Výpis publikací

HASSAN, Ahmed Adel Ibrahim Hassona, Matyáš PINKAS, Kosuke ITO, Toshio UCHIUMI a Gabriel DEMO. A novel archaeal ribosome anti-association factor promoting a distinctive 30S-30S dimerization. In RNA society meeting 2024. 2024.

HASSAN, Ahmed Adel Ibrahim Hassona, Matyáš PINKAS, Kosuke ITO, Toshio UCHIUMI a Gabriel DEMO. Distinct 30S subunit dimerization architecture facilitated by a novel ribosome dimerization factor in archaea. In XX Discussions in Structural Molecular Biology. 2024. ISSN 1805-4382.

SOARES GUERRA, Gabriel, Fedor Alexander ŽUPNÍK, Matyáš PINKAS a Gabriel DEMO. Unveiling the coupling of transcription and translation in bacteria. In XX Discussions in Structural Molecular Biology. 2024. ISSN 1805-4382.

ZAFAR, Hassan, Ludmila VESELÁ, Ahmed Adel Ibrahim Hassona HASSAN, Xueliang GE, Suparna SANYAL a Gabriel DEMO. DECIPHERING THE FUNCTIONALITY OF THE UNSTRUCTURED N-TERMINAL DOMAIN OF THE BACTERIAL INITIATION FACTOR 2. In NIVB meeting 2023. 2023. ISSN 2336-7210.

DAS, Amiyaranjan, Julia BARTULI, Clemens GRIMM, Utz FISCHER a Gabriel DEMO. INTERPLAY BETWEEN VIRAL TRANSCRIPTION AND HOST TRANSLATION. In NIVB meeting 2023. 2023. ISSN 2336-7210.

ZAFAR, Hassan a Gabriel DEMO. Liquid-liquid phase separation of a bacterial translation factor. In XXVIIth Biochemistry congress of Czech Society for Biochemistry and Molecular Biology. 2023. ISBN 978-80-8240-047-5.

HASSAN, Ahmed Adel I. H., Kosuke ITO, Toshio UCHIUMI a Gabriel DEMO. Ribosome hibernation in archaea. In XXVIIth Biochemistry congress of Czech Society for Biochemistry and Molecular Biology. 2023. ISBN 978-80-8240-047-5.

HASSAN, Ahmed Adel I. H., Yuko NAKANO, Gregor BLAHA, Ya-Ming HOU a Gabriel DEMO. RimM and RsfS ribosomal factors regulate the translation in bacteria. In XIX Discussions in Structural Molecular Biology. 2023.

HASSAN, Ahmed Adel Ibrahim Hassona, Christian IHLING, Claudio IACOBUCCI, Panagiotis L KASTRITIS, Andrea SINZ a Tobias KRUSE. The structural principles underlying molybdenum insertase complex assembly. Protein Science. MALDEN: WILEY-BLACKWELL, 2023, roč. 32, č. 9, s. 1-13. ISSN 0961-8368. Dostupné z: https://dx.doi.org/10.1002/pro.4753.

ZAFAR, Hassan, Hassan AHMED a Gabriel DEMO. Translation machinery captured in motion. Wiley Interdisciplinary Reviews: RNA. Hoboken, USA: WILEY-BLACKWELL, 2023, roč. 14, č. 5, s. 1-17. ISSN 1757-7004. Dostupné z: https://dx.doi.org/10.1002/wrna.1792.

ZAFAR, Hassan a Jr Milton, H. SAIER. Understanding the Relationship of the Human Bacteriome with COVID-19 Severity and Recovery. Advances in Fuel Cells. BASEL: Elsevier, 2023, roč. 12, č. 9, s. 1-31. ISSN 2073-4409. Dostupné z: https://dx.doi.org/10.3390/cells12091213.

DAS, Amiyaranjan, Julia BARTULI, Clemens GRIMM, Utz FISCHER a Gabriel DEMO. Viral transcription-translation coupling in mammalian cells. In XIX Discussions in Structural Molecular Biology. 2023.

