Your selection contains 18 outcomes. Edit selection.
Filter publications

    2023

    1. Privacy risks of whole-slide image sharing in digital pathology
      HOLUB, Petr, Heimo MÜLLER, Tomáš BÍL, Luca PIREDDU, Markus PLASS, Fabian PRASSER, Irene SCHLÜNDER, Kurt ZATLOUKAL, Rudolf NENUTIL and Tomáš BRÁZDIL. Privacy risks of whole-slide image sharing in digital pathology. Nature Communications. 2023, vol. 14, No 2577, p. 1-15. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-023-37991-y.
      URL
      Name (in English): Privacy risks of whole-slide image sharing in digital pathology
      RIV/00216224:14610/23:00130727 Article in a journal. English. Germany.
      Holub, Petr (203 Czech Republic, guarantor, belonging to the institution) -- Bíl, Tomáš (203 Czech Republic, belonging to the institution) -- Nenutil, Rudolf (203 Czech Republic) -- Brázdil, Tomáš (203 Czech Republic, belonging to the institution)
      Keywords in English: digital pathology; whole slide images; anonymity; privacy risks; data sharing
      Changed by: Mgr. Alena Mokrá, učo 362754. Changed: 5/4/2024 11:00.
      More: https://is.muni.cz/publication/2280138/en
    2. Strategické řízení procesu digitalizace univerzity
      MYSLIVEČEK, Jan and Radim POLČÁK. Strategické řízení procesu digitalizace univerzity. In Digitální transformace univerzit. 2023.
      English. Netherlands.
      Changed by: prof. JUDr. Radim Polčák, Ph.D., učo 21177. Changed: 6/10/2023 20:52.
      More: https://is.muni.cz/publication/2315542/en
    3. xOpat: eXplainable Open Pathology Analysis Tool
      HORÁK, Jiří, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ, Tomáš BRÁZDIL, Petr HOLUB, Martin KAČENGA, Matej GALLO, Rudolf NENUTIL, Jan BYŠKA and Vít RUSŇÁK. xOpat: eXplainable Open Pathology Analysis Tool. COMPUTER GRAPHICS FORUM. England: Wiley, 2023, vol. 42, No 3, p. 63-73. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.14812.
      URL
      Name (in English): xOpat: eXplainable Open Pathology Analysis Tool
      RIV/00216224:14330/23:00130943 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Horák, Jiří (203 Czech Republic, belonging to the institution) -- Furmanová, Katarína (703 Slovakia, belonging to the institution) -- Kozlíková, Barbora (203 Czech Republic, belonging to the institution) -- Brázdil, Tomáš (203 Czech Republic, belonging to the institution) -- Holub, Petr (203 Czech Republic, belonging to the institution) -- Kačenga, Martin (703 Slovakia, belonging to the institution) -- Gallo, Matej (703 Slovakia, belonging to the institution) -- Nenutil, Rudolf (203 Czech Republic) -- Byška, Jan (203 Czech Republic, belonging to the institution) -- Rusňák, Vít (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Medical Imaging; Scientific Visualization; Open Pathology; Toolkit; artificial intelligence; Visual Analysis; AI explainability; GPU Rendering;
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Tomáš Brázdil, Ph.D., učo 4074. Changed: 6/2/2024 21:04.
      More: https://is.muni.cz/publication/2290959/en

