS PROBABILITY & COMPUTING. 2022, roč. 31, č. 2, s. 304-319. ISSN 0963-5483. Dostupné z: https://dx.doi.org/10.1017/S0963548321000298.

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PARDY, Filip, Jakub HYNŠT, Dana FIALOVÁ, Kristýna BRZOBOHATÁ, Lukáš HEJTMÁNEK a Šárka POSPÍŠILOVÁ. Reconstructing of the genome of Gregor Johann Mendel using state-of-the-art molecular and bioinformatics tools. In Mendel Genetics Conference 2022. 2022.

RAI, Ashutosh, Matej PIVOLUSKA, Souradeep SASMAL, Manik BANIK, Sibasish GHOSH a Martin PLESCH. Self-testing quantum states via nonmaximal violation in Hardy's test of nonlocality. PHYSICAL REVIEW A. UNITED STATES: AMER PHYSICAL SOC, 2022, roč. 105, č. 5, s. 1-8. ISSN 2469-9926. Dostupné z: https://dx.doi.org/10.1103/PhysRevA.105.052227.

FREXIA, Francesca, Cecilia MASCIA, Rudolf WITTNER, Markus PLASS, Heimo MÜLLER, Jörg GEIGER a Petr HOLUB. The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes. In Challenges of Trustable AI and Added-Value on Health. 2022. Dostupné z: https://dx.doi.org/10.3233/SHTI220489.

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DODA, M., Matej PIVOLUSKA a Martin PLESCH. Choice of mutually unbiased bases and outcome labeling affecting measurement outcome secrecy. Physical review A. New York: The American Physical Society, 2021, roč. 103, č. 3, s. 032206-32213. ISSN 2469-9926. Dostupné z: https://dx.doi.org/10.1103/PhysRevA.103.032206.

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NEUMANN, S.P., T. SCHEIDL, M. SELIMOVIC, Matej PIVOLUSKA, B. LIU, M. BOHMANN a R. URSIN. Model for optimizing quantum key distribution with continuous-wave pumped entangled-photon sources. Physical review A. New York: The American Physical Society, 2021, roč. 104, č. 2, s. 022406-22416. ISSN 2469-9926. Dostupné z: https://dx.doi.org/10.1103/PhysRevA.104.022406.

BLANCO SÁNCHEZ, José Miguel, Mouzhi GE a Tomáš PITNER. Modeling Inconsistent Data for Reasoners in Web of Things. Online. In Procedia Computer Science, Volume 192, 25th KES International Conference on Knowledge-Based and Intelligent Information and Engineering Systems, KES 2021. Szczecin: Elsevier, 2021, s. 1265-1273. ISSN 1877-0509. Dostupné z: https://dx.doi.org/10.1016/j.procs.2021.08.130.

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MBAREK, Bacem, Mouzhi GE a Tomáš PITNER. Trust-based Authentication for Smart Home Systems. Wireless Personal Communications. Springer, 2021, roč. 117, č. 3, s. 2157-2172. ISSN 0929-6212. Dostupné z: https://dx.doi.org/10.1007/s11277-020-07965-0.

MBAREK, Bacem, Mouzhi GE a Tomáš PITNER. Trust-based Detection Strategy against Replication Attacks in IoT. Online. In Makoto Takizawa, Leonard Barolli, Donald Elmazi. The 35th International Conference on Advanced Information Networking and Applications (AINA-2021). Springer International Publi. Toronto, Canada: Springer, 2021, s. 646-656. ISBN 978-3-030-75074-9. Dostupné z: https://dx.doi.org/10.1007/978-3-030-75075-6_53.

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ROČEK, Aleš, Michal JAVORNÍK, Karel SLAVÍČEK a Otto DOSTÁL. Zero Watermarking: Critical Analysis of Its Role in Current Medical Imaging. Journal of Digital Imaging. 2021, roč. 34, č. 1, s. 204-211. ISSN 0897-1889. Dostupné z: https://dx.doi.org/10.1007/s10278-020-00396-0.

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BRÁZDIL, Tomáš, David PORTEŠ, Jiří FILIPOVIČ, Jana HOZZOVÁ, Thomas EVANGELIDIS a Konstantinos TRIPSIANES. 4D-GRAPHS. 2021.

PETROVIČ, Filip, David STŘELÁK, Jana HOZZOVÁ, Jaroslav OĽHA, Richard TREMBECKÝ, Siegfried BENKNER a Jiří FILIPOVIČ. A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit. Future Generation Computer Systems. Elsevier, 2020, roč. 108, July, s. 161-177. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2020.02.069.

MACÁK, Martin, Mouzhi GE a Barbora BÜHNOVÁ. A Cross-domain Comparative Study of Big Data Architectures. International Journal of Cooperative Information Systems. 2020, roč. 29, č. 4, s. 1-27. ISSN 0218-8430. Dostupné z: https://dx.doi.org/10.1142/S0218843020300016.

ROSSI, Bruno. A Large-Scale Replication of Smart Grids Power Consumption Anomaly Detection. Online. In Gary Wills, Péter Kacsuk, and Victor Chang. Proceedings of the 5th International Conference on Internet of Things, Big Data and Security (IoTBDS). Setubal, Portugal: SciTePress, 2020, s. 288-295. ISBN 978-989-758-426-8. Dostupné z: https://dx.doi.org/10.5220/0009396402880295.

MBAREK, Bacem, Mouzhi GE a Tomáš PITNER. An Efficient Mutual Authentication Scheme for Internet of Things. Internet of Things Journal. ELSEVIER, 2020, roč. 9, č. 1, s. 1-9. ISSN 2543-1536. Dostupné z: https://dx.doi.org/10.1016/j.iot.2020.100160.

MBAREK, Bacem, Stanislav CHREN, Bruno ROSSI a Tomáš PITNER. An Enhanced Blockchain-Based Data Management Scheme for Microgrids. Online. In Barolli, L., Amato, F., Moscato, F., Enokido, T., Takizawa, M. Web, Artificial Intelligence and Network Applications (WAINA 2020). Caserta, Italy: Springer International Publishing, 2020, s. 766-775. ISBN 978-3-030-44037-4. Dostupné z: https://dx.doi.org/10.1007/978-3-030-44038-1_70.

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GEŠVINDR, David, Ondřej GASIOR a Barbora BÜHNOVÁ. Architecture design evaluation of PaaS cloud applications using generated prototypes: PaaSArch Cloud Prototyper tool. Journal of Systems and Software. Elsevier, 2020, roč. 169, November, s. 1-21. ISSN 0164-1212. Dostupné z: https://dx.doi.org/10.1016/j.jss.2020.110701.

RAČEK, Tomáš, Ondřej SCHINDLER, Dominik TOUŠEK, Vladimír HORSKÝ, Karel BERKA, Jaroslav KOČA a Radka SVOBODOVÁ. Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges. Nucleic acids research. Oxford: Oxford University Press, 2020, roč. 48, W1, s. "W591"-"W596", 6 s. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkaa367.

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MBAREK, Bacem, Mouzhi GE a Tomáš PITNER. Blockchain-based Access Control for IoT in Smart Home Systems. Online. In Proceedings of the 31st International Conference on Database and Expert Systems Applications - DEXA 2020. Bratislava, Slovakia: Springer, 2020, s. 17-32. ISBN 978-3-030-59050-5. Dostupné z: https://dx.doi.org/10.1007/978-3-030-59051-2_2.

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STREČANSKÝ, Peter, Stanislav CHREN a Bruno ROSSI. Comparing Maintainability Index, SIG Method, and SQALE for Technical Debt Identification. Scientific programming. Hindawi, 2020, roč. 2020, 20 Jul 2020, s. 1-14. ISSN 1058-9244. Dostupné z: https://dx.doi.org/10.1155/2020/2976564.

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MACÁK, Martin, Matúš ŠTOVČIK, Barbora BÜHNOVÁ a Michal MERJAVÝ. How well a multi-model database performs against its single-model variants: Benchmarking OrientDB with Neo4j and MongoDB. Online. In Proceedings of the 2020 Federated Conference on Computer Science and Information Systems. New York: IEEE, 2020, s. 463-470. ISBN 978-83-955416-7-4. Dostupné z: https://dx.doi.org/10.15439/2020F76.

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PERSIA, Fabio, Daniela D'AURIA a Mouzhi GE. Improving Learning System Performance with Multimedia Semantics. Online. In Proceedings of the 14th IEEE International Conference on Semantic Computing. San Diego, California, USA: IEEE, 2020, s. 238-241. ISBN 978-1-7281-6332-1. Dostupné z: https://dx.doi.org/10.1109/ICSC.2020.00050.

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MACÁK, Martin, Matúš ŠTOVČIK a Barbora BÜHNOVÁ. The Suitability of Graph Databases for Big Data Analysis: A Benchmark. Online. In Proceedings of the 5th International Conference on Internet of Things, Big Data and Security - Volume 1: IoTBDS. Neuveden: SciTePress, 2020, s. 213-220. ISBN 978-989-758-426-8. Dostupné z: https://dx.doi.org/10.5220/0009350902130220.

MACÁK, Martin, Ivan VANÁT, Michal MERJAVÝ, Tomáš JEVOČIN a Barbora BÜHNOVÁ. Towards Process Mining Utilization in Insider Threat Detection from Audit Logs. Online. In 2020 Seventh International Conference on Social Networks Analysis, Management and Security (SNAMS). New York: IEEE, 2020, s. 250-255. ISBN 978-0-7381-1180-3. Dostupné z: https://dx.doi.org/10.1109/SNAMS52053.2020.9336573.

DAUBNER, Lukáš, Martin MACÁK, Barbora BÜHNOVÁ a Tomáš PITNER. Towards verifiable evidence generation in forensic-ready systems. Online. In 2020 IEEE International Conference on Big Data (Big Data). Atlanta, United States: IEEE, 2020, s. 2264-2269. ISBN 978-1-7281-6251-5. Dostupné z: https://dx.doi.org/10.1109/BigData50022.2020.9378035.

MACHÁČKOVÁ, Táňa, Karolína TRACHTOVÁ, Vladimír PROCHÁZKA, Tomáš GROLICH, Martina FARKAŠOVÁ, Lukáš FIALA, Roman ŠEFR, Igor KISS, Matej SKROVINA, Michal DOSOUDIL, Ioana BERINDAN-NEAGOE, Marek SVOBODA, Ondřej SLABÝ a Zdeněk KALA. Tumor microRNAs Identified by Small RNA Sequencing as Potential Response Predictors in Locally Advanced Rectal Cancer Patients Treated With Neoadjuvant Chemoradiotherapy. CANCER GENOMICS & PROTEOMICS. ATHENS: INT INST ANTICANCER RESEARCH, 2020, roč. 17, č. 3, s. 249-257. ISSN 1109-6535. Dostupné z: https://dx.doi.org/10.21873/cgp.20185.

HRUBÁ, Marika. Úvod do library advocacy pro veřejné knihovny : e-learningový kurz. Online. 2020.

BUČEKOVÁ, Gabriela, Michal PAJTINKA a Radka SVOBODOVÁ. Validation of cycle conformation in Protein Data Bank. In ELIXIR CZ Annual Conference 2020. 2020.

DAUBNER, Lukáš, Martin MACÁK, Barbora BÜHNOVÁ a Tomáš PITNER. Verification of Forensic Readiness in Software Development: A Roadmap. Online. In Proceedings of the 35th Annual ACM Symposium on Applied Computing. New York, NY, USA: Association for Computing Machinery, 2020, s. 1658-1661. ISBN 978-1-4503-6866-7. Dostupné z: https://dx.doi.org/10.1145/3341105.3374094.

SEHNAL, David, Radka SVOBODOVÁ, K. BERKA, Lukáš PRAVDA, Adam MIDLIK a Jaroslav KOČA. Visualization and Analysis of Protein Structures with LiteMol Suite. Online. In STRUCTURAL BIOINFORMATICS: METHODS AND PROTOCOLS. TOTOWA: HUMANA PRESS INC, 2020, s. 1-13. 2112. ISBN 978-1-0716-0270-6. Dostupné z: https://dx.doi.org/10.1007/978-1-0716-0270-6_1.

VODÁK, Rostislav, Michal BÍL, Tomáš SVOBODA, Zuzana KŘIVÁNKOVÁ, Jan KUBEČEK, Tomáš REBOK a Petr HLINĚNÝ. A deterministic approach for rapid identification of the critical links in networks. PLOS ONE. United States: Public Library of Science, 2019, roč. 14, č. 7, s. 1-18. ISSN 1932-6203. Dostupné z: https://dx.doi.org/10.1371/journal.pone.0219658.

STŘELÁK, David, Carlos Óscar S. SORZANO, José María CARAZO a Jiří FILIPOVIČ. A GPU acceleration of 3-D Fourier reconstruction in cryo-EM. The International Journal of High Performance Computing Applications. SAGE Publishing, 2019, roč. 33, č. 5, s. 948-959. ISSN 1094-3420. Dostupné z: https://dx.doi.org/10.1177/1094342019832958.

BANGUI, Hind, Mouzhi GE a Barbora BÜHNOVÁ. A Research Roadmap of Big Data Clustering Algorithms for Future Internet of Things. International Journal of Organizational and Collective Intelligence. IGI, 2019, roč. 9, č. 2, s. 16-30. ISSN 1947-9344. Dostupné z: https://dx.doi.org/10.4018/IJOCI.2019040102.

GE, Mouzhi, Fabio PERSIA a Daniela D'AURIA. Advanced Recommender Systems by Exploiting Social Networks. In Proceedings of the IEEE International Conference on Humanized Computing and Communication. Laguna Hills, CA, USA: IEEE, 2019, s. 118-125. ISBN 978-1-72814-125-1. Dostupné z: https://dx.doi.org/10.1109/HCC46620.2019.00025.

QISHAN, Yang, Mouzhi GE a Markus HELFERT. Analysis of Data Warehouse Architectures: Modeling and Classification. In Proceedings of the 21st International Conference on Enterprise Information Systems. Crete, Greece: SciTePress, 2019, s. 604-611. ISBN 978-989-758-372-8. Dostupné z: https://dx.doi.org/10.5220/0007728006040611.

SMRČKA, Martin, Alena KOPKOVÁ, Jiří ŠÁNA, Marek VEČEŘA, J OPPELT, Karolína TRACHTOVÁ, R JANČÁLEK, Pavel FADRUS a Ondřej SLABÝ. Analysis of microRNA levels in cerebrospinal fluid of patients with primary brain tumors and metastases. In 2019 WFNS Special World Congress, 9. – 12. 9. 2019, Peking, Čína. 2019.

BÜHNOVÁ, Barbora, Lucie JURYSTOVÁ a Dita PŘIKRYLOVÁ. Assisting women in career change towards software engineering: experience from Czechitas NGO. Online. In Proceedings of the 13th European Conference on Software Architecture - Volume 2. New York, NY, USA: ACM, 2019, s. 88-93. ISBN 978-1-4503-7142-1. Dostupné z: https://dx.doi.org/10.1145/3344948.3344967.

RAČEK, Tomáš, Ondřej SCHINDLER, Vladimír HORSKÝ, Jaroslav KOČA, Dominik TOUŠEK a Radka SVOBODOVÁ VAŘEKOVÁ. AtomicChargeCalculator II. In ELIXIR CZ Annual Conference 2019. 2019. ISBN 978-80-86241-61-6.

REBOK, Tomáš. Big Data - overview, basic concepts and practical use in research. In Alliance4Life 5th project meeting. 2019.

LIPČÁK, Peter, Martin MACÁK a Bruno ROSSI. Big Data Platform for Smart Grids Power Consumption Anomaly Detection. Online. In Proceedings of the 2019 Federated Conference on Computer Science and Information Systems. New York: IEEE, 2019, s. 771-780. ISBN 978-1-5386-8005-6. Dostupné z: https://dx.doi.org/10.15439/2019F210.

MÍČ, Vladimír, David NOVÁK a Pavel ZEZULA. Binary Sketches for Secondary Filtering. ACM Transactions on Information Systems. New York: ACM Press, 2019, roč. 37, č. 1, s. "1:1"-"1:28", 28 s. ISSN 1046-8188. Dostupné z: https://dx.doi.org/10.1145/3231936.

ANTOL, Matej a Vlastislav DOHNAL. BM-index: Balanced Metric Space Index based on Weighted Voronoi Partitioning. In Lecture Notes in Computer Science. Advances in Databases and Information Systems, 23th East European Conference, ADBIS 2019. LNCS 11695. Cham: Springer International Publishing, 2019, s. 337-353. ISBN 978-3-030-28729-0. Dostupné z: https://dx.doi.org/10.1007/978-3-030-28730-6_21.

ŠTOURAČ, Jan, O. VAVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, Gabriela Filipa FONSECA PINTO, Andrea SCHENKMAYEROVÁ, Jiří DAMBORSKÝ a David BEDNÁŘ. Caver web: identification of tunnels and channels in proteins and analysis of ligand transport. In European Biotechnology Congress. 2019. ISSN 0168-1656. Dostupné z: https://dx.doi.org/10.1016/j.jbiotec.2019.05.251.

ŠTOURAČ, Jan, Ondřej VÁVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, José Gaspar RANGEL PAMPLONA PIZARRO PINTO, Jan BREZOVSKÝ, Jiří DAMBORSKÝ a David BEDNÁŘ. Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic acids research. Oxford: Oxford University Press, 2019, roč. 47, W1, s. 414-422. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkz378.

VÁVRA, Ondřej, Jiří FILIPOVIČ, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Jan ŠTOURAČ, Luděk MATYSKA a Jiří DAMBORSKÝ. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinformatics. Oxford: Oxford University Press, 2019, roč. 35, č. 23, s. 4986-4993. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btz386.

KOPKOVÁ, Alena, Jiří ŠÁNA, Táňa MACHÁČKOVÁ, Marek VEČEŘA, Lenka RADOVÁ, Karolína TRACHTOVÁ, Václav VYBÍHAL, Martin SMRČKA, Tomáš KAZDA, Ondřej SLABÝ a Pavel FADRUS. Cerebrospinal Fluid MicroRNA Signatures as Diagnostic Biomarkers in Brain Tumors. Cancers. BASEL: MDPI, 2019, roč. 11, č. 10, s. 1-12. ISSN 2072-6694. Dostupné z: https://dx.doi.org/10.3390/cancers11101546.

