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    2017

    1. JANKŮJOVÁ, Marie, David POTĚŠIL, Zbyněk ZDRÁHAL, Martin DEMKO, Jan OPPELT, Martin KAŠNÝ and Jaroslav VADLEJCH. Analysis of gene expression and protein synthesis related to hypobiosis of Teladorsagia circumcincta. In The 26th International Conference of the World Association for the Advancement of Veterinary Parasitology. 2017.
      URL
      Name (in English): Analysis of gene expression and protein synthesis related to hypobiosis of Teladorsagia circumcincta

      Keywords in English: Hypobiosis; Teladorsagia; dauer larva; Caenorhabditis elegans; LC-MS/MS; RNA microarray
      International impact: yes

      Changed by: Mgr. Jan Oppelt, Ph.D., učo 323639. Changed: 18/9/2017 16:11.
    2. KOČKOVÁ, Helena, Karla PLEVOVÁ, Jitka MALČÍKOVÁ, Jana KOTAŠKOVÁ, Vojtěch BYSTRÝ, Veronika MANČÍKOVÁ, Martin TRBUŠEK, Michaela HLOŽKOVÁ, Yvona BRYCHTOVÁ, Michael DOUBEK and Šárka POSPÍŠILOVÁ. B cell receptor signaling actvity is associated with genomic defects in chronic lymphocytic leukemia. In CEITEC PHD RETREAT II. 2017.
      Name (in English): B cell receptor signaling actvity is associated with genomic defects in chronic lymphocytic leukemia
      RIV/00216224:14740/17:00096943 Conference abstract. English.
      Kočková, Helena (203 Czech Republic, belonging to the institution) -- Plevová, Karla (203 Czech Republic, belonging to the institution) -- Malčíková, Jitka (203 Czech Republic, belonging to the institution) -- Kotašková, Jana (203 Czech Republic, belonging to the institution) -- Bystrý, Vojtěch (203 Czech Republic, belonging to the institution) -- Mančíková, Veronika (703 Slovakia, belonging to the institution) -- Trbušek, Martin (203 Czech Republic, belonging to the institution) -- Hložková, Michaela (203 Czech Republic, belonging to the institution) -- Brychtová, Yvona (203 Czech Republic, belonging to the institution) -- Doubek, Michael (203 Czech Republic, belonging to the institution) -- Pospíšilová, Šárka (203 Czech Republic, belonging to the institution)
      Keywords in English: CLL; receptor; genomic defects

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 17/5/2018 13:58.
    3. OLBERTOVÁ, Helena, Karla PLEVOVÁ, Jitka MALČÍKOVÁ, Jana KOTAŠKOVÁ, Vojtěch BYSTRÝ, Veronika MANČÍKOVÁ, Tomáš LOJA, Martin TRBUŠEK, Michaela ŠPUNAROVÁ, Yvona BRYCHTOVÁ, Michael DOUBEK and Šárka POSPÍŠILOVÁ. B cell receptor signaling actvity is associated with genomic defects in chronic lymphocytic leukemia. In Nucleic Acids and Immunity. 2017.
      Name (in English): B cell receptor signaling actvity is associated with genomic defects in chronic lymphocytic leukemia
      English.
      Keywords in English: B cell; CLL; activity

      Changed by: Bc. Kateřina Kolesová, učo 112275. Changed: 14/2/2018 14:15.
    4. HYNŠT, Jakub, Karla PLEVOVÁ, Vojtěch BYSTRÝ, Lenka RADOVÁ and Šárka POSPÍŠILOVÁ. Bioinformatical analysis of chromosomal rearrangement in chromothripsis event using whole transcriptome sequencing data. In Curie-Pasteur-CEITEC joint young scientist retreat. 2017.
      Changed by: Bc. Kateřina Kolesová, učo 112275. Changed: 25/1/2018 20:19.
    5. HORSKÝ, Vladimír, Veronika BENDOVÁ, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. Biomacromolecular structure quality – improvement or stagnation? In CEITEC PhD Retreat II. 2017. ISBN 978-80-210-8551-0.
      URL
      Macromolecular chemistry. English. Czech Republic.
      Keywords in English: ValTrendsDB; ValidatorDB; biomacromolecule structure quality; ligand quality; X-ray crystallography; Protein Data Bank; Validation Report; trends; interval analysis; Spearman coefficient
      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: doc. RNDr. Radka Svobodová, Ph.D., učo 4056. Changed: 14/3/2018 11:11.
    6. RAČEK, Tomáš, Dan POLANSKÝ, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. bio.tools Sum. In ELIXIR CZ Annual Conference 2017. 2017. ISBN 978-80-86241-57-9.
      Computer hardware and software. English. Czech Republic.
      Keywords in English: ELIXIR; bio.tools; summary; report generation; citations; tools; databases; publications