    2022

    1. Automated annotations of epithelial cells and stroma in hematoxylin–eosin-stained whole-slide images using cytokeratin re-staining
      BRÁZDIL, Tomáš, Matej GALLO, Rudolf NENUTIL, Andrej KUBANDA, Martin TOUFAR and Petr HOLUB. Automated annotations of epithelial cells and stroma in hematoxylin–eosin-stained whole-slide images using cytokeratin re-staining. The Journal of Pathology: Clinical Research. 2022, vol. 8, No 2, p. 129-142. ISSN 2056-4538. Available from: https://dx.doi.org/10.1002/cjp2.249.
      Wiley Online
      Name (in English): Automated annotations of epithelial cells and stroma in hematoxylin–eosin-stained whole-slide images using cytokeratin re-staining
      RIV/00216224:14330/22:00125032 Article in a journal. English. Czech Republic.
      Brázdil, Tomáš (203 Czech Republic, belonging to the institution) -- Gallo, Matej (703 Slovakia, belonging to the institution) -- Nenutil, Rudolf (203 Czech Republic) -- Kubanda, Andrej (703 Slovakia, belonging to the institution) -- Toufar, Martin (203 Czech Republic) -- Holub, Petr (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: U-Net; artificial intelligence; digital pathology; H&E; immunohistochemistry; deep learning; tissue registration
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Tereza Miškechová, učo 341652. Changed: 10/1/2023 15:02.
      More: https://is.muni.cz/publication/1801217/en
    2. Complexes of NOTA-Monoamides with CuII Ions: Structural, Equilibrium, and Kinetic Study
      KUBINEC, Jan, Viktorie ŠIRŮČKOVÁ, Jana HAVLÍČKOVÁ, Jan KOTEK, Vojtěch KUBÍČEK, Přemysl LUBAL and Petr HERMANN. Complexes of NOTA-Monoamides with CuII Ions: Structural, Equilibrium, and Kinetic Study. European Journal of Inorganic Chemistry. Wiley-VCH GmbH, 2022, vol. 2022, No 19, p. 1-11. ISSN 1434-1948. Available from: https://dx.doi.org/10.1002/ejic.202200173.
      URL
      Name (in English): Complexes of NOTA-Monoamides with CuII Ions: Structural, Equilibrium, and Kinetic Study
      RIV/00216224:14310/22:00125996 Article in a journal. English. Germany.
      Kubinec, Jan (203 Czech Republic) -- Širůčková, Viktorie (203 Czech Republic, belonging to the institution) -- Havlíčková, Jana (203 Czech Republic) -- Kotek, Jan (203 Czech Republic) -- Kubíček, Vojtěch (203 Czech Republic, guarantor) -- Lubal, Přemysl (203 Czech Republic, belonging to the institution) -- Hermann, Petr (203 Czech Republic)
      Keywords in English: Aminopolycarboxylate ligands; Copper; Macrocyclic ligands; Nuclear medicine; Transition metal complexes
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 7/12/2022 14:12.
      More: https://is.muni.cz/publication/1860073/en
    3. On-the-fly Adaptation of Patrolling Strategies in Changing Environments
      BRÁZDIL, Tomáš, David KLAŠKA, Antonín KUČERA, Vít MUSIL, Petr NOVOTNÝ and Vojtěch ŘEHÁK. On-the-fly Adaptation of Patrolling Strategies in Changing Environments. Online. In James Cussens, Kun Zhang. Proceedings of the Thirty-Eighth Conference on Uncertainty in Artificial Intelligence, UAI 2022. Neuveden: Proceedings of Machine Learning Research, 2022, p. 244-254. ISBN 978-1-7138-6329-8.
      Paper URL
      RIV/00216224:14330/22:00127027 Proceedings paper. English.
      Brázdil, Tomáš (203 Czech Republic, belonging to the institution) -- Klaška, David (203 Czech Republic, belonging to the institution) -- Kučera, Antonín (203 Czech Republic, guarantor, belonging to the institution) -- Musil, Vít (203 Czech Republic, belonging to the institution) -- Novotný, Petr (203 Czech Republic, belonging to the institution) -- Řehák, Vojtěch (203 Czech Republic, belonging to the institution)
      Keywords in English: patrolling games; strategy synthesis
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Michal Petr, učo 65024. Changed: 28/8/2024 10:23.
      More: https://is.muni.cz/publication/2227363/en