GE, Mouzhi, Stanislav CHREN, Bruno ROSSI a Tomáš PITNER. Data Quality Management Framework for Smart Grid Systems. Online. In Abramowicz W., Corchuelo R. Proceedings of the 22nd International Conference on Business Information Systems. Switzerland: Springer, 2019, s. 299-310. ISBN 978-3-030-20481-5. Dostupné z: https://dx.doi.org/10.1007/978-3-030-20482-2_24.

JAVORNÍK, Michal, Jana KOMÁRKOVÁ a Martin HUSÁK. Decision Support for Mission-Centric Cyber Defence. Online. In Proceedings of the 14th International Conference on Availability, Reliability and Security (ARES 2019). New York: ACM, 2019, s. "34:1"-"34:8", 8 s. ISBN 978-1-4503-7164-3. Dostupné z: https://dx.doi.org/10.1145/3339252.3340522.

CAPUTO, Francesco, Vincenzo FORMISANO, Barbora BÜHNOVÁ a Leonard WALLETZKÝ. Depicting a Conceptual Framework for Smart City. World Review of Entrepreneurship, Management and Sustainable Development. Inderscience Publishers (IEL), 2019, roč. 15, č. 3, s. 379-392. ISSN 1746-0573. Dostupné z: https://dx.doi.org/10.1504/WREMSD.2019.099418.

GEŠVINDR, David, Barbora BÜHNOVÁ a Jaroslav DAVÍDEK. Design of Scalable and Resilient Applications using Microservice Architecture in PaaS Cloud. Online. In Proceedings of the 14th International Conference on Software Technologies - Volume 1: ICSOFT. Neuveden: SciTePress, 2019, s. 619-630. ISBN 978-989-758-379-7. Dostupné z: https://dx.doi.org/10.5220/0007842906190630.

CIOROAICA, Emilia, Thomas KUHN a Barbora BÜHNOVÁ. (Do not) trust in ecosystems. Online. In Proceedings of the 41st International Conference on Software Engineering: New Ideas and Emerging Results. USA: IEEE Press, 2019, s. 9-12. ISBN 978-1-72811-758-4. Dostupné z: https://dx.doi.org/10.1109/ICSE-NIER.2019.00011.

OĽHA, Jaroslav, Jana HOZZOVÁ, Jan FOUSEK a Jiří FILIPOVIČ. Exploiting historical data: pruning autotuning spaces and estimating the number of tuning steps. In Ulrich Schwardmann, Christian Boehme, Dora B. Heras, Valeria Cardellini, Emmanuel Jeannot, Antonio Salis, Claudio Schifanella, Ravi Reddy Manumachu, Dieter Schwamborn, Laura Ricci, Oh Sangyoon, Thomas Gruber, Laura Antonelli, Stephen L. Scott. Lecture Notes in Computer Science. Cham, Switzerland: Springer, Cham, 2019, s. 295-307. ISBN 978-3-030-48339-5. Dostupné z: https://dx.doi.org/10.1007/978-3-030-48340-1_23.

D'AURIA, Daniela, Mouzhi GE a Fabio PERSIA. Exploiting Recommender Systems in Collaborative Healthcare. In Proceedings of the 16th International Symposium on Pervasive Systems, Algorithms and Networks. Naples, Italy: Springer Communications in Computer and Information Science, 2019, s. 71-82. ISBN 978-3-030-30142-2. Dostupné z: https://dx.doi.org/10.1007/978-3-030-30143-9_6.

WALLETZKÝ, Leonard, Luca CARRUBBO a Mouzhi GE. Exploring complex service design: Understanding the Diamonds of Context. Online. In Francesco Polese. Online Proceedings of Naples Forum on Service. Italy: University of Salerno, 2019.

GE, Mouzhi a Fabio PERSIA. Factoring Personalization in Social Media Recommendations. In Proceedings of the 13th IEEE International Conference on Semantic Computing. California, USA: IEEE, 2019, s. 344-347. ISBN 978-1-5386-6783-5. Dostupné z: https://dx.doi.org/10.1109/ICOSC.2019.8665624.

RANGEL PAMPLONA PIZARRO PINTO, José Gaspar, Ondřej VÁVRA, Jiří FILIPOVIČ, Jan ŠTOURAČ, David BEDNÁŘ a Jiří DAMBORSKÝ. Fast Screening of Inhibitor Binding/Unbinding using Novel Software Tool CaverDock. FRONTIERS IN CHEMISTRY. LAUSANNE: FRONTIERS MEDIA SA, 2019, roč. 7, OCT 29 2019, s. 1-14. ISSN 2296-2646. Dostupné z: https://dx.doi.org/10.3389/fchem.2019.00709.

CHREN, Stanislav, Bruno ROSSI, Barbora BÜHNOVÁ, Mouzhi GE a Tomáš PITNER. Industrial Involvement In Information System Education: Lessons Learned from a Software Quality Course. Online. In Proceedings of 28th International Conference on Information Systems Development. Toulon, France: AIS, 2019, s. 1-12. ISBN 978-2-9571876-0-7.

SAUNDERS, Gary, Michael BAUDIS, Regina BECKER, Sergi BELTRAN, Christophe BÉROUD, Ewan BIRNEY, Cath BROOKSBANK, Søren BRUNAK, Marc Van den BULCKE, Rachel DRYSDALE, Salvador CAPELLA-GUTIERREZ, Paul FLICEK, Francesco FLORINDI, Peter GOODHAND, Ivo GUT, Jaap HERINGA, Petr HOLUB, Jef HOOYBERGHS, Nick JUTY, Thomas M KEANE, Jan O KORBEL, Ilkka LAPPALAINEN, Brane LESKOSEK, Gert MATTHIJS, Michaela Th MAYRHOFER, Andres METSPALU, Arcadi NAVARRO, Steven NEWHOUSE, Tommi NYRÖNEN, Angela PAGE, Bengt PERSSON, Aarno PALOTIE, Helen PARKINSON, Jordi RAMBLA, David SALGADO, Erik STEINFELDER, Morris A SWERTZ, Alfonso VALENCIA, Susheel VARMA, Niklas BLOMBERG a Serena SCOLLEN. Leveraging European infrastructures to access 1 million human genomes by 2022. Nature Reviews Genetics. 2019, roč. 20, č. 11, s. 692-701, 9 s. ISSN 1471-0056. Dostupné z: https://dx.doi.org/10.1038/s41576-019-0156-9.

HRUBÁ, Marika. Library advocacy– efektivní prosazování zájmů knihoven : představení e-learningového kurzu „Úvod do library advocacy pro veřejné knihovny". Praha: Sdružení knihoven ČR, 2019.

RŮŽIČKA, Michal, Andrea MIRANDA, Lukáš HEJTMÁNEK, Zdeněk VAŠEK, Vlastimil KREJČÍŘ a Miroslav BARTOŠEK. Metodika bitové ochrany digitálních dat. 2019.

VADICAMO, Lucia, Vladimír MÍČ, Falchi FABRIZIO a Pavel ZEZULA. Metric Embedding into the Hamming Space with the n-Simplex Projection. In Giuseppe Amato, Claudio Gennaro, Vincent Oria, Milos Radovanovic. Similarity Search and Applications: 12th International Conference, SISAP 2019, Newark, New Jersey, USA, October 2-4, 2019, Proceedings. Cham: Springer International Publishing, 2019, s. 265-272. ISBN 978-3-030-32046-1. Dostupné z: https://dx.doi.org/10.1007/978-3-030-32047-8_23.

CHREN, Stanislav, Barbora BÜHNOVÁ, Martin MACÁK, Lukáš DAUBNER a Bruno ROSSI. Mistakes in UML Diagrams: Analysis of Student Projects in a Software Engineering Course. Online. In Sarah Beecham, Daniela Damian. Proceedings of the 41st International Conference on Software Engineering: Software Engineering Education and Training. Piscataway, NJ, USA: IEEE Press, 2019, s. 100-109. ISBN 978-1-7281-1000-4. Dostupné z: https://dx.doi.org/10.1109/ICSE-SEET.2019.00019.

WALLETZKÝ, Leonard, Luca CARUBBO a Mouzhi GE. Modelling Service Design and Complexity for Multi-contextual Applications in Smart Cities. Online. In 2019 23rd International Conference on System Theory, Control and Computing (ICSTCC). Sinaia, Romania: IEEE, 2019, s. 101-106. ISBN 978-1-7281-0699-1. Dostupné z: https://dx.doi.org/10.1109/ICSTCC.2019.8885800.

BLAŽEK, Pavel, Petr KOVÁCS, David MIKSTEIN, Jitka SPURNÁ a Jan TAJOVSKÝ. MUNI 100 — Příběh GISu. Online. In Sborník příspěvků 28. konference GIS ESRI. 2019. vyd. Praha: ARCDATA PRAHA, s.r.o., 2019, s. 39-42. ISBN 978-80-905316-7-3.

ČELEDA, Pavel, Jakub ČEGAN, Martin DRAŠAR, Ivo NUTÁR, Jiří RÁJA, Tomáš REBOK, Andrej TOMČI a Daniel TOVARŇÁK. Nástroje pro ověřování bezpečnosti SW/HW a simulaci útoků na prvky kritické informační infrastruktury. 2019.

GEŠVINDR, David, Ondřej GASIOR a Barbora BÜHNOVÁ. PaaSArch Cloud Prototyper Tool. 2019.

GEŠVINDR, David a Barbora BÜHNOVÁ. PaaSArch: Quality Evaluation Tool for PaaS Cloud Applications Using Generated Prototypes. Online. In 2019 IEEE International Conference on Software Architecture Companion (ICSA-C). Neuveden: IEEE, 2019, s. 170-173. ISBN 978-1-7281-1876-5. Dostupné z: https://dx.doi.org/10.1109/ICSA-C.2019.00038.

MATE, Sebastian, Marvin KAMPF, Wolfgang RÖDLE, Stefan KRAUS, Rumyana PROYNOVA, Kaisa SILANDER, Lars EBERT, Martin LABLANS, Christina SCHÜTTLER, Christian KNELL, Niina EKLUND, Michael HUMMEL, Petr HOLUB a Hans-Ulrich PROKOSCH. Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC. Appl Clin Inform. 2019, roč. 10, č. 04, s. 679-692. Dostupné z: https://dx.doi.org/10.1055/s-0039-1695793.

SCHINDLER, Ondřej, Tomáš RAČEK, Radka SVOBODOVÁ VAŘEKOVÁ a Jaroslav KOČA. Partial atomic charges for proteins. In ELIXIR CZ Annual Conference 2019. 2019. ISBN 978-80-86241-61-6.

PETERS, K, J BRADBURY, S BERGMANN, M CAPUCCINI, M CASCANTE, Atauri P DE, TMD EBBELS, C FOGUET, R GLEN, A GONZALEZ-BELTRAN, UL GUNTHER, E HANDAKAS, T HANKEMEIER, K HAUG, S HERMAN, Petr HOLUB, M IZZO, D JACOB, D JOHNSON, F JOURDAN, N KALE, I KARAMAN, B KHALILI, PE KHONSARI, K KULTIMA, S LAMPA, A LARSSON, C LUDWIG, P MORENO, S NEUMANN, JA NOVELLA, O Donovan C, JTM PEARCE, A PELUSO, ME PIRAS, L PIREDDU, MAC REED, P ROCCA-SERRA, P ROGER, A ROSATO, R RUEEDI, C RUTTKIES, N SADAWI, RM SALEK, SA SANSONE, V SELIVANOV, O SPJUTH, D SCHOBER, EA THEVENOT, M TOMASONI, M VAN RIJSWIJK, M VAN VLIET, MR VIANT, RJM WEBER, G ZANETTI a C STEINBECK. PhenoMeNal: processing and analysis of metabolomics data in the cloud. GIGASCIENCE. OXFORD: OXFORD UNIV PRESS, 2019, roč. 8, č. 2, 12 s. ISSN 2047-217X. Dostupné z: https://dx.doi.org/10.1093/gigascience/giy149.

HRUBÁ, Marika. Pozvání do kurzu Úvod do library advocacy pro veřejné knihovny. Duha. Brno: Moravská zemská knihovna, 2019, roč. 33, č. 4, s. 30-31. ISSN 0862-1985.

LHOTÁK, Martin, Zdeněk VAŠEK a Michal RŮŽIČKA. Projekt ARCLib – vývoj open-source řešení pro dlouhodobou archivaci digitálních dokumentů pro knihovny a další paměťové instituce – aktuální stav. In LTP 2019: Nové trendy a východiská pri budovaní LTP archívov: zborník príspevkov zo 4. medzinárodnej konferencie o dlhodobej archivácii. Bratislava: Univerzitná knižnica v Bratislave, 2019, s. 53-63. ISBN 978-80-89303-77-9.

BANGUI, Hind, Mouzhi GE a Barbora BÜHNOVÁ. Quality Management for Big 3D Data Analytics: A Case Study of Protein Data Bank. Online. In Proceedings of the 4th International Conference on Internet of Things, Big Data and Security - Volume 1. Crete, Greece: SciTePress, 2019, s. 286-293. ISBN 978-989-758-369-8. Dostupné z: https://dx.doi.org/10.5220/0007717402860293.

LAMBA, Vikas, Nikola ŠIMKOVÁ a Bruno ROSSI. Recommendations for Smart Grid Security Risk Management. Cyber-Physical Systems. Taylor & Francis, 2019, roč. 5, č. 2, s. 92-118. ISSN 2333-5785. Dostupné z: https://dx.doi.org/10.1080/23335777.2019.1600035.

TRANG, Le Hong, Hind BANGUI, Mouzhi GE a Barbora BÜHNOVÁ. Scaling Big Data Applications in Smart City with Coresets. Online. In Proceedings of the 8th International Conference on Data Science, Technology and Applications - Volume 1. Prague, Czech Republic: SciTePress, 2019, s. 357-363. ISBN 978-989-758-377-3. Dostupné z: https://dx.doi.org/10.5220/0007958803570363.

HRABOVSKÁ, Katarína, Nikola ŠIMKOVÁ, Bruno ROSSI a Tomáš PITNER. Smart Grids and Software Testing Process Models. Online. In Ruzicka, J. 2019 Smart City Symposium Prague (SCSP). New York: IEEE, 2019, s. 1-6. ISBN 978-1-72810-497-3. Dostupné z: https://dx.doi.org/10.1109/SCSP.2019.8805718.

ČELEDA, Pavel, Jakub ČEGAN, Kamil ANDONIADIS, Michal BERAN, František HRDINA, Tomáš JIRSÍK, Daniel KOUŘIL, Michal MAZOUREK, Radek OŠLEJŠEK, Michal PROCHÁZKA, Daniel TOVARŇÁK, Petr VELAN, Martin VIZVÁRY, Vadim JANOVSKIJ a Kristína ZÁKOPČANOVÁ. Software pro detekci a analýzu napadení KII. 2019.

ČELEDA, Pavel, Jakub ČEGAN, Kamil ANDONIADIS, Milan ČERMÁK, Jan DUDA, Vlastimil HOLER, Ľuboš HYŽÁK, Boris JADUŠ, Jakub KADAŠI, David LEŠKA, Martin MACHÁČ, Ivo NUTÁR, Radek OŠLEJŠEK, Dominik PILÁR, Tomáš PLESNÍK, Michal PROCHÁZKA, Tomáš REBOK, Vít RUSŇÁK, Miloslav STANĚK, Pavel ŠEDA, Valdemar ŠVÁBENSKÝ, Daniel TOVARŇÁK, Petr VELAN, Martin VIZVÁRY, Jan VYKOPAL a Tatiana ZBONČÁKOVÁ. Software pro simulaci obecných i kritických informačních infrastruktur. 2019.

CHREN, Stanislav, Radoslav MIČKO, Barbora BÜHNOVÁ a Bruno ROSSI. STRAIT: A Tool for Automated Software Reliability Growth Analysis. Online. In Margaret-Anne Storey. Proceedings of the 16th International Conference on Mining Software Repositories. Piscataway, NJ, USA: ACM, 2019, s. 105-110. ISBN 978-1-7281-3412-3. Dostupné z: https://dx.doi.org/10.1109/MSR.2019.00025.

ISON, Jon, Hans IENASESCU, Piotr CHMURA, Emil RYDZA, Hervé MÉNAGER, Matúš KALAŠ, Veit SCHWÄMMLE, Björn GRÜNING, Niall BEARD, Rodrigo LOPEZ, Severine DUVAUD, Heinz STOCKINGER, Bengt PERSSON, Radka SVOBODOVÁ VAŘEKOVÁ, Tomáš RAČEK, Jiří VONDRÁŠEK, Hedi PETERSON, Ahto SALUMETS, Inge JONASSEN, Rob HOOFT, Tommi NYRÖNEN, Alfonso VALENCIA, Salvador CAPELLA, Josep GELPÍ, Federico ZAMBELLI, Babis SAVAKIS, Brane LESKOŠEK, Kristoffer RAPACKI, Christophe BLANCHET, Rafael JIMENEZ, Arlindo OLIVEIRA, Gert VRIEND, Olivier COLLIN, Jacques van HELDEN, Peter LØNGREEN a Søren BRUNAK. The bio.tools registry of software tools and data resources for the life sciences. GENOME BIOLOGY. LONDON: BIOMED CENTRAL LTD, 2019, roč. 20, č. 164, s. 1-4. ISSN 1474-760X. Dostupné z: https://dx.doi.org/10.1186/s13059-019-1772-6.

ŠTEFANKO, Martin, Ondřej CHALOUPKA a Bruno ROSSI. The Saga Pattern in a Reactive Microservices Environment. Online. In Marten van Sinderen and Leszek Maciaszek. 14th International Conference on Software Technologies (ICSOFT 2019). Prague: SciTePress, 2019, s. 483-490. ISBN 978-989-758-379-7. Dostupné z: https://dx.doi.org/10.5220/0007918704830490.

MAŠKA, Martin, Tereza NEČASOVÁ, David WIESNER, Dmitry SOROKIN, Igor PETERLÍK, Vladimír ULMAN a David SVOBODA. Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy. Online. In 26th IEEE International Conference on Image Processing. Taipei: IEEE, 2019, s. 819-823. ISBN 978-1-5386-6249-6. Dostupné z: https://dx.doi.org/10.1109/ICIP.2019.8803721.