      Changed by: RNDr. Tomáš Raček, Ph.D., učo 324965. Changed: 14/6/2018 10:44.
    7. STEJSKALOVA, Karla, Zuzana BAYEROVÁ, Ján FUTAS, Kristýna HRAZDILOVÁ, Marie KLUMPLEROVÁ, Jan OPPELT, Petra SPLICHALOVA, Giovanni Di GUARDO, Sandro MAZZARIOL, Cristina Esmeralda Di FRANCESCO, Gabriella Di FRANCESCO, Giuliana TERRACCIANO, Romulus-Marian PAIU, Teodor Dan URSACHE, David MODRY and Petr HOŘÍN. Candidate gene molecular markers as tools for analyzing genetic susceptibility to Morbillivirus infection in stranded Cetaceans. HLA. 2017, vol. 90, No 6, p. 343-353. ISSN 2059-2302. Available from: https://dx.doi.org/10.1111/tan.13146.
      URL
      RIV/00216224:14740/17:00097652 Article in a journal. Genetics and molecular biology. English. United States of America.
      Stejskalova, Karla (203 Czech Republic) -- Bayerová, Zuzana (203 Czech Republic) -- Futas, Ján (703 Slovakia) -- Hrazdilová, Kristýna (203 Czech Republic) -- Klumplerová, Marie (203 Czech Republic) -- Oppelt, Jan (203 Czech Republic, guarantor, belonging to the institution) -- Splichalova, Petra (203 Czech Republic) -- Guardo, Giovanni Di (380 Italy) -- Mazzariol, Sandro (380 Italy) -- Francesco, Cristina Esmeralda Di (380 Italy) -- Francesco, Gabriella Di (380 Italy) -- Terracciano, Giuliana (380 Italy) -- Paiu, Romulus-Marian (380 Italy) -- Ursache, Teodor Dan (380 Italy) -- Modry, David (203 Czech Republic) -- Hořín, Petr (203 Czech Republic)
      Keywords in English: Cetacea; Immunity; innate; Haplotype; MHC-DQB; Phocoena phocoena; Polymorphism; single nucleotide; Stenella coeruleoalba
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 17/5/2018 14:05.
    8. PLEVOVÁ, Karla, Jakub HYNŠT, Vojtěch BYSTRÝ, Jitka MALČÍKOVÁ, Karol PÁL, T. RAUSCH, V. BENEŠ, Michael DOUBEK and Šárka POSPÍŠILOVÁ. Complex genome rearrangements are associated with altered gene expression in chronic lymphocytic leukemia. In EMBO Basel Life. 2017.
      Name (in English): Complex genome rearrangements are associated with altered gene expression in chronic lymphocytic leukemia.
      RIV/00216224:14740/17:00106915 Conference abstract. English.
      Plevová, Karla (203 Czech Republic, belonging to the institution) -- Hynšt, Jakub (203 Czech Republic, belonging to the institution) -- Bystrý, Vojtěch (203 Czech Republic, belonging to the institution) -- Malčíková, Jitka (203 Czech Republic, belonging to the institution) -- Pál, Karol (703 Slovakia, belonging to the institution) -- Rausch, T. (276 Germany) -- Beneš, V. (276 Germany) -- Doubek, Michael (203 Czech Republic, belonging to the institution) -- Pospíšilová, Šárka (203 Czech Republic, belonging to the institution)
      Keywords in English: genome; expression; CLL