    2021

    1. Data-driven Learned Metric Index: an Unsupervised Approach
      SLANINÁKOVÁ, Terézia, Matej ANTOL, Jaroslav OĽHA and Vlastislav DOHNAL. Data-driven Learned Metric Index: an Unsupervised Approach. In 14th International Conference on Similarity Search and Applications (SISAP 2021). Cham: Springer, 2021, p. 81-94. ISBN 978-3-030-89656-0. Available from: https://dx.doi.org/10.1007/978-3-030-89657-7_7.
      Name (in English): Data-driven Learned Metric Index: an Unsupervised Approach
      RIV/00216224:14330/21:00119191 Proceedings paper. English. Netherlands.
      Slanináková, Terézia (703 Slovakia, belonging to the institution) -- Antol, Matej (703 Slovakia, belonging to the institution) -- Oľha, Jaroslav (703 Slovakia, belonging to the institution) -- Dohnal, Vlastislav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Index structures; Learned index; Unstructured data; Content-based search; Metric space; Machine learning
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 29/4/2022 08:12.
      More: https://is.muni.cz/publication/1790340/en
    2. Learned metric index - proposition of learned indexing for unstructured data
      ANTOL, Matej, Jaroslav OĽHA, Terézia SLANINÁKOVÁ and Vlastislav DOHNAL. Learned metric index - proposition of learned indexing for unstructured data. Information Systems. Elsevier, 2021, vol. 100, No 101774, p. 1-12. ISSN 0306-4379. Available from: https://dx.doi.org/10.1016/j.is.2021.101774.
      URL
      RIV/00216224:14330/21:00118915 Article in a journal. English. Netherlands.
      Antol, Matej (703 Slovakia, guarantor, belonging to the institution) -- Oľha, Jaroslav (703 Slovakia, belonging to the institution) -- Slanináková, Terézia (703 Slovakia, belonging to the institution) -- Dohnal, Vlastislav (203 Czech Republic, belonging to the institution)
      Keywords in English: Index structures;Learned index;Unstructured data;Content-based search;Metric space
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 28/4/2022 09:52.
      More: https://is.muni.cz/publication/1757938/en
    3. Metric hull as similarity-aware operator for representing unstructured data
      ANTOL, Matej, Miriama JÁNOŠOVÁ and Vlastislav DOHNAL. Metric hull as similarity-aware operator for representing unstructured data. Pattern Recognition Letters. Amsterdam: Elsevier, 2021, vol. 149, September 2021, p. 91-98. ISSN 0167-8655. Available from: https://dx.doi.org/10.1016/j.patrec.2021.05.011.
      URL
      RIV/00216224:14330/21:00121873 Article in a journal. English. Netherlands.
      Antol, Matej (703 Slovakia, belonging to the institution) -- Jánošová, Miriama (703 Slovakia, belonging to the institution) -- Dohnal, Vlastislav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Similarity operators; Metric space; Data aggregation
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Vlastislav Dohnal, Ph.D., učo 2952. Changed: 19/4/2022 12:11.
      More: https://is.muni.cz/publication/1780258/en
    4. 4D-GRAPHS (software)
      BRÁZDIL, Tomáš, David PORTEŠ, Jiří FILIPOVIČ, Jana HOZZOVÁ, Thomas EVANGELIDIS and Konstantinos TRIPSIANES. 4D-GRAPHS. 2021.
      URL
      Name in Czech: 4D-GRAPHS
      RIV/00216224:14330/21:00121312 Software. English. Czech Republic.
      Brázdil, Tomáš (203 Czech Republic, guarantor, belonging to the institution) -- Porteš, David (203 Czech Republic, belonging to the institution) -- Filipovič, Jiří (203 Czech Republic, belonging to the institution) -- Hozzová, Jana (703 Slovakia, belonging to the institution) -- Evangelidis, Thomas (300 Greece, belonging to the institution) -- Tripsianes, Konstantinos (300 Greece, belonging to the institution)
      Keywords in English: NMR; NOESY; assignment
      International impact: yes
      Changed by: doc. RNDr. Jiří Filipovič, Ph.D., učo 72898. Changed: 8/6/2021 15:15.
      More: https://is.muni.cz/publication/1756437/en

    2020

    1. CaverDock: A Novel Method for the Fast Analysis of Ligand Transport
      FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE/ACM Transactions on Computational Biology and Bioinformatics. Los Alamitos: IEEE Computer Society, 2020, vol. 17, No 5, p. 1625-1638. ISSN 1545-5963. Available from: https://dx.doi.org/10.1109/TCBB.2019.2907492.
      URL
      Name in Czech: CaverDock: nová metoda pro rychlou analýzu transportu ligandu
      RIV/00216224:14610/20:00115044 Article in a journal. English. United States of America.
      Filipovič, Jiří (203 Czech Republic, guarantor, belonging to the institution) -- Vávra, Ondřej (203 Czech Republic, belonging to the institution) -- Plhák, Jan (203 Czech Republic, belonging to the institution) -- Bednář, David (203 Czech Republic, belonging to the institution) -- Marques, Sérgio Manuel (620 Portugal, belonging to the institution) -- Brezovský, Jan (203 Czech Republic, belonging to the institution) -- Matyska, Luděk (203 Czech Republic, belonging to the institution) -- Damborský, Jiří (203 Czech Republic, belonging to the institution)
      Keywords in English: molecular docking; tunnel analysis; ligand transport; drug design; numerical optimization; restrained force field; volume discretization
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Michaela Hylsová, Ph.D., učo 211937. Changed: 17/2/2023 20:52.
      More: https://is.muni.cz/publication/1514116/en