CIOROAICA, Emilia, Stanislav CHREN, Thomas KUHN, Barbora BÜHNOVÁ a Dimitar DIMITROV. Towards Creation of a Reference Architecture for Trust-Based Digital Ecosystems. In Proceedings of European Conference on Software Architecture (ECSA 2019) Workshops. Paris, France: ACM, 2019, s. 273-276. ISBN 978-1-4503-7142-1. Dostupné z: https://dx.doi.org/10.1145/3344948.3344973.

MORRIS, Chris, Paolo ANDREETTO, Lucia BANCI, Alexandre M J J BONVIN, Grzegorz CHOJNOWSKI, Laura del CANO, José Marıa CARAZO, Pablo CONESA, Susan DAENKE, George DAMASKOS, Andrea GIACHETTI, Natalie E C HALEY, Maarten L HEKKELMAN, Philipp HEUSER, Robbie P JOOSTEN, Daniel KOUŘIL, Aleš KŘENEK, Tomáš KULHÁNEK, Victor S LAMZIN, Nurul NADZIRIN, Anastassis PERRAKIS, Antonio ROSATO, Fiona SANDERSON, Joan SEGURA, Joerg SCHAARSCHMIDT, Egor SOBOLEV, Sergio TRALDI, Mikael E TRELLET, Sameer VELANKAR, Marco VERLATO a Martyn WINN. West-Life: A Virtual Research Environment for structural biology. Journal of Structural Biology: X. 2019, roč. 1, January - March 2019, s. 1-8. ISSN 2590-1524. Dostupné z: https://dx.doi.org/10.1016/j.yjsbx.2019.100006.

BÜHNOVÁ, Barbora a Dita PŘIKRYLOVÁ. Women Want to Learn Tech: Lessons from the Czechitas Education Project. Online. In Proceedings of the 2nd International Workshop on Gender Equality in Software Engineering. USA: IEEE Press, 2019, s. 25-28. ISBN 978-1-72812-245-8. Dostupné z: https://dx.doi.org/10.1109/GE.2019.00013.

GE, Mouzhi a Fabio PERSIA. A Generalized Evaluation Framework for Multimedia Recommender Systems. International Journal of Semantic Computing. World Scientific, 2018, roč. 12, č. 4, s. 541-557. ISSN 1793-351X. Dostupné z: https://dx.doi.org/10.1142/S1793351X18500046.

LIPČÁK, Jakub a Bruno ROSSI. A Large-Scale Study on Source Code Reviewer Recommendation. Online. In 44th Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2018. Not specified: IEEE, 2018, s. 378-387. ISBN 978-1-5386-7383-6. Dostupné z: https://dx.doi.org/10.1109/SEAA.2018.00068.

PAZÚRIKOVÁ, Jana, Jaroslav OĽHA, Aleš KŘENEK a Vojtěch SPIWOK. Acceleration of Mean Square Distance Calculations with Floating Close Structure in Metadynamics Simulations. arXiv, 2018, 22 s. arXiv:1801.02362.

KIŠŠ, Filip a Bruno ROSSI. Agile to Lean Software Development Transformation: A Systematic Literature Review. Online. In 2018 Federated Conference on Computer Science and Information Systems (FedCSIS). Not specified: IEEE, 2018, s. 969-973. ISBN 978-83-949419-5-6. Dostupné z: https://dx.doi.org/10.15439/2018F53.

GE, Mouzhi, Hind BANGUI a Barbora BÜHNOVÁ. Big Data for Internet of Things: A Survey. Future Generation Computer Systems. Elsevier, 2018, roč. 87, č. 1, s. 601-614. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2018.04.053.

TRACHTOVÁ, Karolína, Jan OPPELT, Kateřina AMRUZ ČERNÁ a Marek MRÁZ. Bioinformatic analysis of microRNAs and long non-coding RNAs in malignant B cells. In RNA and Disease, Uppsala, Sweden. 2018.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Dan POLANSKÝ, Karel BERKA a Jaroslav KOČA. bio.tools Sum – tool for exploration of summary information about bioinformatics services in bio.tools. In F1000Research. 2018. Dostupné z: https://dx.doi.org/10.7490/f1000research.1115564.1.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ a Jaroslav KOČA. CCL - Charge Calculation Language. In ELIXIR CZ Annual Conference 2018. 2018. ISBN 978-80-86241-60-9.

LINDEN, Mikael, Michal PROCHÁZKA, Ilkka LAPPALAINEN, Dominik František BUČÍK, Pavel VYSKOČIL, Martin KUBA, Sami SILÉN, Peter BELMANN, Alexander SCZYRBA, Steven NEWHOUSE, Luděk MATYSKA a Tommi NYRÖNEN. Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research. F1000 Research Ltd., 2018, roč. 7, č. 2018, s. 1-16. ISSN 2046-1402. Dostupné z: https://dx.doi.org/10.12688/f1000research.15161.1.

KNÍŽEK, Jiří, Lubomír PAVLIŠKA, Václav PROCHÁZKA, Adéla VRTKOVÁ, Ladislav BERÁNEK, Pavel BOUCHAL, Bořivoj VOJTĚŠEK, Rudolf NENUTIL a Martin KUBA. Computation of Identification of a Gnostical Regression Model, Robust to Both Input and Output Disturbances with the Help of Parallel Computing–Basic Version. International Journal of Mathematics and Computation™. CESER, 2018, roč. 29, č. 2, s. 29-58. ISSN 0974-5718.

SUCHÁNKOVÁ, Pavla a Radka SVOBODOVÁ VAŘEKOVÁ. Connection of glycoinformatics databases with Pubchem. In ENBIK. 2018. ISBN 978-80-7592-017-1.

STŘELÁK, David a Jiří FILIPOVIČ. cuFFTAdvisor. 2018.

MINISTR, Jan, Tomáš PITNER a Nikola ŠIMKOVÁ. Cybersecurity Qualifications. Online. In Ministr Jan, Tvrdíková Milena. Proceedings of the 21st International Conference on Information Technology for Practice. Ostrava: VŠB-Technical University of Ostrava, 2018, s. 141-146. ISBN 978-80-248-4196-0.

YANG, Qishan, Mouzhi GE a Markus HELFERT. Data Quality Problems in TPC-DI Based Data Integration Processes. Online. In Enterprise Information Systems. Germany: Springer Lecture Notes in Business Information Processing, 2018, s. 57-73. 321. ISBN 978-3-319-93374-0. Dostupné z: https://dx.doi.org/10.1007/978-3-319-93375-7_4.

TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Dynamic Reconfiguration in Multigroup Multicast Routing under Uncertainty. Journal of Heuristics. Springer, 2018, roč. 24, č. 3, s. 395-423. ISSN 1381-1231. Dostupné z: https://dx.doi.org/10.1007/s10732-017-9339-8.

FOUSEK, Jan. Efficient sparse matrix-delayed vector multiplication for discretized neural field model. The Journal of Supercomputing. Springer US, 2018, roč. 74, č. 5, s. 1863-1884. ISSN 0920-8542. Dostupné z: https://dx.doi.org/10.1007/s11227-017-2194-4.

RAČEK, Tomáš, Ondřej SCHINDLER, Radka SVOBODOVÁ VAŘEKOVÁ a Jaroslav KOČA. Empirical methods for calculation of partial atomic charges – applicability for proteins? In ENBIK2018. 2018. ISBN 978-80-7592-017-1.

HOLUB, Petr, Florian KOHLMAYER, Fabian PRASSER, Michaela Theresia MAYRHOFER, Irene SCHLUNDER, Gillian M. MARTIN, Sara CASATI, Lefteris KOUMAKIS, Andrea WUTTE, Lukas KOZERA, Dominik STRAPAGIEL, Gabriele ANTON, Gianluigi ZANETTI, Osman Ugur SEZERMAN, Maimuna MENDY, Dalibor VALÍK, Marialuisa LAVITRANO, Georges DAGHER, Kurt ZATLOUKAL, GertJan B. VAN OMMEN a Jan-Eric LITTON. Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2018, roč. 16, č. 2, s. 97-105. ISSN 1947-5535. Dostupné z: https://dx.doi.org/10.1089/bio.2017.0110.

GE, Mouzhi a Fabio PERSIA. Evaluation in Multimedia Recommender Systems: A Practical Guide. In Proceedings of the 12th IEEE International Conference on Semantic Computing. California, USA: IEEE, 2018, s. 294-297. ISBN 978-1-5386-4407-2. Dostupné z: https://dx.doi.org/10.1109/ICSC.2018.00050.

BANGUI, Hind, Mouzhi GE a Barbora BÜHNOVÁ. Exploring Big Data Clustering Algorithms for Internet of Things Applications. Online. In Proceedings of the 3rd International Conference on Internet of Things, Big Data and Security. Madeira, Portugal: SCITEPRESS, 2018, s. 269-276. ISBN 978-989-758-296-7. Dostupné z: https://dx.doi.org/10.5220/0006773402690276.

PERSIA, Fabio, Mouzhi GE a Daniela D'AURIA. How to exploit Recommender Systems in Social Media. Online. In Proceedings of the IEEE 19th International Conference on Information Reuse and Integration for Data Science. Salt Lake City: IEEE, 2018, s. 537-541. ISBN 978-1-5386-2659-7. Dostupné z: https://dx.doi.org/10.1109/IRI.2018.00085.

KREJČÍŘ, Vlastimil. Indexování a vyhledávání matematických formulí. Online. Praha: Albertina icome Praha, 2018, 6 s. ISSN 1801-2213.

SALOMONI, Davide, Luciano GAIDO, Isabel Campos PLASENCIA, Jesus E Marco de LUCAS, Peter SOLAGNA, Jorge GOMES, Luděk MATYSKA, P FUHRMAN, Marcus HARDT, Giacinto DONVITO, L DUTKA, Marcin Pl o CIENNIK, Roberto BARBERA, Cristina AIFTIMIEI, Ignacio BLANQUER, Andrea CECCANTI, Mario DAVID, Alvaro Lopez GARCIA, German MOLTO, P ORVIZ, Zdeněk SUSTR, M VILJOEN, Fernando AGUILAR, L ALVES, Alexandre BONVING, Riccardo BRUNO, D DAVIDOVIC, Marco FARGETTA, Yen CHEN, Sandro FIORE, Z KURKCUOGLU, L LLORET, J MARTINS, Alessandra NUZZO, Paola NASSISI, J PINA, Eva SCIACCA, Daniele SPIGA, M TANGARO, Michal URBANIAK, Bas WEGH a T ZOK. INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures. Journal of Grid Computing. Springer Science+Business Media B.V., 2018, roč. 16, č. 3, s. 381-408. ISSN 1570-7873. Dostupné z: https://dx.doi.org/10.1007/s10723-018-9453-3.

PITNER, Tomáš, Jan MINISTR, Jan TOMÁŠEK, Martin LHOTÁK a Vyacheslav CHAPLYHA. Innovation of the Information System in the Field of Data Archiving. In Doucek Petr, Chroust Gerhard, Oškrdal Václav. 26th Interdisciplinary Information Management Talks (IDIMT) 2018 Strategic Modeling in Management, Economy and Society. Linz, Österreich/Austria: Johannes Kepler Universität Linz, 2018, s. 127-135. ISBN 978-3-99062-339-8.

CAPUTO, Francesco, Barbora BÜHNOVÁ a Leonard WALLETZKÝ. Investigating the role of smartness for sustainability: Insights from the Smart Grid domain. Sustainability Science. Tokyo: Springer, 2018, roč. 13, č. 5, s. 1299-1309. ISSN 1862-4065. Dostupné z: https://dx.doi.org/10.1007/s11625-018-0555-4.

PETROVIČ, Filip, Jiří FILIPOVIČ, David STŘELÁK a Jana PAZÚRIKOVÁ. Kernel Tuning Toolkit. 2018.

PIVOLUSKA, Matej, Marcus HUBER a Mehul MALIK. Layered quantum key distribution. Physical Review A. 2018, roč. 97, č. 3, s. "032312:1"-"032312:10", 10 s. ISSN 2469-9926. Dostupné z: https://dx.doi.org/10.1103/PhysRevA.97.032312.

PLESCH, Martin a Matej PIVOLUSKA. Loss of information in quantum guessing game. New Journal of Physics. IOP publishing, 2018, roč. 20, 07 02 2018, s. "023018:1"-"023018:10", 10 s. ISSN 1367-2630. Dostupné z: https://dx.doi.org/10.1088/1367-2630/aaa5f8.

BAVARESCO, Jessica, Natalia Herrera VALENCIA, Claude KLÖCKL, Matej PIVOLUSKA, Paul ERKER, Nicolai FRIIS, Mehul MALIK a Marcus HUBER. Measurements in two bases are sufficient for certifying high-dimensional entanglement. Nature Physics. Nature Publishing Group, 2018, roč. 14, č. 10, s. 1032-1040. ISSN 1745-2473. Dostupné z: https://dx.doi.org/10.1038/s41567-018-0203-z.

PELÁNEK, Radek, Tomáš EFFENBERGER, Matěj VANĚK, Vojtěch SASSMANN a Dominik GMITERKO. Measuring Item Similarity in Introductory Programming. Online. In Rose Luckin, Scott Klemmer, Kenneth R. Koedinger. Proceedings of the Fifth Annual ACM Conference on Learning at Scale. New York, NY, USA: ACM, 2018, s. "19:1"-"19:4", 4 s. ISBN 978-1-4503-5886-6. Dostupné z: https://dx.doi.org/10.1145/3231644.3231676.

POLČÁK, Radim, Leoš ŠEVČÍK, Michal KOŠČÍK, Jakub KLODWIG a Petr HOLUB. Metodika aplikace GDPR na výzkumná data v prostředí vysokých škol v ČR. 1. vydání. Brno: Neuveden, 2018, 156 s. Dostupné z: https://dx.doi.org/10.5281/zenodo.2532860.

SOJKA, Petr, Michal RŮŽIČKA a Vít NOVOTNÝ. MIaS: Math-Aware Retrieval in Digital Mathematical Libraries. Online. In Proceedings of the 27th ACM International Conference on Information and Knowledge Management (CIKM '18). Torino, Italy: Association for Computing Machinery, 2018, s. 1923-1926. ISBN 978-1-4503-6014-2. Dostupné z: https://dx.doi.org/10.1145/3269206.3269233.

OPPELT, Jan, Karolína TRACHTOVÁ a Marek MRÁZ. microRNA – are you real? In ENBIK2018 conference proceedings, Skalský dvůr. 2018.

OPPELT, Jan, Karolína TRACHTOVÁ a Marek MRÁZ. microRNA – are you real?! In ENBIK2018 - National Bioinformatics Conference. 2018. ISBN 978-80-7592-017-1.

BANGUI, Hind, Said RAKRAK, Said RAGHAY a Barbora BÜHNOVÁ. Moving to the Edge-Cloud-of-Things: Recent Advances and Future Research Directions. Electronics. Switzerland: MDPI, 2018, roč. 7, č. 11, s. 1-31. ISSN 2079-9292. Dostupné z: https://dx.doi.org/10.3390/electronics7110309.

BANGUI, Hind, Said RAKRAK, Said RAGHAY a Barbora BÜHNOVÁ. Moving towards Smart Cities: A Selection of Middleware for Fog-to-Cloud Services. Applied Sciences. Switzerland: MDPI, 2018, roč. 8, č. 11, s. 1-20. ISSN 2076-3417. Dostupné z: https://dx.doi.org/10.3390/app8112220.

WALLETZKÝ, Leonard a Mouzhi GE. MULTIDISCIPLINARY EDUCATION INFLUENCED BY COMPLEX SERVICES. Online. In 11th Annual International Conference of Education, Research and Innovation (ICERI 2018). Sevilla, Spain: IATED, 2018, s. 7802-7806. ISBN 978-84-09-05948-5.

STŘELÁK, David a Jiří FILIPOVIČ. Performance analysis and autotuning setup of the cuFFT library. Online. In ACM International Conference Proceeding Series. Limassol, Cyprus: ACM, 2018, s. nestránkováno, 6 s. ISBN 978-1-4503-6591-8. Dostupné z: https://dx.doi.org/10.1145/3295816.3295817.

HELFERT, Markus a Mouzhi GE. Perspectives of Big Data Quality in Smart Service Ecosystem. Journal of Information Technology Management. 2018, roč. 10, č. 4, s. 72-83. ISSN 2008-5893. Dostupné z: https://dx.doi.org/10.22059/JITM.2019.72763.

GE, Mouzhi a Vlastislav DOHNAL. Quality Management in Big Data. Informatics. Switzerland, 2018, roč. 5, č. 2. ISSN 2227-9709. Dostupné z: https://dx.doi.org/10.3390/informatics5020019.

KLUSÁČEK, Dalibor, Boris PARÁK, Václav CHLUMSKÝ a Lukáš HEJTMÁNEK. Real-life Experience with Private Cloud hosting Heterogeneous Scientific Workloads. Online. In 2018 IEEE/ACM INTERNATIONAL CONFERENCE ON UTILITY AND CLOUD COMPUTING COMPANION (UCC COMPANION). NEW YORK: IEEE, 2018, s. 115-120. ISBN 978-1-72810-359-4. Dostupné z: https://dx.doi.org/10.1109/UCC-Companion.2018.00044.

CAPUTO, Francesco, Barbora BÜHNOVÁ a Leonard WALLETZKÝ. Reflecting upon the role of smart grids in linking smartness and sustainability. Online. In Sergio Barile, Raul Espejo, Igor Perko, Marialuisa Saviano. Cybernetics and Systems: Social and Business Decisions. Neuveden: Routledge, 2018, s. 205-210. ISBN 978-0-367-66324-7. Dostupné z: https://dx.doi.org/10.4324/9780429486982-43.

CHREN, Stanislav, Bruno ROSSI, Barbora BÜHNOVÁ a Tomáš PITNER. Reliability Data for Smart Grids: Where the Real Data can be Found. Online. In Ruzicka, J. 2018 Smart City Symposium Prague (SCSP). New York: IEEE, 2018, s. 1-6. ISBN 978-1-5386-5017-2. Dostupné z: https://dx.doi.org/10.1109/SCSP.2018.8402648.

KALENDA, Martin, Petr HYNA a Bruno ROSSI. Scaling Agile in Large Organizations: Practices, Challenges, and Success Factors. Journal of Software: Evolution and Process. 2018, roč. 30, č. 10, s. 1-24. ISSN 2047-7473. Dostupné z: https://dx.doi.org/10.1002/smr.1954.