HIRIYUR NAGARAJ, Pradeep, Lucie SLÁMOVÁ, Sylva BRABENCOVÁ a Gabriel DEMO. Active transcription-translation coupling at the early translation elongation stages. In 16th Multinational congress on Microscopy. 2022. ISBN 978-80-11-02253-2.

HIRIYUR NAGARAJ, Pradeep, Ahmed Adel I. H. HASSAN, Sylva BRABENCOVÁ, Lucie SLÁMOVÁ a Gabriel DEMO. BIOCHEMICAL ANALYSIS OF COMPLEX FORMATION BETWEEN RNA POLYMERASE AND RIBOSOME. In National Institute of Virology and Bacteriology Meeting, Kutná Hora. 2022. ISSN 2336-7210.

VESELÁ, Ludmila, Ahmed Adel I. H. HASSAN, Sylva BRABENCOVÁ, Lucie SLÁMOVÁ a Gabriel DEMO. CELLULAR COLOCALIZATION OF TRANSCRIPTION AND TRANSLATION. In National Institute of Virology and Bacteriology Meeting, Kutná Hora. 2022. ISSN 2336-7210.

ZAFAR, Hassan a Milton H Jr SAIER. Comparative Analyses of the Transport Proteins Encoded within the Genomes of nine Bifidobacterium Species. MICROBIAL PHYSIOLOGY. SWITZERLAND: KARGER, 2022, roč. 32, 1-2, s. 30-44. ISSN 2673-1665. Dostupné z: https://dx.doi.org/10.1159/000518954.

DEMO, Gabriel, Howard GAMPER, Anna LOVELAND, Isao MASUDA, Christine CARBONE, Egor SVIDRITSKYI, Ya MIng HOU a Andrei KOROSTELEV. CryoEM ensemble reveals the mechanism of 1 ribosomal frame shifting. In XVIII Discussions in Structural Molecular Biology. 2022.

GAUBITZ, Christl, Xingchen LIU, Joshua PAJAK, Nicholas P STONE, Janelle A HAYES, Gabriel DEMO a Brian A KELCH. Cryo-EM structures reveal high-resolution mechanism of a DNA polymerase sliding clamp loader. elife. CAMBRIDGE: ELIFE SCIENCES PUBLICATIONS LTD, 2022, roč. 11, FEB, s. nestrankovano, 29 s. ISSN 2050-084X. Dostupné z: https://dx.doi.org/10.7554/eLife.74175.

DEMO, Gabriel, Anna LOVELAND, Christine CARBONE, Egor SVIDRITSKIY a Andrei KOROSTELEV. Ensemble and time-resolved cryo-EM in transcription and translation. In XXI. setkani biochemiku a molekularnich biologu. 2022. ISBN 978-80-280-0136-0.

PETERKOVÁ, Kateřina, Ivo DURNÍK, Radek MAREK, Janez PLAVEC a Peter PODBEVŠEK. Pyrene-Lablled G-Quadruplexes Derived from the KIT Proto-Oncogene. In 35th Central European NMR Meeting, VALTICE, 2022. 2022.

LOVELAND, Anna B, Egor SVIDRITSKIY, Denis SUSOROV, Soojin LEE, Alexander PARK, Sarah ZVORNICANIN, Gabriel DEMO, Fen-Biao GAO a Andrei A KOROSTELEV. Ribosome inhibition by C9ORF72-ALS/FTD-associated poly-PR and poly-GR proteins revealed by cryo-EM. Nature Communications. London: Nature Publishing Group, 2022, roč. 13, č. 1, s. 2776-2788. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-022-30418-0.

PETERKOVÁ, Kateřina, Ivo DURNÍK, Radek MAREK, Janez PLAVEC a Peter PODBEVŠEK. Structural analysis of pyrene-labelled G-quadruplexes derived from the KIT proto-oncogene. In XIIth International conference, NMR: a tool for biology, Institut Pasteur. 2022.

