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TROJÁK, Matej, David ŠAFRÁNEK, Samuel PASTVA and Luboš BRIM. Rule-based Modelling of Biological Systems Using Regulated Rewriting. Biosystems. Elsevier, 2023, vol. 225, No 104843, p. 1-15. ISSN 0303-2647. Available from: https://dx.doi.org/10.1016/j.biosystems.2023.104843.URL
RIV/00216224:14330/23:00134056 Article in a journal. English. Ireland.
Troják, Matej (703 Slovakia, belonging to the institution) -- Šafránek, David (203 Czech Republic, belonging to the institution) -- Pastva, Samuel (703 Slovakia, belonging to the institution) -- Brim, Luboš (203 Czech Republic, belonging to the institution)
Keywords in English: systems biology; rule-based modelling; regulations; multiset rewriting
International impact: yes
Reviewed: yes
Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 8/4/2024 10:08. -
KALLA, Erik, Hugo SEMRÁD, Miriama MATEÁŠOVÁ and Markéta MUNZAROVÁ. DFT Analysis of Diels-Alder Reactions for the Preparation of Forskolin Derivatives. In 18th Central European Symposium on Theoretical Chemistry, Balatonszárszó, Hungary. 2022.
Name in Czech: DFT analýza Diels-Alderových reakcí pro přípravu forskolinových derivátů
International impact: yes
Changed by: RNDr. Erik Kalla, učo 461019. Changed: 9/9/2022 18:39. -
TROJÁK, Matej, David ŠAFRÁNEK, Branislav BROZMANN and Luboš BRIM. eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems. Online. In I. Petre, A. Păun. 20th International Conference on Computational Methods in Systems Biology. LNBI 13447. Neuveden: Springer, 2022, p. 302-309. ISBN 978-3-031-15033-3. Available from: https://dx.doi.org/10.1007/978-3-031-15034-0_17.URL
RIV/00216224:14330/22:00129141 Proceedings paper. English. Netherlands.
Troják, Matej (703 Slovakia, belonging to the institution) -- Šafránek, David (203 Czech Republic, guarantor, belonging to the institution) -- Brozmann, Branislav (703 Slovakia, belonging to the institution) -- Brim, Luboš (203 Czech Republic, belonging to the institution)
Keywords in English: rule-based modelling; regulations; SBML; Galaxy tool
Type of proceedings: pre-proceedings
International impact: yes
Reviewed: yes
Changed by: prof. RNDr. Luboš Brim, CSc., učo 197. Changed: 6/1/2023 09:59. -
BAKKER, Michael J., Arnošt MLÁDEK, Hugo SEMRÁD, Vojtěch ZAPLETAL and Jana PAVLÍKOVÁ PŘECECHTĚLOVÁ. Improving IDP theoretical chemical shift accuracy and efficiency through a combined MD/ADMA/DFT and machine learning approach. Physical Chemistry Chemical Physics. Royal Society of Chemistry, 2022, vol. 24, No 45, p. 27678-27692. ISSN 1463-9076. Available from: https://dx.doi.org/10.1039/D2CP01638A.URL
RIV/00216224:14310/22:00127220 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
Semrád, Hugo (203 Czech Republic, belonging to the institution) -- Pavlíková Přecechtělová, Jana (guarantor)
Keywords in English: NMR spectroscopy; chemical shift; disordered protein; cluster analysis; optimization in normal modes; molecular dynamics; protein fragmentation; adjustable density matrix assembler; density functional theory; multi-scale modelling
International impact: yes
Reviewed: yes
Changed by: Mgr. Hugo Semrád, Ph.D., učo 375827. Changed: 1/12/2022 15:07. -
TROJÁK, Matej, Helge HECHT, Martin ČECH and Elliott James PRICE. MSMetaEnhancer: A Python package for mass spectra metadata annotation. Journal of Open Source Software. 2022, vol. 7, No 79. Available from: https://dx.doi.org/10.21105/joss.04494.URL
English.
International impact: yes
Reviewed: yes
Changed by: Helge Hecht, M.Sc., učo 473355. Changed: 2/11/2022 16:35. -
HECHT, Helge, Maksym SKORYK, Martin ČECH and Elliott James PRICE. RIAssigner: A package for gas chromatographic retention index calculation. Journal of Open Source Software. Open Journals, 2022, vol. 7, No 75, p. 1-4. ISSN 2475-9066. Available from: https://dx.doi.org/10.21105/joss.04337.Article
Name (in English): RIAssigner: A package for gas chromatographic retention index calculation
RIV: Article in a journal. English. United States of America.
Hecht, Helge (276 Germany, belonging to the institution) -- Skoryk, Maksym (804 Ukraine, belonging to the institution) -- Čech, Martin (203 Czech Republic, belonging to the institution) -- Price, Elliott James (826 United Kingdom of Great Britain and Northern Ireland, belonging to the institution)
Keywords in English: gas chromatography; retention index; analytical chemistry
International impact: yes
Reviewed: yes
Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 24/4/2024 16:34. -
SEMRÁD, Hugo, Ctibor MAZAL and Markéta MUNZAROVÁ. Free Radical Isomerizations in Acetylene Bromoboration Reaction. Molecules. MDPI, 2021, vol. 26, No 9, p. "2501", 15 pp. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules26092501.URL
RIV/00216224:14310/21:00121467 Article in a journal. English. Switzerland.
Semrád, Hugo (203 Czech Republic, belonging to the institution) -- Mazal, Ctibor (203 Czech Republic, belonging to the institution) -- Munzarová, Markéta (203 Czech Republic, guarantor, belonging to the institution)
Keywords in English: free radicals; isomerization; acetylene; bromoboration; mechanism; addition-elimination; DFT; MP2
International impact: yes
Reviewed: yes
Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 28/5/2021 11:20.
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