KUČERA, Adam a Tomáš PITNER. Semantic BMS: Allowing usage of building automation data in facility benchmarking. Advanced Engineering Informatics. 2018, roč. 35, January, s. 69-84. ISSN 1474-0346. Dostupné z: https://dx.doi.org/10.1016/j.aei.2018.01.002.

SCHVARCBACHER, Martin, Katarína HRABOVSKÁ, Bruno ROSSI a Tomáš PITNER. Smart Grid Testing Management Platform (SGTMP). Applied Sciences-Basel. BASEL, SWITZERLAND: MDPI AG, 2018, roč. 8, č. 11, s. 1-23. ISSN 2076-3417. Dostupné z: https://dx.doi.org/10.3390/app8112278.

PITNER, Tomáš, Mirjana IVANOVIČ, Miloš SAVIĆ a Stelios XINOGALOS. Students’ perspective on the first programming language: C-like or Pascal-like languages? Journal Education and Information Technologies. New York, USA: Springer US, 2018, roč. 23, č. 1, s. 287-302. ISSN 1360-2357. Dostupné z: https://dx.doi.org/10.1007/s10639-017-9601-6.

ALOCCI, Davide, Pavla SUCHÁNKOVÁ, Renaud COSTA, Nicolas HORY, Julien MARIETHOZ, Radka SVOBODOVÁ VAŘEKOVÁ, Philip TOUKACH a Frederique LISACEK. SugarSketcher: Quick and Intuitive Online Glycan Drawing. Molecules. Mayer und Muller, 2018, roč. 23, č. 12, s. 3206-3216. ISSN 1420-3049. Dostupné z: https://dx.doi.org/10.3390/molecules23123206.

PAPOUŠEK, Dalibor, Vojtěch KAŠE, Zdeněk POSPÍŠIL, Adam MERTEL, Jan FOUSEK a Eva VÝTVAROVÁ. Šíření křesťanství v antickém Středomoří. In Kognice a umělý život, Brno (30.5. - 1.6. 2018). 2018.

CHALUPA, Aleš, Tomáš GLOMB, Adam MERTEL, Eva VÝTVAROVÁ, Zdeněk STACHOŇ, Zdeněk POSPÍŠIL a Jan FOUSEK. Šíření „orientálních kultů“ po cestách starověkého Středomoří : Případové studie egyptských kultů a Mithraismu. In Kognice a umělý život 2018, Brno, 30.5.-1.6.2018. 2018.

POPESCU, Mirona, Mouzhi GE a Markus HELFERT. The Social Media Perception and Reality -Possible Data Quality Deficiencies between Social Media and ERP. In Proceedings of the 20th International Conference on Enterprise Information Systems. Madeira, Portugal: SCITEPRESS, 2018, s. 198-204. ISBN 978-989-758-298-1. Dostupné z: https://dx.doi.org/10.5220/0006788801980204.

ANTOL, Matej a Vlastislav DOHNAL. Towards Artificial Priority Queues for Similarity Query Execution. Online. In 2018 IEEE 34th International Conference on Data Engineering Workshops (ICDEW). Paris, France: IEEE, 2018, s. 78-83. ISBN 978-1-5386-6306-6. Dostupné z: https://dx.doi.org/10.1109/ICDEW.2018.00020.

KADLEC, Miroslav, Jan ROSECKÝ, Filip PROCHÁZKA, Barbora BÜHNOVÁ a Tomáš PITNER. Towards Discovering the Limits of Smart Grid Communication Infrastructure. In Gandolfo Dominici. Governing Business Systems. Cham, Switzerland: Springer, 2018, s. 87-99. ISBN 978-3-319-66034-9. Dostupné z: https://dx.doi.org/10.1007/978-3-319-66036-3_5.

ŠTĚPÁNEK, Petr a Mouzhi GE. Validation and Extension of the Smart City Ontology. Online. In Proceedings of the 20th International Conference on Enterprise Information Systems - Volume 2: ICEIS. Madeira, Portugal: SciTePress, 2018, s. 406-413. ISBN 978-989-758-298-1. Dostupné z: https://dx.doi.org/10.5220/0006818304060413.

WALLETZKÝ, Leonard, Barbora BÜHNOVÁ a Luca CARRUBBO. Value-Driven Conceptualization of Services in the Smart City: A Layered Approach. In Social Dynamics in a Systems Perspective. Cham, Germany: Springer, 2018, s. 85-98. ISBN 978-3-319-61966-8. Dostupné z: https://dx.doi.org/10.1007/978-3-319-61967-5_5.

PROYNOVA, Rumyana, Diogo ALEXANDRE, Martin LABLANS, David VAN ENCKEVORT, Sebastian MATE, Niina EKLUND, Kaisa SILANDER, Michael HUMMEL, Petr HOLUB a Frank ÜCKERT. A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples. Stud Health Technol Inform. Netherlands: IOS Press, 2017, roč. 243, s. 75-79, 6 s. ISSN 0926-9630. Dostupné z: https://dx.doi.org/10.3233/978-1-61499-808-2-75.

GE, Mouzhi a Fabio PERSIA. A Survey of Multimedia Recommender Systems: Challenges and Opportunities. International Journal of Semantic Computing. World Scientific Publishing, 2017, roč. 11, č. 3, s. 411-428. ISSN 1793-351X. Dostupné z: https://dx.doi.org/10.1142/S1793351X17500039.

HELFERT, Markus a Mouzhi GE. A Tool for Demonstrating the Data Quality Bullwhip Effect. In Proceedings of the Innovative Teaching Approaches in Business Informatics. Wroclaw, Poland: IEEE, 2017.

GE, Mouzhi a Theodoros CHONDROGIANNIS. Assessing the Quality of Spatio-textual Datasets in the Absence of Ground Truth. In Proceedings of the 21st European Conference on Advances in Databases and Information Systems. Cham: Springer, 2017, s. 12-20. ISBN 978-3-319-67161-1. Dostupné z: https://dx.doi.org/10.1007/978-3-319-67162-8_2.

FILIPOVIČ, Jiří, Filip PETROVIČ a Siegfried BENKNER. Autotuning of OpenCL Kernels with Global Optimizations. Online. In 1st Workshop on Autotuning and Adaptivity Approaches for Energy Efficient HPC Systems (ANDARE'2017). Portland (USA): ACM, 2017, s. nestránkováno, 6 s. ISBN 978-1-4503-5363-2. Dostupné z: https://dx.doi.org/10.1145/3152821.3152877.

PANG, Chao, Fleur KELPIN, David VAN ENCKEVORT, Niina EKLUND, Kaisa SILANDER, Dennis HENDRIKSEN, Mark DE HAAN, Jonathan JETTEN, Tommy DE BOER, Bart CHARBON, Petr HOLUB, Hans HILLEGE a Morris A. SWERTZ. BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration. Bioinformatics. Oxford: Oxford University Press, 2017, roč. 33, č. 22, s. 3627-3634. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btx478.

RAČEK, Tomáš, Dan POLANSKÝ, Radka SVOBODOVÁ VAŘEKOVÁ a Jaroslav KOČA. bio.tools Sum. In ELIXIR CZ Annual Conference 2017. 2017. ISBN 978-80-86241-57-9.

FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA a Jiří DAMBORSKÝ. CaverDock 1.0. 2017.

KNÍŽEK, Jiří, Ladislav BERÁNEK, Pavel BOUCHAL, Bořivoj VOJTĚŠEK, Rudolf NENUTIL, Martin KUBA, Lubomír PAVLIŠKA a Václav PROCHÁZKA. Computation of Kovanic's Expectedness Distributions with the Help of Parallel Computing - Basic Version (with Special References of Health and Environment). INTERNATIONAL JOURNAL OF ECOLOGICAL ECONOMICS & STATISTICS. UTTARAKHAND: CENTRE ENVIRONMENT SOCIAL & ECONOMIC RESEARCH PUBL-CESER, 2017, roč. 38, č. 1, s. 96-119. ISSN 0973-1385.

HOFER-PICOUT, Philipp, Horst PICHLER, Johann EDER, Sabrina B. NEURURER, Heimo MÜLLER, Robert REIHS, Petr HOLUB, Thomas INSAM a Georg GOEBEL. Conception and Implementation of an Austrian Biobank Directory Integration Framework. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2017, roč. 15, č. 4, s. 332-340. ISSN 1947-5535. Dostupné z: https://dx.doi.org/10.1089/bio.2016.0113.

CHALUPA, Aleš, Eva VÝTVAROVÁ, Jan FOUSEK a Adam MERTEL. Connection Between Mithraism and Roman Army Garrisons. In Historical Network Research Conference, 17.-18.10.2017, Turku, Finland. 2017.

SINGHA ROY, Nivir Kanti a Bruno ROSSI. Cost-Sensitive Strategies for Data Imbalance in Bug Severity Classification: Experimental Results. Online. In 43rd Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2017. Not specified: IEEE, 2017, s. 426-429. ISBN 978-1-5386-2140-0. Dostupné z: https://dx.doi.org/10.1109/SEAA.2017.71.

HELFERT, Markus a Mouzhi GE. Developing an Enterprise Architecture Framework and Services for Smart Cities. In Proceedings of the 25th Interdisciplinary Information Management Talks. Poděbrady, Czech Republic: Trauner Verlag, 2017, s. 383-390. ISBN 978-3-99062-119-6.

KRÁL, Jaroslav, Tomáš PITNER a Michal ŽEMLIČKA. Document-Oriented Middleware: The Way to High-Quality Software. In International Conference on Computational Science and Its Applications. 1. vyd. Cham: Springer, Cham, 2017, s. 607-619. ISBN 978-3-319-62403-7. Dostupné z: https://dx.doi.org/10.1007/978-3-319-62404-4_45.

HŘEBÍČEK, Jiří, Ralf DENZER, Gerald SCHIMAK a Tomáš PITNER. Environmental Software Systems. Computer Science for Environmental Protection12th IFIP WG 5.11 International Symposium. In IFIPAICT, volume 507. 1. vyd. Cham: Springer, Cham, 2017, 486 s. ISBN 978-3-319-89934-3. Dostupné z: https://dx.doi.org/10.1007/978-3-319-89935-0.

VÝTVAROVÁ, Eva a Jan FOUSEK. Evaluation of community detection algorithms applied to time-series connectivity networks with dynamical structure. In CompleNet'17, Dubrovnik, Croatia. 2017.

RŮŽIČKA, Michal, Vít NOVOTNÝ, Petr SOJKA, Jan POMIKÁLEK a Radim ŘEHŮŘEK. Flexible Similarity Search of Semantic Vectors Using Fulltext Search Engines. Online. In CEUR Workshop Proceedings, Vol. 1923. Vienna, Austria: Neuveden, 2017, s. 1-12. ISSN 1613-0073.

JIMÉNEZ, Rafael C, Mateusz KUZAK, Monther ALHAMDOOSH, Michelle BARKER, Bérénice BATUT, Mikael BORG, Salvador CAPELLA-GUTIERREZ, Neil Chue HONG, Martin COOK, Manuel CORPAS, Madison FLANNERY, Leyla GARCIA, Josep Ll GELPÍ, Simon GLADMAN, Carole GOBLE, Montserrat González FERREIRO, Alejandra GONZALEZ-BELTRAN, Philippa C GRIFFIN, Björn GRÜNING, Jonas HAGBERG, Petr HOLUB, Rob HOOFT, Jon ISON, Daniel S KATZ, Brane LESKOŠEK, Federico López GÓMEZ, Luis J OLIVEIRA, David MELLOR, Rowland MOSBERGEN, Nicola MULDER, Yasset PEREZ-RIVEROL, Robert PERGL, Horst PICHLER, Bernard POPE, Ferran SANZ, Maria V SCHNEIDER, Victoria STODDEN, Radosław SUCHECKI, Radka SVOBODOVÁ VAŘEKOVÁ, Harry-Anton TALVIK, Ilian TODOROV, Andrew TRELOAR, Sonika TYAGI, Maarten van GOMPEL, Daniel VAUGHAN, Allegra VIA, Xiaochuan WANG, Nathan S WATSON-HAIGH a Crouch STEVE. Four simple recommendations to encourage best practices in research software. F1000Research. 2017, roč. 6, JUN, s. 876-888. ISSN 2046-1402. Dostupné z: https://dx.doi.org/10.12688/f1000research.11407.1.

YANG, Qishan, Mouzhi GE a Markus HELFERT. Guildlines of Data Quality Issues for Data Integration in the Context of the TPC-DI Benchmark. In Proceedings of the 19th International Conference on Enterprise Information Systems. Porto, Portugal: SciTePress, 2017, s. 135-144. ISBN 978-989-758-247-9. Dostupné z: https://dx.doi.org/10.5220/0006334301350144.

POPOVICI, Vlad, Aleš KŘENEK a Eva BUDINSKÁ. Identification of "BRAF-Positive" Cases Based on Whole-Slide Image Analysis. Biomed Research International. New York: HINDAWI LTD, 2017, Neuveden, April, s. nestránkováno, 7 s. ISSN 2314-6133. Dostupné z: https://dx.doi.org/10.1155/2017/3926498.

PITNER, Tomáš, Jan MINISTR a Andreja PUCIHAR. Innovation and diversity. In Doucek Petr, Chroust Gerhard, Oškrdal Václav. 25th Interdisciplinary Information Management Talks (IDIMT) 2017 Digitalization in Management, Society and Economy. Linz, Österreich/Austria: Johannes Kepler Universität Linz, 2017, s. 63-69. ISBN 978-3-99062-119-6.

PITNER, Tomáš a Jan MINISTR. Innovation Of The Information Management In Compliance Management Area. In Doucek Petr, Chroust Gerhard, Oškrdal Václav. 25th Interdisciplinary Information Management Talks (IDIMT) 2017 Digitalization in Management, Society and Economy. Linz, Österreich/Austria: Johannes Kepler Universität Linz, 2017, s. 71-78. ISBN 978-3-99062-119-6.

VÝTVAROVÁ, Eva, Jan FOUSEK, Michal MIKL, Irena REKTOROVÁ a Eva HLADKÁ. Investigating Community Detection Algorithms and their Capacity as Markers of Brain Diseases. Online. In International Symposium on Grids and Clouds (ISGC) 2017. Academia Sinica, Taipei, Taiwan: Proceedings of Science. Taipei; Taiwan: Sissa Medialab Srl, 2017, s. 1-14. ISSN 1824-8039. Dostupné z: https://dx.doi.org/10.22323/1.293.0018.

VÝTVAROVÁ, Eva, Jan FOUSEK, Michal MIKL a Irena REKTOROVÁ. Investigating Modularity and Its Capacity As a Marker of Neurodegenerative Diseases. In 64. Společný sjezd české a slovenské společnosti pro klinickou neurofyziologii, České Budějovice. 2017.

MASSIMO, David, Mehdi ELAHI, Francesco RICCI a Mouzhi GE. Item Contents Good, User Tags Better: Empirical Evaluation of a Food Recommender System. Online. In Proceedings of the 25th Conference on User Modeling, Adaptation and Personalization. Bratislava, Slovakia: ACM, 2017, s. 373-374. ISBN 978-1-4503-4635-1. Dostupné z: https://dx.doi.org/10.1145/3079628.3079640.

ŠTĚPÁNEK, Petr, Mouzhi GE a Leonard WALLETZKÝ. IT-enabled Digital Service Design Principles - Lessons Learned from Digital Cities. Online. In Themistocleous, Marinos, Morabito, Vincenzo. Proceedings of the 14th European Mediterranean & Middle Eastern Conference on Information Systems. Coimbra, Portugal: Springer, 2017, s. 186-196. ISBN 978-3-319-65929-9. Dostupné z: https://dx.doi.org/10.1007/978-3-319-65930-5_15.

VÝTVAROVÁ, Eva, Radek MAREČEK, Jan FOUSEK, Ondřej STRÝČEK a Ivan REKTOR. Large-scale cortico-subcortical functional networks in focal epilepsies: The role of the basal ganglia. NeuroImage-Clinical. Oxford: Elsevier BV, 2017, roč. 2017, č. 14, s. 28-36. ISSN 2213-1582. Dostupné z: https://dx.doi.org/10.1016/j.nicl.2016.12.014.

RŮŽIČKA, Michal. Math Information Retrieval for Digital Libraries. Brno: Masaryk University, Faculty of Informatics, 2017, 144 s. Doctoral Thesis.

KREJČÍŘ, Vlastimil. Mathematics Index and Search in DSpace. In OAI10 DSpace user group meeting (Pre-conference of OAI 10 - The CERN - UNIGE Workshop on Innovations in Scholarly Communication). 2017.

CAPUTO, Francesco, Mouzhi GE a Leonard WALLETZKÝ. Modelling the Service Value Chain for Smart City. In Proceedings of the 25th Interdisciplinary Information Management Talks. Poděbrady, Czech Republic: Trauner Verlag, 2017, s. 375-382. ISBN 978-3-99062-119-6.

BANGUI, Hind, Mouzhi GE, Barbora BÜHNOVÁ, Said RAKRAK, Said RAGHAY a Tomáš PITNER. Multi-Criteria Decision Analysis Methods in the Mobile Cloud Offloading Paradigm. Journal of Sensor and Actuator Networks. MDPI, 2017, roč. 6, č. 4, s. 1-19. ISSN 2224-2708. Dostupné z: https://dx.doi.org/10.3390/jsan6040025.

BARTOŠEK, Miroslav, Michal RŮŽIČKA a Václav STUPKA. Nařízení GDPR a jeho implementace na vysokých školách v ČR – jak na to. In EUNIS-CZ. Dopad zavedení novely VŠ zákona do IS vysokých škol. 1. vyd. Plzeň: Západočeská univerzita v Plzni, 2017, s. 5-14. ISBN 978-80-261-0713-2.

KADLEC, Miroslav, Barbora BÜHNOVÁ a Tomáš PITNER. Planning and Scheduling for Optimizing Communication in Smart Grids. Online. In 12th International Symposium on Environmental Software Systems, ISESS 2017;. Zadar: Springer New York LLC, 2017, s. 446-456. ISBN 978-3-319-89934-3. Dostupné z: https://dx.doi.org/10.1007/978-3-319-89935-0_37.