JOURAVLEVA, Karina, Dmitrij GOLOVENKO, Gabriel DEMO, Robert C DUTCHER, Traci M Tanaka HALL, Phillip D ZAMORE a Andrei A KOROSTELEV. Structural basis of microRNA biogenesis by Dicer-1 and its partner protein Loqs-PB. Molecular Cell. CAMBRIDGE: CELL PRESS, 2022, roč. 82, č. 21, s. "4049"-"+", 22 s. ISSN 1097-2765. Dostupné z: https://dx.doi.org/10.1016/j.molcel.2022.09.002.

DEMO, Gabriel, Ahmed Adel I. H. HASSAN, Pradeep HIRIYUR NAGARAJ, Ludmila VESELÁ, Hassan ZAFAR, Amiyaranjan DAS, Lucie SLÁMOVÁ a Sylva BRABENCOVÁ. THE CLOSE INTERPLAY OF TWO GENE EXPRESSION MACHINERIES. In Czech Chemical Society Symposium Series - Annual meeting of the National Institute of Virology and Bacteriology (NIVB). 2022. ISSN 2336-7210.

HASSAN, Ahmed Adel I. H., Pradeep HIRIYUR NAGARAJ, Adrien CHAUVIER, Nils WALTER a Gabriel DEMO. Translation initiation stages of coupled transcription-translation. In 16th Multinational congress on Microscopy. 2022. ISBN 978-80-11-02253-2.

DEMO, Gabriel, Christine CARBONE, Anna LOVELAND, Egor SVIDRITSKIY, Howard GAMPER, Ya-Ming HOU a Andrei KOROSTELEV. Cryo-EM ensemble captures EF-G mediated ribosomal translocation in action. In XXVI. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology. 2021. ISBN 978-80-907779-1-0.

GHASHGHAEI, O., M. PEDROLA, F. SEGHETTI, V.V. MARTIN, R. ZAVARCE, Michal BABIAK, Jiří NOVÁČEK, F. HARTUNG, K.M. ROLFES, T. HAARMANN-STEMMANN a R. LAVILLA. Extended Multicomponent Reactions with Indole Aldehydes: Access to Unprecedented Polyheterocyclic Scaffolds, Ligands of the Aryl Hydrocarbon Receptor. Angewandte Chemie International Edition. WEINHEIM (GERMANY): Verlag Chemie, 2021, roč. 60, č. 5, s. 2603-2608. ISSN 1433-7851. Dostupné z: https://dx.doi.org/10.1002/anie.202011253.

JURČEK, Ondřej, N. NONAPPA, Elina KALENIUS, Pia Yasmine JURČEK, Juha M. LINNANTO, Rakesh PUTTREDDY, Hennie VALKENIER, Nikolay HOUBENOV, Michal BABIAK, Miroslav PETEREK, Anthony P. DAVIS, Radek MAREK a Kari RISSANEN. Hexagonal Microparticles from Hierarchical Self-Organization of Chiral Trigonal Pd3L6 Macrotetracycles. Cell Reports Physical Science. Cell Press, 2021, roč. 2, č. 1, s. 100303-100321. ISSN 2666-3864. Dostupné z: https://dx.doi.org/10.1016/j.xcrp.2020.100303.

VESELÁ, Ludmila, Hassan ZAFAR, Sylva BRABENCOVÁ, Lucie SLÁMOVÁ a Gabriel DEMO. In vivo fluorescent tracking system of coupled transcription-translation. In XXVI. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology. 2021. ISBN 978-80-907779-1-0.

PODHORSKÝ, Ján, Michal BABIAK, Jiří PINKAS, Corinna HEGEMANN, Sanjay MATHUR a Zdeněk MORAVEC. New mixed-ligand organoaluminum heteroarylalkenolates. Polyhedron. Elsevier, 2021, roč. 194, January, s. "114953", 12 s. ISSN 0277-5387. Dostupné z: https://dx.doi.org/10.1016/j.poly.2020.114953.