    2019

    1. BM-index: Balanced Metric Space Index based on Weighted Voronoi Partitioning
      ANTOL, Matej and Vlastislav DOHNAL. BM-index: Balanced Metric Space Index based on Weighted Voronoi Partitioning. In Lecture Notes in Computer Science. Advances in Databases and Information Systems, 23th East European Conference, ADBIS 2019. LNCS 11695. Cham: Springer International Publishing, 2019, p. 337-353. ISBN 978-3-030-28729-0. Available from: https://dx.doi.org/10.1007/978-3-030-28730-6_21.
      URL
      RIV/00216224:14330/19:00109747 Proceedings paper. English. Netherlands.
      Antol, Matej (703 Slovakia, belonging to the institution) -- Dohnal, Vlastislav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Indexing structure;k-nearest neighbor query;Approximate search;Metric space;Voronoi partitioning
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Vlastislav Dohnal, Ph.D., učo 2952. Changed: 30/9/2020 12:42.
      More: https://is.muni.cz/publication/1534362/en
    2. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels
      VÁVRA, Ondřej, Jiří FILIPOVIČ, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Jan ŠTOURAČ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinformatics. Oxford: Oxford University Press, 2019, vol. 35, No 23, p. 4986-4993. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btz386.
      Full Text
      Name in Czech: CaverDock: na molekulovém dokingu založený nástroj k analýze transportu ligandu skrz tunely a kanály v proteinech
      RIV/00216224:14310/19:00110114 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Vávra, Ondřej (203 Czech Republic, belonging to the institution) -- Filipovič, Jiří (203 Czech Republic, guarantor, belonging to the institution) -- Plhák, Jan (203 Czech Republic, belonging to the institution) -- Bednář, David (203 Czech Republic, belonging to the institution) -- Marques, Sérgio Manuel (620 Portugal, belonging to the institution) -- Brezovský, Jan (203 Czech Republic, belonging to the institution) -- Štourač, Jan (203 Czech Republic, belonging to the institution) -- Matyska, Luděk (203 Czech Republic, belonging to the institution) -- Damborský, Jiří (203 Czech Republic, belonging to the institution)
      Keywords in English: HALOALKANE DEHALOGENASE LINB; ENERGY LANDSCAPE; ACTIVE-SITE; DYNAMICS; MECHANISM; BINDING; RECOGNITION; KINETICS
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Michaela Hylsová, Ph.D., učo 211937. Changed: 15/2/2023 22:12.
      More: https://is.muni.cz/publication/1544936/en

    2018

    1. Common ELIXIR Service for Researcher Authentication and Authorisation
      LINDEN, Mikael, Michal PROCHÁZKA, Ilkka LAPPALAINEN, Dominik František BUČÍK, Pavel VYSKOČIL, Martin KUBA, Sami SILÉN, Peter BELMANN, Alexander SCZYRBA, Steven NEWHOUSE, Luděk MATYSKA and Tommi NYRÖNEN. Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research. F1000 Research Ltd., 2018, vol. 7, No 2018, p. 1-16. ISSN 2046-1402. Available from: https://dx.doi.org/10.12688/f1000research.15161.1.
      URL
      RIV/00216224:14610/18:00108914 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Procházka, Michal (203 Czech Republic, guarantor, belonging to the institution) -- Bučík, Dominik František (703 Slovakia, belonging to the institution) -- Vyskočil, Pavel (203 Czech Republic, belonging to the institution) -- Kuba, Martin (203 Czech Republic, belonging to the institution) -- Matyska, Luděk (203 Czech Republic, belonging to the institution)
      Keywords in English: authentication; authorisation; IAM; data access; GDPR; GA4GH
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Michal Procházka, Ph.D., učo 39700. Changed: 21/4/2020 10:20.
      More: https://is.muni.cz/publication/1463876/en
    2. INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures
      SALOMONI, Davide, Luciano GAIDO, Isabel Campos PLASENCIA, Jesus E Marco de LUCAS, Peter SOLAGNA, Jorge GOMES, Luděk MATYSKA, P FUHRMAN, Marcus HARDT, Giacinto DONVITO, L DUTKA, Marcin Pl o CIENNIK, Roberto BARBERA, Cristina AIFTIMIEI, Ignacio BLANQUER, Andrea CECCANTI, Mario DAVID, Alvaro Lopez GARCIA, German MOLTO, P ORVIZ, Zdeněk SUSTR, M VILJOEN, Fernando AGUILAR, L ALVES, Alexandre BONVING, Riccardo BRUNO, D DAVIDOVIC, Marco FARGETTA, Yen CHEN, Sandro FIORE, Z KURKCUOGLU, L LLORET, J MARTINS, Alessandra NUZZO, Paola NASSISI, J PINA, Eva SCIACCA, Daniele SPIGA, M TANGARO, Michal URBANIAK, Bas WEGH and T ZOK. INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures. Journal of Grid Computing. Springer Science+Business Media B.V., 2018, vol. 16, No 3, p. 381-408. ISSN 1570-7873. Available from: https://dx.doi.org/10.1007/s10723-018-9453-3.
      URL
      Name (in English): INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures

      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Luděk Matyska, CSc., učo 1904. Changed: 29/4/2019 15:05.
      More: https://is.muni.cz/publication/1423795/en
    3. Towards Artificial Priority Queues for Similarity Query Execution
      ANTOL, Matej and Vlastislav DOHNAL. Towards Artificial Priority Queues for Similarity Query Execution. Online. In 2018 IEEE 34th International Conference on Data Engineering Workshops (ICDEW). Paris, France: IEEE, 2018, p. 78-83. ISBN 978-1-5386-6306-6. Available from: https://dx.doi.org/10.1109/ICDEW.2018.00020.
      URL
      Name (in English): Towards Artificial Priority Queues for Similarity Query Execution
      RIV/00216224:14330/18:00101035 Proceedings paper. English. Czech Republic.
      Antol, Matej (703 Slovakia, belonging to the institution) -- Dohnal, Vlastislav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: similarity search;index structure;knn algorithm evaluation;query processing optimization;metric space
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 13/5/2020 19:16.
      More: https://is.muni.cz/publication/1422496/en

    2017

    1. CaverDock 1.0 (software)
      FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock 1.0. 2017.
      URL
      Name in Czech: CaverDock 1.0
      Name (in English): CaverDock 1.0
      RIV/00216224:14610/17:00098438 Software. Informatics. English. Czech Republic.
      Filipovič, Jiří (203 Czech Republic, belonging to the institution) -- Vávra, Ondřej (203 Czech Republic, belonging to the institution) -- Plhák, Jan (203 Czech Republic, belonging to the institution) -- Bednář, David (203 Czech Republic, belonging to the institution) -- Marques, Sérgio Manuel (620 Portugal, belonging to the institution) -- Brezovský, Jan (203 Czech Republic, belonging to the institution) -- Matyska, Luděk (203 Czech Republic, belonging to the institution) -- Damborský, Jiří (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: CaverDock;transport processes in proteins
      International impact: yes
      Changed by: prof. Mgr. Jiří Damborský, Dr., učo 1441. Changed: 1/3/2019 11:24.
      More: https://is.muni.cz/publication/1396336/en
    2. Popularity-Based Ranking for Fast Approximate kNN Search
      ANTOL, Matej and Vlastislav DOHNAL. Popularity-Based Ranking for Fast Approximate kNN Search. Informatica. Lithuanian Academy of Sciences, 2017, vol. 28, No 1, p. 1-21. ISSN 0868-4952. Available from: https://dx.doi.org/10.15388/Informatica.2017.118.
      URL
      RIV/00216224:14330/17:00094704 Article in a journal. Informatics. English. Netherlands.
      Antol, Matej (703 Slovakia, belonging to the institution) -- Dohnal, Vlastislav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: kNN query;approximate search;query popularity;index structure;metric space
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Vlastislav Dohnal, Ph.D., učo 2952. Changed: 29/6/2020 12:54.
      More: https://is.muni.cz/publication/1377613/en
Displayed: 26/11/2024 13:52