ANTOL, Matej a Vlastislav DOHNAL. Popularity-Based Ranking for Fast Approximate kNN Search. Informatica. Lithuanian Academy of Sciences, 2017, roč. 28, č. 1, s. 1-21. ISSN 0868-4952. Dostupné z: https://dx.doi.org/10.15388/Informatica.2017.118.

DOSTÁL, Otto, Otto DOSTÁL a Michal JAVORNÍK. Právní limity nakládání s údaji o zdravotním stavu. In XIII. mezinárodní kongres informačních technologií ve zdravotnictví. 2017.

GE, Mouzhi, Markus HELFERT a Tony O'BRIEN. Predicting Data Quality Success - The Bullwhip Effect in Data Quality. In Björn Johansson. Proceedings of the 16th International Conference on Perspectives in Business Informatics Research. Copenhagen, Denmark: Springer, 2017, s. 157-165. ISBN 978-3-319-64929-0. Dostupné z: https://dx.doi.org/10.1007/978-3-319-64930-6_12.

MINISTR, Jan a Tomáš PITNER. Process Support of Information Security according to COBIT® 5. In NEMEC, R., CHYTILOVA, L. Proceedings of the 12 th International Conference on Strategic Management and its Support by Information Systems 2017. Ostrava, Czech Republic: VŠB – Technical University of Ostrava, Faculty of Economics, 2017, s. 418-424. ISBN 978-80-248-4046-8.

KOBUSIŃSKA, Anna, Adam WOLSKI, Jerzy BRZEZIŃSKI a Mouzhi GE. P2P Web Browser Middleware to Enhance Service Oriented Computing - Analysis and Evaluation. In 10th IEEE International Conference on Service-Oriented Computing and Applications (SOCA 2017). New York: IEEE, 2017, s. 58-65. ISBN 978-1-5386-1326-9. Dostupné z: https://dx.doi.org/10.1109/SOCA.2017.16.

PAZÚRIKOVÁ, Jana, Aleš KŘENEK, Vojtěch SPIWOK a Mária ŠIMKOVÁ. Reducing the number of mean-square deviation calculations with floating close structure in metadynamics. Journal of Chemical Physics. Melville: American Institute of Physics, 2017, roč. 146, č. 11, s. "115101:1"-"115101:8", 8 s. ISSN 0021-9606. Dostupné z: https://dx.doi.org/10.1063/1.4978296.

FOUSEK, Jan, Vojtěch KAŠE, Eva VÝTVAROVÁ a Adam MERTEL. Relating the Spread of Early Christianity to the Transportation Network of Ancient Mediterranean. In Historical Network Research Conference, Turku, Finland. 2017.

GE, Mouzhi a Fabio PERSIA. Research Challenges in Multimedia Recommender Systems. Online. In Proceedings of the IEEE International Conference on Semantic Computing. San Diego, USA: IEEE, 2017, s. 344-347. ISBN 978-1-5090-4896-0. Dostupné z: https://dx.doi.org/10.1109/ICSC.2017.31.

ROČEK, Aleš, Michal JAVORNÍK, Karel SLAVÍČEK a Otto DOSTÁL. Reversible Watermarking in Medical Imaging with Zero Distortion in ROI. Online. In Proceedings of 24th IEEE International Conference on Electronics, Circuits and Systems (ICECS 2017). New York: IEEE, 2017, s. 356-359. ISBN 978-1-5386-1911-7. Dostupné z: https://dx.doi.org/10.1109/ICECS.2017.8292071.

KUČERA, Adam a Tomáš PITNER. Semantic BMS: Ontology for Analysis of Building Operation Efficiency. In Hřebíček J., Denzer R., Schimak G., Pitner T. Environmental Software Systems. Computer Science for Environmental Protection. Cham: Springer, 2017, s. 349-359. ISBN 978-3-319-89934-3. Dostupné z: https://dx.doi.org/10.1007/978-3-319-89935-0_29.

RYGL, Jan, Jan POMIKÁLEK, Radim ŘEHŮŘEK, Michal RŮŽIČKA, Vít NOVOTNÝ a Petr SOJKA. Semantic Vector Encoding and Similarity Search Using Fulltext Search Engines. Online. In Proceedings of the 2nd Workshop on Representation Learning for NLP, RepL4NLP 2017 c/o ACL 2017. Vancouver, Canada: Association for Computational Linguistics, ACL, 2017, s. 81-90. ISBN 978-1-945626-62-3. Dostupné z: https://dx.doi.org/10.18653/v1/W17-2611.

KLUSÁČEK, Dalibor, Boris PARÁK a Lukáš HEJTMÁNEK. Scheduling Challenges in a Shared Private Cloud Infrastructure. CGW Workshop'17 Proceedings. 2017, roč. 2017, č. 1, s. 23-24.

SCHVARCBACHER, Martin a Bruno ROSSI. Smart Grids Co-Simulations with Low-Cost Hardware. Online. In 43rd Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2017. Not specified: IEEE, 2017, s. 252-255. ISBN 978-1-5386-2140-0. Dostupné z: https://dx.doi.org/10.1109/SEAA.2017.43.

BANGUI, Hind, Barbora BÜHNOVÁ, Said RAKRAK a Said RAGHAY. Smart mobile technologies for the city of the future. Online. In Smart City Symposium Prague (SCSP), 2017. Neuveden: IEEE, 2017, s. 1-6. ISBN 978-1-5386-3825-5. Dostupné z: https://dx.doi.org/10.1109/SCSP.2017.7973851.

IVANOVIČ, Mirjana, Stelios XINOGALOS, Tomáš PITNER a Miloš SAVIĆ. Technology enhanced learning in programming courses – international perspective. Education and Information Technologies. New York, NY, USA: Springer US, 2017, roč. 22, č. 6, s. 2981-3003. ISSN 1360-2357. Dostupné z: https://dx.doi.org/10.1007/s10639-016-9565-y.

VÝTVAROVÁ, Eva, Jan FOUSEK, Marek BARTOŇ, Radek MAREČEK, Martin GAJDOŠ, Martin LAMOŠ, Marie NOVÁKOVÁ, Tomáš SLAVÍČEK, Igor PETERLÍK a Michal MIKL. The Impact of Diverse Preprocessing Pipelines on Brain Functional Connectivity. Online. In 25th European Signal Processing Conference (EUSIPCO), Kos, Greece. Kos, Greece: IEEE, 2017, s. 2644-2648. ISBN 978-0-9928626-7-1. Dostupné z: https://dx.doi.org/10.23919/EUSIPCO.2017.8081690.

PITNER, Tomáš, Jan MINISTR, Daniel TOVARŇÁK, Filip KŠENZULIAK a Adam KUČERA. Towards a Common Logging and Monitoring Framework for Critical Infrastructures. In Radek Němec, Lucie Chytilová. Strategic Management and its Support by Information Systems (SMSIS). Ostrava: VŠB - Technical University of Ostrava, 2017, s. 488-495. ISBN 978-80-248-4046-8.

KADLEC, Miroslav, Barbora BÜHNOVÁ, Jan TOMŠÍK, Jan HERMAN a Kateřina DRUŽBÍKOVÁ. Weather forecast based scheduling for demand response optimization in smart grids. Online. In Smart City Symposium Prague (SCSP), 2017. Prague: IEEE, 2017, s. 1-6. ISBN 978-1-5386-3825-5. Dostupné z: https://dx.doi.org/10.1109/SCSP.2017.7973867.

ROČEK, Aleš, Karel SLAVÍČEK, Otto DOSTÁL a Michal JAVORNÍK. A new approach to fully-reversible watermarking in medical imaging with breakthrough visibility parameters. Biomedical Signal Processing and Control. Elsevier, 2016, roč. 29, č. 7, s. 44-52. ISSN 1746-8094. Dostupné z: https://dx.doi.org/10.1016/j.bspc.2016.05.005.

FILIPOVIČ, Jiří, Jana PAZÚRIKOVÁ, Aleš KŘENEK a Vojtěch SPIWOK. Accelerated RMSD Calculation for Molecular Metadynamics. In José Évora-Gómez and José Juan Hernandéz-Cabrera. Proceedings of the 2016 European Simulation and Modelling Conference. Ghent, Belgie: EUROSIS - ETI, 2016, s. 278-280. ISBN 978-90-77381-95-3.

HOLUB, Petr, Morris A. SWERTZ, Robert REIHS, David VAN ENCKEVORT, Heimo MÜLLER a Jan-Eric LITTON. BBMRI-ERIC Directory: 515 Biobanks with Over 60 Million Biological Samples. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2016, roč. 14, č. 6, s. 559-562. ISSN 1947-5535. Dostupné z: https://dx.doi.org/10.1089/bio.2016.0088.

MAYRHOFER, Michaela Th., Petr HOLUB, Andrea WUTTE a Jan-Eric LITTON. BBMRI-ERIC: the novel gateway to biobanks. Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz. 2016, roč. 2016, s. 1-6. ISSN 1437-1588. Dostupné z: https://dx.doi.org/10.1007/s00103-015-2301-8.

RUSŇÁK, Vít, Pavel TROUBIL, Eva HLADKÁ, Desana DAXNEROVÁ, Pavel KAJABA, Matej MINÁRIK, Svatoslav ONDRA a Tomáš SKLENÁK. CoUnSiL: A Videoconferencing Environment for Interpretation of Sign Language. Online. In Okyay Kaynak. 2016 15th International Conference on Information Technology Based Higher Education and Training (ITHET). Istanbul, Turkey: IEEE, 2016, s. 1-8. ISBN 978-1-5090-0778-3. Dostupné z: https://dx.doi.org/10.1109/ITHET.2016.7760711.

RUSŇÁK, Vít, Pavel TROUBIL, Svatoslav ONDRA, Tomáš SKLENÁK, Desana DAXNEROVÁ, Eva HLADKÁ, Pavel KAJABA, Matej MINÁRIK, Peter NOVÁK, Christoph DAMM a Jaromír KALA. CoUnSiL: Collaborative Universe for Remote Interpreting of Sign Language in Higher Education. Online. In Klaus Miesenberger. Computers Helping People with Special Needs: 15th International Conference, ICCHP 2016, Linz, Austria, July 13-15, 2016, Proceedings, Part II. ICCHP 2016. Neuveden: Springer International Publishing, 2016, s. 392-399. ISBN 978-3-319-41267-2. Dostupné z: https://dx.doi.org/10.1007/978-3-319-41267-2_55.

RUSŇÁK, Vít. CoUnSiL: Videoconferencing Environment for Remote Interpreting of Sign Language in Higher Education. In Sign Languages in Tertiary Education and Scholarly Publications in Sign Languages. 2016.

KŘENEK, Aleš, Tomáš RAČEK a Jana PAZÚRIKOVÁ. Direct SAXS Curve Fitting with an Ensable of Conformations. In Molecular Machines 2016. 2016.

PAZÚRIKOVÁ, Jana, Aleš KŘENEK a Luděk MATYSKA. Guided Optimization Method for Fast and Accurate Atomic Charges Computation. In José Évora-Gómez and José Juan Hernandéz-Cabrera. Proceedings of the 2016 European Simulation and Modelling Conference. Ghent, Belgicko: EUROSIS - ETI, 2016, s. 267-274. ISBN 978-90-77381-95-3.

KABÁT, Milan, Vojtěch DAVID, Petr HOLUB a Martin PULEC. High-performance forward error correction: Enabling multi-gigabit flows and beyond on commodity GPU and CPU hardware in presence of packet loss. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2016, roč. 54, č. 1, s. 326 - 335. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2015.04.007.

KOZEL, Jiří, Andrea KÝNOVÁ, Petr KOVÁCS, Pavel BOHUMEL a Jan SIKORA. Mapová knihovna munimap. 2016.

RŮŽIČKA, Michal, Petr SOJKA a Martin LÍŠKA. Math Indexer and Searcher under the Hood: Fine-Tuning Query Expansion and Unification Strategies. Online. In Noriko Kando and Kazuaki Kishida and Makoto P. Kato and Shuhei Yamamoto. Proceedings of the 12th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2016, s. 331-337. ISBN 978-4-86049-071-3.

SOJKA, Petr a Michal RŮŽIČKA. Math-Aware Search Interfaces for Digital Mathematical Libraries (DML). 2016.

KREJČÍŘ, Vlastimil. Memento – cestování časem na webu. Online. In INFORUM 2016: 22. ročník konference o profesionálních informačních zdrojích. Praha: Albertina icome Praha, 2016, s. nestránkováno, 11 s. ISSN 1801-2213.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Aleš KŘENEK, Jana PAZÚRIKOVÁ, Stanislav GEIDL a Jaroslav KOČA. NEEMP – nástroj pro parametrizaci EEM. In ENBIK2016. 2016. ISBN 978-80-7080-960-0.

RAČEK, Tomáš, Jana PAZÚRIKOVÁ, Radka SVOBODOVÁ VAŘEKOVÁ, Stanislav GEIDL, Aleš KŘENEK, Francesco Luca FALGINELLA, Vladimír HORSKÝ, Václav HEJRET a Jaroslav KOČA. NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges. Journal of Cheminformatics. London: BIOMED CENTRAL LTD, 2016, roč. 8, October, s. nestránkováno, 14 s. ISSN 1758-2946. Dostupné z: https://dx.doi.org/10.1186/s13321-016-0171-1.

SEDLÁŘ, Milan, Bin JI, Tomáš KRÁTKÝ, Tomáš REBOK a Rostislav HUZLÍK. Numerical and experimental investigation of three-dimensional cavitating flow around the straight NACA2412 hydrofoil. Ocean Engineering. Elsevier Ltd., 2016, roč. 123, č. 123, s. 357-382. ISSN 0029-8018. Dostupné z: https://dx.doi.org/10.1016/j.oceaneng.2016.07.030.

ANTOL, Matej a Vlastislav DOHNAL. Optimizing Query Performance with Inverted Cache in Metric Spaces. In Lecture Notes in Computer Science. Advances in Databases and Information Systems, 20th East European Conference, ADBIS 2016. Cham: Springer, 2016, s. 60-73. ISBN 978-3-319-44038-5. Dostupné z: https://dx.doi.org/10.1007/978-3-319-44039-2_5.

PAZÚRIKOVÁ, Jana, Tomáš RAČEK, Stanislav GEIDL, Radka SVOBODOVÁ VAŘEKOVÁ a Aleš KŘENEK. Parametrizace ekvalizace elektronegativity metodou diferenciální evoluce. In ENBIK 2016. 2016.

PLANTEFÈVE, Rosalie, Igor PETERLÍK, Nazim HAOUCHINE a Stéphane COTIN. Patient-Specific Biomechanical Modeling for Guidance During Minimally-Invasive Hepatic Surgery. ANNALS OF BIOMEDICAL ENGINEERING. NEW YORK: SPRINGER, 2016, roč. 44, č. 1, s. 139-153. ISSN 0090-6964. Dostupné z: https://dx.doi.org/10.1007/s10439-015-1419-z.

HAMZÉ, Noura, Igor PETERLÍK, Stéphane COTIN a Caroline ESSERT. Preoperative trajectory planning for percutaneous procedures in deformable environments. Computerized Medical Imaging and Graphics. Elsevier, 2016, roč. 47, č. 1, s. 16-28. ISSN 0895-6111. Dostupné z: https://dx.doi.org/10.1016/j.compmedimag.2015.10.002.

MELICHAR, Marek, Jan HUTAŘ, Michal RŮŽIČKA, Zdeněk HRUŠKA, Zdeněk VAŠEK, Miroslav BARTOŠEK a Martin LHOTÁK. Projekt ArcLib – budování systému pro dlouhodobou archivaci digitálních dat v českých knihovnách. IT lib. Bratislava: Centrum vedecko-technických informácií SR, 2016, roč. 20, č. 2, s. 13-17. ISSN 1335-793X.

ROČEK, Aleš, Karel SLAVÍČEK a Michal JAVORNÍK. RONI Size and another Attributes of Representative Sample of Medical Images in Common Hospital Operation, Related to Securing by Watermarking Methods. In Prof. Osama Mohamed Mohamed Ahamed. International Conference on Image Processing, Production and Computer Science (ICIPCS'16). London: URENG, 2016, s. 44-51. ISBN 978-93-84422-62-2.

RYGL, Jan, Petr SOJKA, Michal RŮŽIČKA a Radim ŘEHŮŘEK. ScaleText: The Design of a Scalable, Adaptable and User-Friendly Document System for Similarity Searches : Digging for Nuggets of Wisdom in Text. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Tenth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2016. Brno: Tribun EU, 2016, s. 79-87. ISBN 978-80-263-1095-2.

RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. Toward Natural Multi-User Interaction in Advanced Collaborative Display Environments. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2016, roč. 54, January 2016, s. 313-325. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2015.03.019.

MERINO-MARTINEZ, Roxana, Loreana NORLIN, David VAN ENCKEVORT, Gabriele ANTON, Simone SCHUFFENHAUER, Kaisa SILANDER, Linda MOOK, Petr HOLUB, Raffael BILD, Morris SWERTZ a Jan-Eric LITTON. Towards Global Biobank Integration by Implementation of the Minimum Information About Biobank data Sharing (MIABIS 2.0 Core). Biopreservation and Biobanking. 2016. ISSN 1947-5535. Dostupné z: https://dx.doi.org/10.1089/bio.2015.0070.

BARTOŠEK, Miroslav. Uchování digitálního dědictví a systém Archivematica. ITlib. Infotmačné technológie a knižnice. Bratislava: Centrum vedecko-technických informácií SR, 2016, roč. 2016, č. 2, s. 32-35. ISSN 1335-793X.

BARTOŠEK, Miroslav. Vývoj postoje k vědeckým informacím a modelu otevřeného přístupu. In Petra Dědičová, Pavla Rygelová, Jiří Marek, Jan Skůpa. Otevřený přístup k vědeckým informacím : současný stav v České republice a ve světě. První vydání. Brno: Nakladatelství VUTIUM, 2016, s. 14-22. ISBN 978-80-214-5282-4.

FILIPOVIČ, Jiří, Jan PLHÁK a David STŘELÁK. Acceleration of dRMSD Calculation and Efficient Usage of GPU Caches. In Waleed Smari. Proceedings of IEEE International Conference on High Performance Computing & Simulation. neuveden: IEEE, 2015, s. 47-54. ISBN 978-1-4673-7812-3. Dostupné z: https://dx.doi.org/10.1109/HPCSim.2015.7237020.