MORAVCOVÁ, Jana, Matyáš PINKAS, Radka HOLBOVÁ a Jiří NOVÁČEK. Preparation and Cryo-FIB micromachining of Saccharomyces cerevisiae for Cryo-Electron Tomography. Jove-Journal of Visualized Experiments. CAMBRIDGE: JOURNAL OF VISUALIZED EXPERIMENTS, 2021, NOV, č. 177, s. „e62351“, 16 s. ISSN 1940-087X. Dostupné z: https://dx.doi.org/10.3791/62351.

DEMO, Gabriel, H.B. GAMPER, A.B. LOVELAND, I. MASUDA, C.E. CARBONE, E. SVIDRITSKIY, Y.M. HOU a A.A. KOROSTELEV. Structural basis for+1 ribosomal frameshifting during EF-G-catalyzed translocation. Nature Communications. London: Nature Publishing Group, 2021, roč. 12, č. 1, s. 4644-4655. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-021-24911-1.

CARBONE, C.E., A.B. LOVELAND, H.B. GAMPER, Y.M. HOU, Gabriel DEMO a A.A. KOROSTELEV. Time-resolved cryo-EM visualizes ribosomal translocation with EF-G and GTP. Nature Communications. London: Nature Publishing Group, 2021, roč. 12, č. 1, s. „7236“, 13 s. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-021-27415-0.

HIRIYUR NAGARAJ, Pradeep, Aviram RASOULY, Evgeny NUDLER, Andrei KOROSTELEV a Gabriel DEMO. Transcription-translation coupling at the stages of translation initiation and elongation. In XXVI. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology. 2021. ISBN 978-80-907779-1-0.

CARBONE, C.E., Gabriel DEMO, R. MADIREDDY, E. SVIDRITSKIY a A.A. KOROSTELEV. ArfB can displace mRNA to rescue stalled ribosomes. Nature Communications. London: Nature Publishing Group, 2020, roč. 11, č. 1, s. 5552-5560. ISSN 2041-1723. Dostupné z: https://dx.doi.org/10.1038/s41467-020-19370-z.

LOVELAND, A.B., Gabriel DEMO a A.A. KOROSTELEV. Cryo-EM of elongating ribosome with EF-Tu center dot GTP elucidates tRNA proofreading. Nature. LONDON: NATURE PUBLISHING GROUP, 2020, roč. 584, č. 7822, s. "640"-"+", 24 s. ISSN 0028-0836. Dostupné z: https://dx.doi.org/10.1038/s41586-020-2447-x.

POLOVINKIN, V., K. KHAKUREL, Michal BABIAK, B. ANGELOV, B. SCHNEIDER, J. DOHNALEK, J. ANDREASSON a J. HAJDU. Demonstration of electron diffraction from membrane protein crystals grown in a lipidic mesophase after lamella preparation by focused ion beam milling at cryogenic temperatures. Journal of Applied Crystallography. Chester: INT UNION CRYSTALLOGRAPHY, 2020, roč. 53, DEC, s. 1416-1424. ISSN 0021-8898. Dostupné z: https://dx.doi.org/10.1107/S1600576720013096.

SÝKOROVÁ, Petra, Jitka NOVOTNÁ, Gabriel DEMO, Guillaume POMPIDOR, Eva DUBSKÁ, Jan KOMÁREK, Eva FUJDIAROVÁ, Josef HOUSER, Lucia HÁRONÍKOVÁ, Annabelle VARROT, Nadya SHILOVA, Anne IMBERTY, Nicolai BOVIN, Martina POKORNÁ a Michaela WIMMEROVÁ. Characterization of novel lectins from Burkholderia pseudomallei and Chromobacterium violaceum with seven-bladed beta-propeller fold. International journal of biological macromolecules. Amsterdam: Elsevier Science BV, 2020, roč. 152, JUN, s. 1113-1124. ISSN 0141-8130. Dostupné z: https://dx.doi.org/10.1016/j.ijbiomac.2019.10.200.