KŘENEK, Aleš, Karel KUBÍČEK, Richard ŠTEFL a Jiří FILIPOVIČ. Accurate Fitting SAXS Curves with NMR Structure Ensembles. Online. In Simon Lin, Vicky Huang. Proceedings of International Symposium on Grids and Clouds 2015. Pissa: Proceedings of Science, 2015, s. nestránkováno, 9 s. ISSN 1824-8039.

BARTOŠEK, Miroslav. Archivematica - open source systém pro digitální archivaci. Knihovna. Praha: Národní knihovna ČR, 2015, Ročník 26, č. 2, s. 25-38. ISSN 1801-3252.

LÍŠKA, Martin, Petr SOJKA a Michal RŮŽIČKA. Combining Text and Formula Queries in Math Information Retrieval: Evaluation of Query Results Merging Strategies. In Davood Rafiei, Katsumi Tanaka. NWSearch '15: Proceedings of the First International Workshop on Novel Web Search Interfaces and Systems. New York, NY, USA: ACM, 2015, s. 7-9. ISBN 978-1-4503-3789-2. Dostupné z: https://dx.doi.org/10.1145/2810355.2810359.

TALBOT, Hugo, Nazim HAOUCHINE, Igor PETERLÍK, Jeremie DEQUIDT, Christian DURIEZ, Hervé DELINGETTE a Stephane COTIN. Dirk Bartz Prize for Visual Computing in Medicine. Eurographics Association, 2015.

TÓTH, Šimon a Miroslav RUDA. Distributed job scheduling in MetaCentrum. Journal of Physics: Conference Series. Institute of Physics, 2015, roč. 608, č. 1, s. 012025-12029. ISSN 1742-6596. Dostupné z: https://dx.doi.org/10.1088/1742-6596/608/1/012025.

BARTOŠEK, Miroslav. Dlouhodobé uchování digitálních informací, Archivematica a projekt LTP-pilot. Duha. Brno: Moravská zemská knihovna v Brně, 2015, roč. 29, č. 3, s. 36-37. ISSN 0862-1985.

KOZEL, Jiří, Pavel BOHUMEL, Petr KOVÁCS a Andrea KÝNOVÁ. GIS of Traditional Folk Culture. Geomatics Workbooks. Politecnico di Milano, 2015, roč. 12, July 2015, s. 113-120. ISSN 1591-092X.

GEIDL, Stanislav, Tomáš BOUCHAL, Tomáš RAČEK, Radka SVOBODOVÁ VAŘEKOVÁ, Václav HEJRET, Aleš KŘENEK, Ruben ABAGYAN a Jaroslav KOČA. High-quality and universal empirical atomic charges for chemoinformatics applications. Journal of Cheminformatics. London: BIOMED CENTRAL LTD, 2015, roč. 7, DEC, s. 1-10. ISSN 1758-2946. Dostupné z: https://dx.doi.org/10.1186/s13321-015-0107-1.

HAOUCHINE, Nazim, Stephane COTIN, Igor PETERLÍK, Jeremie DEQUIDT, Mario Sanz LOPEZ, Erwan KERRIEN a Marie-Odile BERGER. Impact of Soft Tissue Heterogeneity on Augmented Reality for Liver Surgery. IEEE Transactions on Visualization and Computer Graphics. 2015, roč. 21, č. 5, s. 584 - 597. ISSN 1077-2626. Dostupné z: https://dx.doi.org/10.1109/TVCG.2014.2377772.

TOMÁŠ, Martin, Tomáš REBOK a Christos EFSTATHIOU. Iterative Optimization of a Multi-compartmental Air Quality Modelling System. In Jan Kofroň and Tomáš Vojnar. Tenth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS 2015). první. Brno: MEMICS 2015, 2015, s. 70-81. ISBN 978-80-214-5254-1.

ČEGAN, Jakub, Pavel ČELEDA, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Jan VYKOPAL, Martin VIZVÁRY, Radek OŠLEJŠEK, Zdenek EICHLER, Dalibor TOTH, Milan ČERMÁK, Jan SOUKAL, Tomáš REBOK, Václav RAČANSKÝ, Ivo NUTÁR a Dušan LAGO. KYPO - Kybernetický polygon. 2015.

DOSTÁL, Otto, Otto DOSTÁL a Michal JAVORNÍK. Legislativní aspekty dalšího rozvoje v oblasti telemedicíny. In XI. mezinárodní kongres informačních technologií ve zdravotnictví. 2015.

MALACH, Roman, Daniel DRÁPALA, Roman DOUŠEK, Alena KŘÍŽOVÁ, Martina PAVLICOVÁ, Miroslav VÁLKA, Jitka SPURNÁ, Andrea KÝNOVÁ, Petr KOVÁCS, Pavel BOHUMEL, Jiří KOZEL, Jana MALECKÁ, Marie NOVOTNÁ, Terézia GABRHELOVÁ, Anna HORÁKOVÁ, Daniela KOSTRHOUNOVÁ, Veronika KUTHANOVÁ, Barbora MACHOVÁ, Eva ŠIPÖCZOVÁ a Barbora VALEŠOVÁ. Mapa bibliografických informací tradiční lidové kultury. 2015.

TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Multicast Routing for High-Quality Multimedia Environments: Deployment and New Problems. Online. In Ingo Schwab, Leo van Moergestel, Gil Gonçalves. INTELLI 2015, The Fourth International Conference on Intelligent Systems and Applications. USA: IARIA, 2015, s. 61-65. ISBN 978-1-61208-437-4.

RUSŇÁK, Vít, Lukáš RUČKA, Pavel KAJABA, Desana DAXNEROVÁ, Matej MINÁRIK, Jiří KAREŠ, Michal BÁBEL a Petr HOLUB. MUSE framework 2.0. 2015.

SPIWOK, Vojtěch, Pavel OBORSKÝ, Jana PAZÚRIKOVÁ, Aleš KŘENEK a Blanka KRÁLOVÁ. Nonlinear vs. linear biasing in Trp-cage folding simulations. Journal of the chemical society. Faraday transactions II, Journal of chemical physics. London: Chemical society, 2015, roč. 142, č. 11, s. nestránkováno, 8 s. ISSN 0021-9606. Dostupné z: https://dx.doi.org/10.1063/1.4914828.

SVOBODA, David, Vladimír ULMAN a Igor PETERLÍK. On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy. In Proceedings of 2015 IEEE International Symposium on Biomedical Imaging. Stoughton (WI, USA): Engineering in Medicine and Biology Society, 2015, s. 712-716. ISBN 978-1-4799-2374-8. Dostupné z: https://dx.doi.org/10.1109/ISBI.2015.7163972.

FILIPOVIČ, Jiří a Siegfried BENKNER. OpenCL Kernel Fusion for GPU, Xeon Phi and CPU. In Proceedings of IEEE International Symposium on Computer Architecture and High Performance Computing. Florianópolis: IEEE, 2015, s. 98-105. ISSN 1550-6533. Dostupné z: https://dx.doi.org/10.1109/SBAC-PAD.2015.29.

FILIPOVIČ, Jiří, Matúš MADZIN, Jan FOUSEK a Luděk MATYSKA. Optimizing CUDA code by kernel fusion: application on BLAS. The Journal of Supercomputing. Springer US, 2015, roč. 71, č. 10, s. 3934-3957. ISSN 0920-8542. Dostupné z: https://dx.doi.org/10.1007/s11227-015-1483-z.

PETERLÍK, Igor. Physics-Based Needle Insertion into Heterogeneous Tissues for Pre-operative Planning. Brno: IHU - Institute of image-guided surgery, 2015, 8 s. 20160201.

POLČÁK, Radim, Zdeněk ŘÍHA a Kamil MALINKA. Právní aspekty interních instrukcí – část II. Data Security Management. Praha: TATE International s.r.o., 2015, XIX., 3., s. 36-38. ISSN 1211-8737.

POLČÁK, Radim, Zdeněk ŘÍHA a Kamil MALINKA. Právní aspekty interních směrnic – část I. Data Security Management. Praha: TATE International s.r.o., 2015, XIX., 2., s. 36-39. ISSN 1211-8737.

PROCHÁZKA, Filip, Tomáš REBOK a Aleš FARDA. První návrh cílové infrastruktury pro provoz systému IRIS. 2015.

PARÁK, Boris, David WALLOM, Slávek LICEHAMMER a Zdeněk ŠUSTR. Public-Private Cloud Federation Challenges. Online. 8th edition. Limassol: IEEE/ACM, 2015, s. 512 - 515. Dostupné z: https://dx.doi.org/10.1109/UCC.2015.91.

NGUYEN, Filip, Tomáš REBOK, Richard LUDVIGH a Václav TUNKA. Ruby Benchmark Suite using Docker. Online. In M. Ganzha, L. Maciaszek, M. Paprzycki. Annals of Computer Science and Information Systems, Volume 5. 2015. vyd. Poland: IEEE, 2015, s. 947-952. ISBN 978-83-60810-66-8. Dostupné z: https://dx.doi.org/10.15439/2015F99.

ČEGAN, Jakub, Pavel ČELEDA, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Jan VYKOPAL, Martin VIZVÁRY, Milan ČERMÁK, Jan SOUKAL, Tomáš REBOK, Ivo NUTÁR a Dušan LAGO. Software pro konfiguraci a monitorování virtuálního prostředí KYPO. 2015.

OŠLEJŠEK, Radek, Zdenek EICHLER, Dalibor TOTH, Pavel ČELEDA, Jakub ČEGAN, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Martin VIZVÁRY a Jan VYKOPAL. Software pro vizualizaci virtuálního prostředí KYPO. 2015.

JANČA, Radim, Kamil MALINKA a Vlasta ŠŤAVOVÁ. Systém pro distribuci dotazníků v počítačových učebnách. 2015.

PETERLÍK, Igor a Antonín KLÍMA. Towards an efficient data assimilation in physically-based medical simulations. Online. In Bin Ma et al. Proceedings of IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2015. Washington, D.C. , USA: IEEE, 2015, s. 1412-1419. ISBN 978-1-4673-6798-1. Dostupné z: https://dx.doi.org/10.1109/BIBM.2015.7359884.

KOUŘIL, Daniel, Marcel POUL a Michal PROCHÁZKA. Using PKI to Provide Credential Delegation in non Web-based Federations. In Proceedings of the International Conference on Information Science and Applications, Lecture Notes in Electrical Engineering. Pattaya, Thailand: Springer Berlin Heidelberg, 2015, s. 525-532. ISBN 978-3-662-46577-6. Dostupné z: https://dx.doi.org/10.1007/978-3-662-46578-3_62.

SLOVÁK, Petr, Petr HOLUB a Pavel TROUBIL. Videokonferenční prostředí pro komunikaci vzdálených skupin a způsob komunikace vzdálených skupin v systému videokonferenčního prostředí. 2015. Patent. Číslo: 305294. Vydavatel: Úřad průmyslového vlastnictví. Místo vydání: Praha, ČR. Název vlastníka: Masarykova Univerzita & CESNET. Datum registrace: 3. 6. 2009. Datum přijetí: 10. 6. 2015.

JAVORNÍK, Michal, Otto DOSTÁL a Aleš ROČEK. Watermarking in Regional Medical Imaging. Online. In Valeri Mladenov, Elias Giacoumidis, Jinlong Wei. Proceedings of the 13th International Conference on Data Networks, Communications, Computers. Hungary: World Scientific and Engineering Academy and Society, 2015, s. 222-226. ISBN 978-1-61804-355-9.

HARAZIM, Hana, Petr ŠTOURAČ, Martina KOSINOVÁ, Olga SMÉKALOVÁ, Roman ŠTOUDEK, Daniel SCHWARZ, Vít RUSŇÁK a Miloš LIŠKA. Zapojení interaktivní výuky do pregraduálního studia akutní medicíny: virtuální pacient, pokročilé simulace a přenosy z operačních sálů. Anesteziologie & intenzivní medicína. Praha: Česká lékařská společnost J.E. Purkyně, 2015, roč. 26, č. 4, s. 202-212. ISSN 1214-2158.

PROCHÁZKA, Michal. Závěrečná zpráva STORK e-Academia pilot. Brno: Masarykova univerzita, 2015, 29 s.

KOUŘIL, Daniel, Tomáš REBOK, Tomáš JIRSÍK, Jakub ČEGAN, Martin DRAŠAR, Martin VIZVÁRY a Jan VYKOPAL. Cloud-based Testbed for Simulation of Cyber Attacks. In Hanan Lutfiyya and Piotr Cholda. Proceedings of the Network Operations and Management Symposium (NOMS 2014). Krakow, Poland: IEEE Xplore Digital Library, 2014, s. 1-6. ISBN 978-1-4799-0913-1. Dostupné z: https://dx.doi.org/10.1109/NOMS.2014.6838298.

PAZÚRIKOVÁ, Jana a Luděk MATYSKA. Convergence of Parareal Algorithm Applied on Molecular Dynamics Simulations. In Petr Hliněný, Zdeněk Dvořák, Jiří Jaroš, Jan Kofroň, Jan Kořenek, Petr Matula, Karel Pala. MEMICS 2014. Brno: NOVPRESS, 2014, s. 101-111. ISBN 978-80-214-5022-6.

IŠTVÁNEK, Jan, Michal JAROŠ, Aleš KŘENEK a Jana ŘEPKOVÁ. Genome assembly and annotation for red clover (Trifolium pratense; Fabaceae). American Journal of Botany. St Louis: Botanical Soc Amer Inc, 2014, roč. 101, č. 2, s. 327-337. ISSN 0002-9122. Dostupné z: https://dx.doi.org/10.3732/ajb.1300340.

KOZEL, Jiří, Pavel BOHUMEL, Petr KOVÁCS a Jitka SPURNÁ. GIS of Traditional Folk Culture. Online. In ESRI. 2014 Esri User Conference Paper Sessions. Neuveden: ESRI, 2014, s. nestránkováno, 15 s.

KOZEL, Jiří, Petr KOVÁCS, Jitka SPURNÁ, Pavel BOHUMEL a Andrea KÝNOVÁ. Kompas - webový GIS Masarykovy univerzity. 2014.

KOVÁCS, Petr a Jiří KOZEL. Kompas – webový GIS Masarykovy univerzity. Online. In Arcdata Praha. Konference GIS Esri v ČR: Sborník příspěvků. Praha: Arcdata Praha, 2014, s. 28-30. ISBN 978-80-905316-1-1.

MAREK, Jiří, Hana RUDOVÁ a Petr HOLUB. Local Search Heuristics for Media Streams Planning with Transcoding. Online. In IEEE 13th International Symposium on Network Computing and Applications NCA 2014. USA: IEEE, 2014, s. 167-170. ISBN 978-1-4799-5393-6. Dostupné z: https://dx.doi.org/10.1109/NCA.2014.32.

RŮŽIČKA, Michal, Petr SOJKA a Martin LÍŠKA. Math Indexer and Searcher under the Hood: History and Development of a Winning Strategy. In Noriko Kando, Hideo Joho, Kazuaki Kishida. Proceedings of the 11th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2014, s. 127-134. ISBN 978-4-86049-065-2.

LÍŠKA, Martin, Petr SOJKA a Michal RŮŽIČKA. Math Indexer and Searcher Web Interface: Towards Fulfillment of Mathematicians' Information Needs. In Stephen M. Watt, James H. Davenport, Alan P. Sexton, Petr Sojka, Josef Urban. Intelligent Computer Mathematics CICM 2014. Proceedings of Calculemus, DML, MKM, and Systems and Projects. LNAI 8543. Zurich: Springer International Publishing Switzerland, 2014, s. 444-448. ISBN 978-3-319-08433-6. Dostupné z: https://dx.doi.org/10.1007/978-3-319-08434-3_36.

SZALAI, Dominik, Robert ŠIŠKA, David FORMÁNEK, Jakub ADLER a Michal RŮŽIČKA. MathCanEval 1.0. 2014.

FORMÁNEK, David, Robert ŠIŠKA, Dominik SZALAI, Jakub ADLER, Michal RŮŽIČKA, Martin LÍŠKA a Petr SOJKA. MathML Canonicalizer 1.0.0. 2014.

RŮŽIČKA, Michal. Maths Information Retrieval for Digital Libraries. 2014. ISBN 978-3-319-08434-3.

TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Media Streams Planning with Uncertain Link Capacities. Online. In IEEE 13th International Symposium on Network Computing and Applications NCA 2014. USA: IEEE, 2014, s. 197-204. ISBN 978-1-4799-5393-6. Dostupné z: https://dx.doi.org/10.1109/NCA.2014.37.

RUSŇÁK, Vít, Lukáš RUČKA, Pavel KAJABA, Desana DAXNEROVÁ, Matej MINÁRIK, Jiří KAREŠ, Michal BÁBEL a Petr HOLUB. MUSE framework 1.5. 2014.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Aleš KŘENEK, Tomáš BOUCHAL a Jaroslav KOČA. NEEMP – Tool for parameterization of empirical charge calculation method EEM. In Chemoinformatics Strasbourg Summer School 2014. 2014.

PROCHÁZKA, Michal, Slávek LICEHAMMER a Luděk MATYSKA. Perun – Modern Approach for User and Service Management. Mauritius: IIMC International Information Management Corporation Ltd, 2014, 11 s. ISBN 978-1-905824-44-1.

KREJČÍŘ, Vlastimil. ResourceSync: Synchronizace zdrojů na internetu. Online. In INFORUM 2014: 20. ročník konference o profesionálních informačních zdrojích. Praha: Albertina icome Praha, 2014, s. nestránkováno, 8 s. ISSN 1801-2213.

BÍL, Michal, Rostislav VODÁK, Jan KUBEČEK, Tomáš REBOK, Tomáš SVOBODA a Petr HLINĚNÝ. Vulnerability analysis methods for road networks. In European Geosciences Union General Assembly 2014 (EGU 2014). 2014.

MALÝ, Martin, Martin VLČEK, Tomáš KREČMER, Vladimír MARŠÍK, Petr GLOS, Pavla FRAŇKOVÁ, Jan KAMENICKÝ, Drahomíra LEDVINKOVÁ, Ondřej MALÝ, Petr KOVÁCS a David MIKSTEIN. Vývoj 3D aplikace v plné verzi. Kovács Petr, Mikstein David, Spurná Jitka, Lebeda Jaromír. 2014.

LÍŠKA, Martin, Petr SOJKA a Michal RŮŽIČKA. WebMIaS 1.5. 2014.

SOJKA, Petr, Michal RŮŽIČKA, Maroš KUCBEL a Martin JARMAR. Accessibility Issues in Digital Mathematical Libraries. In Proceedings of the Conference Universal Learning Design 2013. Brno: Masaryk University, 2013, s. 89-97. ISBN 978-80-210-6270-2.

RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ a Aleš KŘENEK. Advanced implementation of atomic charge calculation with electronegativity equalization. In SVOČ 2013 v Opavě. 2013.

SLOUP, Petr a Tomáš REBOK. Automatic reconstruction of Norway spruce tree models from LiDAR data. In ISPRS2013-SSG. 2013.

SLOUP, Petr, Tomáš REBOK a Jan HANUŠ. Automatic Tree Reconstruction from its Laser Scan [poster]. In Global Change and Resilience. 2013.

HOLUB, Petr, Ondřej VOJTÍŠEK, Dalibor VALÍK, Kristína GREPLOVÁ, Dana KNOFLÍČKOVÁ a Rudolf NENUTIL. BBMRI_CZ Index Service. 2013.

TROUBIL, Pavel, Jiří MAREK, Petr HOLUB a Miloš LIŠKA. CoUniverse 1.0. 2013.

BARTOŠEK, Miroslav, Petr KOVÁŘ a Vlastimil KREJČÍŘ. Digitální knihovna fotografií. 2013.

KREJČÍŘ, Vlastimil, Tomáš HOFMAN, Michal RŮŽIČKA a Miroslav BARTOŠEK. DML-CZ DSpace. 2013.

BARTOŠEK, Miroslav a Jiří RÁKOSNÍK. DML-CZ: The Experience of a Medium-Sized Digital Mathematics Library. Notices of the AMS. Providence (USA): American Mathematical Society, 2013, roč. 60, č. 8, s. 1028-1033. ISSN 0002-9920. Dostupné z: https://dx.doi.org/10.1090/noti1031.

PAZÚRIKOVÁ, Jana a Luděk MATYSKA. Electrostatics' calculation parallel in time. In CECAM workshop on Fast Methods for Long Range Interactions in Complex Particle Systems. 2013.

BOUCHAL, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Tomáš RAČEK, Crina-Maria IONESCU, Stanislav GEIDL, Aleš KŘENEK a Jaroslav KOČA. Empirical charges for chemoinformatics applications. In GCC 2013 - 9th German Conference on Chemoinformatics. 2013. Dostupné z: https://dx.doi.org/10.1186/1758-2946-6-S1-P60.

KREJČÍŘ, Vlastimil, Dominik SZALAI, Miroslav BARTOŠEK a Lucie FABRIKOVÁ. FFdigi DSpace. 2013.

BOUCHE, Thierry, Claude GOUTORBE, Nicolas HOUILLON, Jean-Paul JORDA, Romeo ANGHELACHE, Vittorio COTI ZELATI, Vlastimil KREJČÍŘ a Petr SOJKA. Final report on external imported metadata: Deliverable 3.5 of project EuDML. 1.1 as of 30th January 2013. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2013, 23 s. Deliverable D3.5.

SLOUP, Petr, Tomáš REBOK a Jan HANUŠ. Fully-automated Occlusion-insensitive Norway Spruce Tree Reconstructions from 3D Point Cloud Data [poster]. In ISPRS2013-SSG. 2013.

HOLUB, Petr, Martin ŠROM, Martin PULEC, Jiří MATELA a Martin JIRMAN. GPU-accelerated DXT and JPEG compression schemes for low-latency network transmissions of HD, 2K, and 4K video. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2013, roč. 29, č. 8, s. 1991-2006. ISSN 0167-739X. Dostupné z: https://dx.doi.org/10.1016/j.future.2013.06.006.

HEJTMÁNEK, Lukáš, David ANTOŠ a Luboš KOPECKÝ. Choice of Data Transfer Protocols in Remote Storage Applications. CESNET, z.s.p.o., 2013, 21 s. CESNET Technical Report 1/2013.

MAREK, Jiří, Petr HOLUB a Hana RUDOVÁ. Local Search Heuristics for Media Streams Planning Problem. In Leonard Barolli, Fatos Xhafa, Makoto Takizawa, Tomoya Enokido, Hui-Huang Hsu. Proceedings of the 7th IEEE International Conference on Advanced Information Networking and Applications. Washington: IEEE Computer Society, 2013, s. 945-953. ISBN 978-0-7695-4953-8. Dostupné z: https://dx.doi.org/10.1109/AINA.2013.132.

RŮŽIČKA, Michal. Masaryk University DOI Tools. 2013.

TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Media Streams Planning with Transcoding. Online. In 12th IEEE International Symposium on Network Computing and Applications (NCA 2013). USA: IEEE, 2013, s. 41-48. ISBN 978-0-7685-5043-6. Dostupné z: https://dx.doi.org/10.1109/NCA.2013.46.

RŮŽIČKA, Michal, Petr KOVÁŘ a Vlastimil KREJČÍŘ. Metadata Editor FFdigi. 2013.

SITERA, Jiří, Zdeněk ŠUSTR, Boris PARÁK a Daniel KOUŘIL. Monitoring Virtualized Infrastructure in the Context of Grid Job Execution. International Journal On Advances in Systems and Measurements. 2013, roč. 6, 3,4. ISSN 1942-261X.

RUSŇÁK, Vít, Lukáš RUČKA, Martin ĽUPTÁK a Petr HOLUB. MUSE framework 1.1.1. 2013.

ŠTĚPÁN, Jakub, Petr KULHÁNEK, Milan LENČO, Zora STŘELCOVÁ, Aleš KŘENEK a Jaroslav KOČA. Nemesis - a molecular modeling package. Online. In Uli Fechner. Journal of Cheminformatics 2013, 5(Suppl 1). Goslar (GER): Chemistry Central, 2013, s. 13-14. ISSN 1758-2946. Dostupné z: https://dx.doi.org/10.1186/1758-2946-5-S1-P12.

PAZÚRIKOVÁ, Jana a Luděk MATYSKA. Parallel methods for calculation of long-range electrostatic interactions. arXiv, 2013, 18 s.

BARTOŠEK, Miroslav a Vlastimil KREJČÍŘ. Portál elektronických informačních zdrojů. 2013.

MATELA, Jiří, Martin JIRMAN a Petr HOLUB. Real-time JPEG2000 for Digital Cinema and Large-Scale Image Archiving. San Jose, CA, USA: NVIDIA Corporation, 2013. GPU Technology Conference.

PROCHÁZKA, Michal a Daniel KOUŘIL. RemSig - Bezpečné úložiště digitálních certifikátů. 2013.

LÍŠKA, Martin, Petr SOJKA a Michal RŮŽIČKA. Similarity Search for Mathematics: Masaryk University team at the NTCIR-10 Math Task. In Noriko Kando, Kazuaki Kishida. Proceedings of the 10th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2013, s. 686-691. ISBN 978-4-86049-062-1.

SOCHOR, Jan, Petr HOLUB a Ondřej VOJTÍŠEK. THALAMOSS Data Management Platform. 2013.

REBOK, Tomáš, Petr SLOUP, Jan HANUŠ a Věroslav KAPLAN. Three-dimensional Tree Reconstructions from Terrestrial LiDAR Scans. In National Grid Infrastructure Yearbook 2011-12. 2013, s. 91-95. ISBN 978-80-904689-7-9.

WOJCIECHOWSKI, Krzys, Petr SOJKA, Nicolas HOUILLON, Michal RŮŽIČKA, Radim HATLAPATKA, Vlastimil KREJČÍŘ, Miroslav HRDINA, Jiří SOCHOR, Pavel RYCHLÝ, Aleš HORÁK, Alan SEXTON, Gilberto PEDROSA, Franck LONTIN, Thierry BOUCHE a Maciej KOŁUDA. Toolset for Image and Text Processing and Metadata Enhancements — Final Release: Deliverable 7.4 of project EuDML. 1 as of 9th February 2013. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2013, 24 s. Deliverable D7.4.

RŮŽIČKA, Michal, Petr SOJKA a Vlastimil KREJČÍŘ. Towards Machine-Actionable Modules of a Digital Mathematics Library: The Example of DML-CZ. In J. Carette et al. CICM 2013, LNAI 7961. Berlin / Heidelberg: Springer, 2013, s. 263-277. ISBN 978-3-642-39319-8. Dostupné z: https://dx.doi.org/10.1007/978-3-642-39320-4_17.

RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. Towards User-Aware Multi-Touch Interaction Layer for Group Collaborative Systems. In Kučera, A.; Henzinger, Th.A.; Nešetřil, J.; Vojnar, T.; Antoš, D. Lecture Notes in Computer Science Volume 7721. Revised Selected Papers. Berlin Heidelberg: Springer-Verlag Berlin / Heidelberg, 2013, s. 200-212. ISBN 978-3-642-36044-2. Dostupné z: https://dx.doi.org/10.1007/978-3-642-36046-6_19.

KREJČÍŘ, Vlastimil. Use cases: DML-CZ vs. FFdigi. In OAI8 DSpace User Group Meeting (pre-conference to The CERN Workshop on Innovations in Scholarly Communication (OAI8)). 2013.

TÓTH, Gabriel a Petr HOLUB. VLANManager. 2013.

MALÝ, Martin, Martin VLČEK, Tomáš KREČMER, Vladimír MARŠÍK, Petr GLOS, Pavla FRAŇKOVÁ, Jan KAMENICKÝ, Drahomíra LEDVINKOVÁ, Ondřej MALÝ, Petr KOVÁCS, David MIKSTEIN, Jaromír LEBEDA a Jitka SPURNÁ. Vývoj 3D aplikace v základní verzi. Kovács Petr, Mikstein David, Spurná Jitka, Lebeda Jaromír. 2013.

KOVÁCS, Petr a Jaromír LEBEDA. Zadávací aplikace GISTraLiK. 2013.

KŘENEK, Aleš, Petr HOLUB, Vlastimil HOLER, Daniel KOUŘIL, Filip PROCHÁZKA, Zdeněk HEJNA, Miroslav GURIČAN a František MULLER. 3.5 Million Smartmeters in the Cloud. Online. In Simon Lin. Proceedings ISGC 2013. Trieste: PoS - Proceedings of Science, 2013, s. 180-189. ISSN 1824-8039.

HOLUB, Petr, Martin PULEC, Jiří MATELA, Martin JIRMAN, Joe MAMBRETTI, Jim CHEN, Fei YEH a Luc RENAMBOT. CZ02: Remote Collaboration Over 8K Visualization Using UltraGrid and SAGE. Chicago, USA, 2012. GLIF Technical Working Group Meeting #18.

MÁCKOVÁ, Zdeňka a Miroslav BARTOŠEK. Digitální knihovna Filozofické fakulty Masarykovy univerzity. Duha [online]. Brno: Moravská zemská knihovna, 2012, roč. 26, č. 1. ISSN 1804-4255.

SLOVÁK, Petr, Peter NOVÁK, Pavel TROUBIL, Vít RUSŇÁK, Petr HOLUB a Eric C. HOFER. Exploring collaboration in group-to-group videoconferencing. In Julie Dugdale, Cédric Masclet, Maria Antonietta Grasso, Jean François Boujut, Parina Hassanaly. From Research to Practice in the Design of Cooperative Systems: Results and Open Challenges; Proceedings of the 10th International Conference on the Design of Cooperative Systems. London: Springer, 2012, s. 229-244, 15 s. ISBN 978-1-4471-4092-4. Dostupné z: https://dx.doi.org/10.1007/978-1-4471-4093-1_16.

TROUBIL, Pavel a Petr HOLUB. GColl2. 2012.

MATELA, Jiří, Petr HOLUB, Martin JIRMAN a Martin ŠROM. GPU-specific reformulations of image compression algorithms. Online. In Tescher, AG. Proceedings of Applications of Digital Image Processing XXXV. 8499. vyd. BELLINGHAM, WA 98227-0010 USA: SPIE-INT SOC OPTICAL ENGINEERING, 2012, s. nestránkováno, 8 s. ISBN 978-0-8194-9216-6. Dostupné z: https://dx.doi.org/10.1117/12.929971.

FEIT, Josef, Lukáš HEJTMÁNEK, Michal PROCHÁZKA, Slávek LICEHAMMER a Luděk MATYSKA. Hypertext Atlases of Pathology. 2012. ISSN 0945-6317.

RUČKA, Lukáš, Vít RUSŇÁK a Petr HOLUB. Libkerat - TUIO 2.0 implementation, version 1.0. 2012.

KREMSER, Jiří, Božena KOVÁČOVÁ, Marta PAVLOVSKÁ, Lukáš HEJTMÁNEK a David ANTOŠ. Long Term Preservation of Digital Data—Background Research. 2012.

MATELA, Jiří, Martin ŠROM a Petr HOLUB. Low GPU Occupancy Approach to Fast Arithmetic Coding in JPEG2000. In Lecture Notes in Computer Science 7119. Heidelberg: Springer Berlin / Heidelberg, 2012, s. 136-145. ISBN 978-3-642-25928-9. Dostupné z: https://dx.doi.org/10.1007/978-3-642-25929-6_13.

KOTÁSEK, Zdeněk, Jan BOUDA, Ivana ČERNÁ, Lukáš SEKANINA, Tomáš VOJNAR a David ANTOŠ. Mathematical and Engineering Methods in Computer Science MEMICS 2011, Seventh International Doctoral Workshop, Revised Selected Papers. Springer-Verlag, 2012, 215 s. ISBN 978-3-642-25928-9. Dostupné z: https://dx.doi.org/10.1007/978-3-642-25929-6.

LÍŠKA, Martin, David FORMÁNEK, Michal RŮŽIČKA a Petr SOJKA. MathML Canonicalizer. 2012.

RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. MUSE framework 1.0. 2012.

KLUSÁČEK, Dalibor, Hana RUDOVÁ a Miroslav RUDA. New Fairness and Performance Metrics for Current Grids. In Cracow Grid Workshop 2012. 2012. ISBN 978-83-61433-06-4.

FORMÁNEK, David, Martin LÍŠKA, Michal RŮŽIČKA a Petr SOJKA. Normalization of Digital Mathematics Library Content. In Petr Sojka, Michael Kohlhase. DML 2012: Towards a Digital Mathematics Library. Brno: Masaryk University, 2012, s. 91-103. ISSN 1613-0073.

FORMÁNEK, David, Martin LÍŠKA, Michal RŮŽIČKA a Petr SOJKA. Normalization of Digital Mathematics Library Content. In CEUR Workshop Proceedings, Volume 921. Aachen: Neuveden, 2012, s. 91-103, 12 s. ISSN 1613-0073.

KREJČÍŘ, Vlastimil. Oktávo – digitální knihovna FF MU. In 5. setkání českých uživatelů systému DSpace. 2012.

KABÁT, Milan a Petr HOLUB. Parallelized LDGM Coding for Demanding Multimedia Applications. In Antonin Kucera, Thomas A. Henzinger, Jaroslav Nesetril, Tomas Vojnar, David Antos. Memics 2012, Eighth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. First edition. Brno: Novpress s.r.o., 2012, s. 28-37. ISBN 978-80-87342-15-2.

CHLUMSKÝ, Václav, Dalibor KLUSÁČEK a Miroslav RUDA. Planning, Predictability and Optimization within the TORQUE Scheduler. In Antonín Kučera, Thomas Henzinger, Jaroslav Nešetřil, Tomáš Vojnar, David Antoš. MEMICS 2012. první. Brno: Novpress s.r.o., 2012, s. 96-97. ISBN 978-80-87342-15-2.

TÓTH, Šimon a Miroslav RUDA. Practical Experiences with Torque Meta-Scheduling in The Czech National Grid. Krakow, Poland: AGH University of Science and Technology Press, 2012, s. 33-45. ISSN 1508-2806.

HOLUB, Petr, Kamila GREPLOVÁ, Dana KNOFLÍČKOVÁ a Dalibor VALÍK. The Biobanking Research Infrastructurec BBMRI_CZ: a Critical Tool to Enhance. Klinická onkologie. Praha: Česká lékařská společnost J.E.Purkyně, 2012, roč. 2012, č. 2, s. 2S78- 2S81, 4 s. ISSN 0862-495X.

KLUSÁČEK, Dalibor, Václav CHLUMSKÝ a Miroslav RUDA. THE EXTENSION OF TORQUE SCHEDULER ALLOWING THE USE OF PLANNING AND OPTIMIZATION IN GRIDS. Computer Science Journal. Krakow, Poland: AGH University of Science and Technology, 2012, roč. 13, č. 2, s. 5-19. ISSN 1508-2806. Dostupné z: https://dx.doi.org/10.7494/csci.2012.13.2.5.

SOJKA, Petr, Krzysztof WOJCIECHOWSKI, Nicolas HOUILLON, Michal RŮŽIČKA a Radim HATLAPATKA. Toolset for Image and Text Processing and Metadata Enhancements — Value release: Deliverable 7.3 of project EuDML. 1.01 as of 8th March 2012. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2012, 32 s. Deliverable D7.3.

HOLUB, Petr, Jiří MATELA, Martin PULEC a Martin ŠROM. UltraGrid: Low-Latency High-Quality Video Transmissions on Commodity Hardware. In Proceedings of the 20th ACM international conference on Multimedia. New York, NY, USA: ACM, 2012, s. 1457-1460. ISBN 978-1-4503-1089-5. Dostupné z: https://dx.doi.org/10.1145/2393347.2396519.

HOLUB, Petr, Martin PULEC, Jiří MATELA, Martin ŠROM a Martin JIRMAN. UltraGrid 1.1. 2012.

HŘEBÍČEK, Jiří, Miroslav KUBÁSEK, Lukáš KOHÚT, Luděk MATYSKA, Lucia TOKÁROVÁ a Jaroslav URBÁNEK. Vědecké výpočty v matematické biologii. Brno: Akademické nakladatelství CERM, 2012, 117 s. ISBN 978-80-7204-781-9.

KUČERA, Antonín, Thomas A. HENZINGER, Jaroslav NEŠETŘIL, Tomáš VOJNAR a David ANTOŠ. 8th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS, 2012. ISBN 978-80-87342-15-2.

PROCHÁZKA, Michal, Daniel KOUŘIL, Romain WARTEL, Christos KANELLOPOULOS a Christos TRIANTAFYLLIDIS. A Race for Security: Identifying Vulnerabilities on 50 000 Hosts Faster than Attackers. Taipei, Taiwan: Academia Sinica, 2011. ISGC 2011 & OGF 31.

SOJKA, Petr, Martin LÍŠKA a Michal RŮŽIČKA. Building Corpora of Technical Texts : Approaches and Tools. In Aleš Horák, Pavel Rychlý. Fifth Workshop on Recent Advances in Slavonic Natural Languages Processing, RASLAN 2011. první. Brno: Tribun EU, 2011, s. 71--82, 11 s. ISBN 978-80-263-0077-9.

MATYSKA, Luděk a David ANTOŠ. Centrum CERIT-SC po roce příprav. ÚVT MU, 2011, 3 s. Zpravodaj ÚVT MU, roč. XXI, č. 3. ISSN 1212-0901.

KREJČÍŘ, Vlastimil. Co je (staro)nového v DSpace. In 4. setkání českých uživatelů systému DSpace. 2011.

GOLEMBIOVSKÝ, Tomáš a Aleš KŘENEK. Compression of Vector Field Changing in Time. Online. In Ludek Matyska, Michal Kozubek, Tomas Vojnar and Pavel Zemcik, David Antos. Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Dagstuhl: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011, s. 40-46. ISBN 978-3-939897-22-4.

BARTOŠEK, Miroslav. Česká digitální matematická knihovna a projekt EuDML. In 6. Česko-slovenské soustředění matematické olympiády a Setkání českých a slovenských matematiků. 2011.

HOLUB, Petr, Hana RUDOVÁ a Miloš LIŠKA. Data Transfer Planning with Tree Placement for Collaborative Environments. Constraints. Springer, 2011, roč. 16, č. 3, s. 283-316. ISSN 1383-7133. Dostupné z: https://dx.doi.org/10.1007/s10601-011-9106-7.

BARTOŠEK, Miroslav. DML-CZ: česká digitální matematická knihovna v roce 2011. ProInflow. Brno: Masarykova univerzita, 2011, roč. 3, listopad, s. 5-12. ISSN 1804-2406.

HARTMAN, Sam, Jens JENSEN, Daniel KOUŘIL a Michal PROCHÁZKA. Easing Access to Grids Using Moonshot. Praha: TERENA Networking Conference, 2011.

MATELA, Jiří, Vít RUSŇÁK a Petr HOLUB. Efficient JPEG2000 EBCOT Context Modeling for Massively Parallel Architectures. In Storer, James A. and Marcellin, Michael W. Data Compression Conference (DCC), 2011. Washington, DC, USA: IEEE Computer Society, 2011, s. 423-432. ISBN 978-0-7695-4352-9. Dostupné z: https://dx.doi.org/10.1109/DCC.2011.49.

RADOSLAV, Bodó a Daniel KOUŘIL. EGI Security challenge 5: Lehce na cvičišti . . . In Sborník příspěvků 39. konference EurOpen.CZ. 2011. ISBN 978-80-86583-22-8.

SLOVÁK, Petr, Peter NOVÁK, Pavel TROUBIL, Petr HOLUB a Eric HOFER. Exploring Trust in Group-to-Group Video-Conferencing. Online. In CHI EA '11 Proceedings of the 2011 annual conference extended abstracts on Human factors in computing systems. New York, NY, USA: ACM New York, NY, USA, 2011, s. 1459-1464. ISBN 978-1-4503-0268-5. Dostupné z: https://dx.doi.org/10.1145/1979742.1979791.

KOUŘIL, Daniel, Sam HARTMAN, Josh HOWLETT, Jens JENSEN a Michal PROCHÁZKA. Federated Access to Grids. Vilnius: EGI User Forum, 2011.

MATELA, Jiří, Vít RUSŇÁK a Petr HOLUB. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science -- Selected Papers. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011, s. 77--84. ISBN 978-3-939897-22-4.

PROCHÁZKA, Michal a Daniel KOUŘIL. Jak sledovat zranitelnosti na 50 000 strojích. Data Security Management. Praha: Tate International, 2011, roč. 1/2011, s. 14-17. ISSN 1211-8737.

ANTOŠ, David, Petr HOLUB a Ivana KŘENKOVÁ. Kterak posluchárny spojovati a ještě záznam poříditi aneb audiovizuální technika na MU. ÚVT MU, 2011, 5 s. Zpravodaj ÚVT MU, roč. XXI, č. 3. ISSN 1212-0901.

KOTÁSEK, Zdeněk, Jan BOUDA, Ivana ČERNÁ, Lukáš SEKANINA, Tomáš VOJNAR a David ANTOŠ. MEMICS 2011, Seventh Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno University of Technology, Antonínská 548/1, Brno 601 90, 2011, 146 s. ISBN 978-80-214-4305-1.

MATELA, Jiří, Martin PULEC a Petr HOLUB. multiOUT. 2011.

RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. MUSE framework 0.1. 2011.

RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. MUSE: Multi-Sensor Framework. 2011.

BARTOŠEK, Miroslav, Michal BRANDEJS a Ivana ČERNÁ. Otevřený přístup k vědeckým informacím na Masarykově univerzitě. ITlib. Informačné technológie a knižnice. Bratislava: Centrum VTI SR, 2011, roč. 2011, č. 2, s. 34-35. ISSN 1335-793X.

MATYSKA, Luděk, Miroslav RUDA a Šimon TÓTH. Peer-to-peer Cooperative Scheduling Architecture for National Grid Infrastructure. In Simon C.Lin, Eric Yen. Data Driven e-Science. Academia Sinica Grid Computing Centre, 2011, s. 105-118. ISBN 978-1-4419-8014-4.

RŮŽIČKA, Michal. Použití Subversion pro verzování TeXových dokumentů. Zpravodaj CSTUG. Brno: CSTUG, 2011, roč. 2011, č. 1, s. 21–64. ISSN 1211-6661. Dostupné z: https://dx.doi.org/10.5300/2011-1/21.

RŮŽIČKA, Michal a Petr SOJKA. Redakční systém odborného časopisu s podporou exportu do digitální knihovny. Zpravodaj CSTUG. Brno: CSTUG, 2011, roč. 2011, č. 1, s. 4–20. ISSN 1211-6661. Dostupné z: https://dx.doi.org/10.5300/2011-1/4.

ŠPÁNEK, Roman, Daniel KOUŘIL, Martin KUBA a Michal PROCHÁZKA. Reputation Based Trust Management System Supporting Collaboration in a Medical Application. In Proceedings of e-Technologies and Networks for Development (ICeND 2011), Communications in Computer and Information Science, vol. 171. Heidelberg: Springer Berlin, 2011, s. 285-297. ISBN 978-3-642-22729-5.

RŮŽIČKA, Michal a Petr SOJKA. Scientific Journal Processing System with the Capability of Exporting to a Digital Library using MathML. 2011.

RŮŽIČKA, Jan, Miroslav VOZŇÁK, Petr HOLUB, Jiří MATELA, Michal KRSEK, Jiří NAVRÁTIL, Lukáš MACURA, Miloš LIŠKA a Filip ŘEZÁČ. Seminář multimédií. 2011.

MATYSKA, Luděk, Michal KOZUBEK, Tomáš VOJNAR, Pavel ZEMČÍK a David ANTOŠ. Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS'10) -- Selected Papers. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011. ISBN 978-3-939897-22-4.

CHLUMSKÝ, Václav, Dalibor KLUSÁČEK a Miroslav RUDA. The Extension of TORQUE Scheduler Allowing the Use of Planning and Optimization Algorithms in Grids. In Cracow Grid Workshop. 2011.

TÓTH, Šimon, Miroslav RUDA a Luděk MATYSKA. Towards Peer-to-Peer Scheduling Architecture for the Czech National Grid. Krakow, Poland: Academic Computer Centre CYFRONET AGH, 2011, s. 92-101. ISBN 978-83-61433-03-3.

PULEC, Martin, Jiří MATELA a Petr HOLUB. UltraGrid Streaming to SAGE. 2011.

PULEC, Martin, Martin ŠROM, Petr HOLUB a Jiří MATELA. UltraGrid 0.9. 2011.

PULEC, Martin, Petr HOLUB, Jiří MATELA, Martin ŠROM a Martin JIRMAN. UltraGrid 1.0. 2011.

BALÁKOVÁ, Lenka, Petr ŠTOURAČ, Ivo KŘIKAVA, Pavel ŠEVČÍK, Daniel SCHWARZ, Ivo ŠNÁBL, Radim ŠUSTR a Petr HOLUB. Využití e-learningového portálu AKUTNE.CZ při studiu medicíny. In Petr Sojka, Martin Kvizda. Sborník SCO 2011. 1. vyd. Brno: MUNI Press, 2011, s. 165-169. ISBN 978-80-210-5528-5.

LÍŠKA, Martin, Petr SOJKA, Michal RŮŽIČKA a Peter MRAVEC. Web Interface and Collection for Mathematical Retrieval : WebMIaS and MREC. In Petr Sojka, Thierry Bouche. DML 2011: Towards a Digital Mathematics Library. Brno: Masaryk University, 2011, s. 77-84. ISBN 978-80-210-5542-1.

KMUNÍČEK, Jan, Daniel KOUŘIL, Luděk MATYSKA, Zora STŘELCOVÁ, Petr KULHÁNEK, Jaroslav KOČA a Eric YEN. Catch-All Virtual Organizations - Solution for Heterogeneous and Disperse Grid Users Communities. In Lin, S. C.; Yen, E. Managed Grids and Cloud Systems in the Asia-Pacific Research Community. New York: Springer, 2010, s. 299-309. ISBN 978-1-4419-6468-7. Dostupné z: https://dx.doi.org/10.1007/978-1-4419-6469-4_22.

HOLUB, Petr, Miloš LIŠKA, Hana RUDOVÁ a Pavel TROUBIL. Comparison of CP and IP Techniques for Data Transfer Planning. In Proceedings of the Eleventh AI*IA Symposium on Artificial Intelligence. 2010. ISBN 978-88-904924-1-9.

GOLEMBIOVSKÝ, Tomáš a Aleš KŘENEK. Compression of Vector Field Changing in Time. In MEMICS 2010: Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS, s.r.o., 2010, s. 76-83. ISBN 978-80-87342-10-7.

LIŠKA, Miloš, Petr HOLUB, Andrew LAKE a John VOLLBRECHT. CoUniverse Orchestrated Collaborative Environments with Dynamic Circuit Networks. 2010 Ninth International Conference on Networks, 2010, s. 300-305. ISBN 978-0-7695-3979-9.

WELSHONS, Kenny, Patrick DORN, Andrei HUTANU, Petr HOLUB, John VOLLBRECHT a Gabrielle ALLEN. Design and Implementation of a Production Dynamically Configurable Testbed. In TG '10 Proceedings of the 2010 TeraGrid Conference. Pittsburgh, PA, USA: ACM New York, NY, USA, 2010, s. 1-8. ISBN 978-1-60558-818-6.

TROUBIL, Pavel a Petr HOLUB. Eye-Control of Videoconferencing Environment Using Common Web-Cameras. In Proceedings of the IADIS International Conferences Collaborative Technologies 2010 and Web Based Communities 2010. Freiburg: IADIS Press, 2010, s. 153-156. ISBN 978-972-8939-21-2.

SLOVÁK, Petr, Pavel TROUBIL a Petr HOLUB. GColl: enhancing trust in flexible group-to-group videoconferencing. In Proceedings of the 28th of the international conference extended abstracts on Human factors in computing systems. New York, NY, USA: ACM, 2010, s. 3607-3612. ISBN 978-1-60558-930-5.

MATELA, Jiří, Vít RUSŇÁK a Petr HOLUB. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. In MEMICS 2010 Proceedings. first. Brno: NOVPRESS, 2010, s. 126-134. ISBN 978-80-87342-10-7.

KOUŘIL, Daniel. Grid Security Developments. Hamburg: TERENA TF-CSIRT, 2010.

ŠTĚPÁN, Jakub, Petr KULHÁNEK, Zdeněk KŘÍŽ, Jan KMUNÍČEK, Jaroslav KOČA a Luděk MATYSKA. grid-CICADA: Efficient Explorer of Conformational Space of Biomolecular Systems. In 5th EGEE User Forum. 2010.

PETERLÍK, Igor, Luděk MATYSKA a Jiří FILIPOVIČ. Haptic Interaction with Complex Models Based on Precomputations. Online. In Advances in Haptics. Vukovar (Croatia): IN-TECH, 2010, s. 333-356. ISBN 978-953-307-093-3.

HOLUB, Petr. H.323 for Medical Application and Virtual Laboratories. In 3rd E2EWorkshop on Provisioning E2E Services. 2010.

DRAŠAR, Martin, Martin JUŘEN, Daniel KOUŘIL, Pavel MINAŘÍK, Michal PROCHÁZKA a Jan VYKOPAL. Intelligent logging server. Warsaw: SECURE 2010, 2010.

MATYSKA, Luděk, Michal KOZUBEK, Tomáš VOJNAR, Pavel ZEMČÍK a David ANTOŠ. MEMICS 2010: Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS s.r.o., 2010, 213 s. ISBN 978-80-87342-10-7.

KŘENKOVÁ, Ivana, David ANTOŠ a Luděk MATYSKA. MetaCentrum Yearbook 2009. first. Prague: CESNET, z. s. p. o., 2010, 172 s. ISBN 978-80-904173-7-3.

KMUNÍČEK, Jan, Martin KUBA, Ivana KŘENKOVÁ a David ANTOŠ. MetaCentrum—e-Infrastructure for Computational and Data Challenges. Nové Hrady, 2010.

BARTOŠEK, Miroslav, Petr KOVÁŘ a Michal RŮŽIČKA. Metadata Editor EuDML. 2010.

HOLUB, Petr. Network-Based Collaborative Environments. In Informatics Colloquium FI MU. 2010.

KREJČÍŘ, Vlastimil a Ľuboš KOHÚT. Programování v systému DSpace (API, Manakin/XMLUI). 2010.

ANTOŠ, David, Martin OSOVSKÝ, Marek SAITL a Václav LORENC. Ráno Eduroamisto, večer takisto. 2010, 6 s. Zpravodaj ÚVT MU, roč. XXI, č. 2. ISSN 1212-0901.

COLLING, David, Janusz MARTYNIAK, Andrew MCGOUGH, Aleš KŘENEK, Jiří SITERA, Miloš MULAČ a František DVOŘÁK. Real Time Monitor of Grid job executions. Journal of Physics: Conference Series. 2010, roč. 219, č. 6, 9 s. ISSN 1742-6596.

PETERLÍK, Igor, Mert SEDEF, Cagatay BASDOGAN a Luděk MATYSKA. Real-time visio-haptic interaction with static soft tissue models having geometric and material nonlinearity. Computers & Graphics. Elsevier, 2010, roč. 34, č. 1, s. 43-54. ISSN 0097-8493.

BOUCHE, Thierry, Hugo MANGUINHAS, Claude GOUTORBE, Nicolas HOUILLON, Rosa DE LA VIESCA, Helena FERNANDEZ, Jean-Paul JORDA, Marie-Louise CHAIX, Katarzyna ZAMLYNSKA, Wojtek SYLWESTRZAK, Michael JOST, Radoslav PAVLOV, Jiří RÁKOSNÍK, Miroslav BARTOŠEK, Petr SOJKA, Ioannis KARYDIS a Thomas FISCHER. Report on available collections and metadata: Deliverable 3.1 of project EuDML. 1.6 as of 5th August 2010. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2010, 40 s. Deliverable D3.1.

KREJČÍŘ, Vlastimil. Shibboleth v systému DSpace. In Shibboleth v praxi. 2010.

ŠUSTR, Zdeněk, Jiří SITERA, František DVOŘÁK, Jiří FILIPOVIČ, Daniel KOUŘIL, Aleš KŘENEK, Luděk MATYSKA, Miloš MULAČ, Jan POSPÍŠIL, Miroslav RUDA, Zdeněk SALVET a Michal VOCŮ. Something you may have wanted to know about L&B. Journal of Physics: Conference Series. 2010, roč. 219, č. 6, 10 s. ISSN 1742-6596.

SAMEC, Martin, Jaromír LEBEDA a Petr KOVÁCS. Technologický pasport MU. 2010.

HRBATÝ, Dušan, Jakub MAREČEK, Michal VÁVRA, Tomáš REBOK, Eva HLADKÁ, Jan DOLEČEK, Martin JANTOŠOVIČ, František KOBZÍK, Michal KOHUT, Vít RUSŇÁK, Martin SKALA, Daniel STIBOR a Jiří ŠKROBÁK. Testy softwarových VoIP klientů. Brno: Laboratoř pokročilých síťových technologií FI MU, 2010.

JOST, Michael, Thierry BOUCHE, Claude GOUTORBE, Jean-Paul JORDA, Miroslav BARTOŠEK, Peter STANCHEV a Michał POLITOWSKI. The EuDML metadata schema: Deliverable D3.2 of project EuDML. 1.6 as of 15th December 2010. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2010, 31 s. Deliverable D3.2.

HOLUB, Petr. Unassisted Lecture Recording at Masaryk University. In 3rd TF-Media task force meeting. 2010.

PROCHÁZKA, Michal, Daniel KOUŘIL a Luděk MATYSKA. User Centric Authentication for Web Applications. In Proceedings of the 2010 International Symposium on Collaborative Technologies and Systems. Chicago, USA: IEEE, 2010, s. 67-74. ISBN 978-1-4244-6620-7.

RUDA, Miroslav, Zdeněk ŠUSTR, Jiří SITERA, David ANTOŠ, Lukáš HEJTMÁNEK a Petr HOLUB. Virtual Clusters as a New Service of MetaCentrum, the Czech NGI. In Cracow Grid Workshop '09. Krakow: Academic Computer Centre CYFRONET AGH, 2010, s. 64-71. ISBN 978-83-61433-01-9.

HOLUB, Petr a Eva HLADKÁ. Virtual Multicast. In Trends in Telecommunications Technologies. 1. vyd. Vukovar, Croatia: IN-TECH, 2010, s. 63-85. ISBN 978-953-307-072-8.

LIŠKA, Miloš a Petr HOLUB. CoUniverse: Framework for Building Self-Organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. In The Eighth International Conference on Networks ICN 2009. Cancún, Mexico: IARIA, 2009, s. 259-265. ISBN 978-0-7695-3552-4.