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 17/5/2018 14:13.
    9. SUCHÁNKOVÁ, Pavla and Radka SVOBODOVÁ VAŘEKOVÁ. Connection of saccharide database UnicarbKb with common databases of molecular structures. In XVIII. setkání biochemiků a molekulárních biologů, 2017. 2017. ISBN 978-80-210-8765-1.
      RIV/00216224:14740/17:00108802 Conference abstract. English. Czech Republic.
      Suchánková, Pavla (203 Czech Republic, guarantor, belonging to the institution) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution)
      Keywords in English: glycan; GlycoCT; InChI; InChIKey; PDB; PubChem; UnicarbKB

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 26/3/2020 16:46.
    10. VOREL, Jiří, Marie JANKŮJOVÁ, Jan OPPELT, Filip PARDY, Pavel ROUDNICKÝ, Jana ILGOVÁ, Hana DVOŘÁKOVÁ, Lucie JEDLIČKOVÁ, Libor MIKEŠ, Dagmar JIRSOVÁ, Božena KOUBKOVÁ, Milan GELNAR and Martin KAŠNÝ. Could nanopore sequencing help us improve genome assembly of Eudiplozoon nipponicum (Polyopisthocotylea, Diplozoidae)? In 6th ECIP meeting - European Centre of Ichtyoparasitology. 2017. ISBN 978-80-210-8799-6.
      URL
      RIV/00216224:14310/17:00095265 Presentations at conferences. Zoology. English. Czech Republic.
      Vorel, Jiří (203 Czech Republic, belonging to the institution) -- Jankůjová, Marie (203 Czech Republic) -- Oppelt, Jan (203 Czech Republic) -- Pardy, Filip (203 Czech Republic) -- Roudnický, Pavel (203 Czech Republic) -- Ilgová, Jana (703 Slovakia) -- Dvořáková, Hana (203 Czech Republic) -- Jedličková, Lucie (203 Czech Republic) -- Mikeš, Libor (203 Czech Republic) -- Jirsová, Dagmar (203 Czech Republic) -- Koubková, Božena (203 Czech Republic) -- Gelnar, Milan (203 Czech Republic) -- Kašný, Martin (203 Czech Republic, guarantor)
      Keywords in English: NGS; nanopore; Monogenea; Eudiplozoon; nipponicum; genome
      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: Mgr. Jiří Vorel, Ph.D., učo 376321. Changed: 13/12/2017 14:53.
    11. MIDLIK, Adam, Radka SVOBODOVÁ VAŘEKOVÁ, Veronika NAVRÁTILOVÁ, Karel BERKA and Jaroslav KOČA. Cytochrome P450 structure anatomy – recognition and analysis of secondary structure elements. In ISMB/ECCB, Prague. 2017.
      URL
      English. Czech Republic.
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: Mgr. et Mgr. Adam Midlik, Ph.D., učo 379962. Changed: 22/1/2020 13:41.
    12. BRIM, Luboš, Jiří BARNAT, David ŠAFRÁNEK, Nikola BENEŠ, Martin DEMKO, Samuel PASTVA and Matej HAJNAL. Detecting Attractors in Biological Models with Uncertain Parameters. In Jérôme Feret and Heinz Koeppl. Computational Methods in Systems Biology. CMSB 2017. LNCS 10545. Cham: Springer International Publishing, 2017, p. 40-56. ISBN 978-3-319-67470-4. Available from: https://dx.doi.org/10.1007/978-3-319-67471-1_3.
      Name (in English): Detecting Attractors in Biological Models with Uncertain Parameters
      RIV/00216224:14330/17:00094899 Proceedings paper. Informatics. English. Czech Republic.
      Brim, Luboš (203 Czech Republic, guarantor, belonging to the institution) -- Barnat, Jiří (203 Czech Republic, belonging to the institution) -- Šafránek, David (203 Czech Republic, belonging to the institution) -- Beneš, Nikola (203 Czech Republic, belonging to the institution) -- Demko, Martin (703 Slovakia, belonging to the institution) -- Pastva, Samuel (703 Slovakia, belonging to the institution) -- Hajnal, Matej (703 Slovakia, belonging to the institution)
      Keywords in English: model checking; systems biology; Computational Tree Logic; dynamical systems; distributed algorithms;
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes

      Changed by: doc. RNDr. David Šafránek, Ph.D., učo 3159. Changed: 13/5/2021 13:12.
    13. BENEŠ, Nikola, Luboš BRIM, Martin DEMKO, Matej HAJNAL, Samuel PASTVA and David ŠAFRÁNEK. Discrete Bifurcation Analysis with Pithya. In Feret J. et al. 15th International Conference on Computational Methods in Systems Biology (CMSB). LNCS 10545. Cham: Springer, 2017, p. 319-320. ISBN 978-3-319-67470-4.
      Name (in English): Discrete Bifurcation Analysis with Pithya
      RIV/00216224:14330/17:00114985 Proceedings paper. Informatics. English.
      Beneš, Nikola (203 Czech Republic, belonging to the institution) -- Brim, Luboš (203 Czech Republic, belonging to the institution) -- Demko, Martin (703 Slovakia, belonging to the institution) -- Hajnal, Matej (703 Slovakia, belonging to the institution) -- Pastva, Samuel (703 Slovakia, belonging to the institution) -- Šafránek, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: bifurcation analysis; model checking; systems biology; terminal strongly connected components; parameter synthesis; parallel algorithms
      International impact: yes
      Reviewed: yes

      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 13/5/2021 17:30.
    14. RŮŽIČKA, Michal, Petr KULHÁNEK, Lenka RADOVÁ, Andrea ČECHOVÁ, Naděžda ŠPAČKOVÁ, Lenka FAJKUSOVÁ and Kamila RÉBLOVÁ. DNA mutation motifs in the genes associated with inherited diseases. Plos one. San Francisco: Public Library of Science, 2017, vol. 12, No 8, p. nestránkováno, 16 pp. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0182377.
      URL
      RIV/00216224:14740/17:00095121 Article in a journal. Genetics and molecular biology. English. United States of America.
      Růžička, Michal (203 Czech Republic, belonging to the institution) -- Kulhánek, Petr (203 Czech Republic, belonging to the institution) -- Radová, Lenka (203 Czech Republic, belonging to the institution) -- Čechová, Andrea (203 Czech Republic, belonging to the institution) -- Špačková, Naděžda (203 Czech Republic, belonging to the institution) -- Fajkusová, Lenka (203 Czech Republic, belonging to the institution) -- Réblová, Kamila (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: REPAIR PROTEIN MUTS; MISMATCH REPAIR; STRAND ASYMMETRIES; CONFORMATIONAL-CHANGES; BENDING PROPENSITY; METHYLATION; RECOGNITION; MECHANISMS; HOTSPOTS; COMPLEX

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 1/3/2018 14:02.
    15. HORSKÝ, Vladimír, Veronika BENDOVÁ, Radka SVOBODOVÁ VAŘEKOVÁ, Sameer VELANKAR and Jaroslav KOČA. Do trends in biomacromolecular structure quality inspire optimism? In 25th Conference on Intelligent Systems for Molecular Biology (ISMB) / 16th Conference on European Conference on Computational Biology (ECCB) 2017. 2017.
      URL
      Macromolecular chemistry. English. United States of America.
      Keywords in English: ValTrendsDB; ValidatorDB; biomacromolecule structure quality; ligand quality; X-ray crystallography; Protein Data Bank; Validation Report; trends; interval analysis; Spearman coefficient
      International impact: yes

      Changed by: doc. RNDr. Radka Svobodová, Ph.D., učo 4056. Changed: 14/3/2018 11:11.
    16. REIGL, Tomáš, Vojtěch BYSTRÝ, Adam KREJČÍ, Kamila BRÁZDILOVÁ, Karla PLEVOVÁ, Šárka POSPÍŠILOVÁ and Nikos DARZENTAS. Encyclopedia of CLL subsets – nový bioinformatický nástroj a unikátní databáze pro výzkum a klinické využití subsetů stereotypních B buněčných receptorů chronické lymfocytární leukemie (Encyclopedia of CLL subsets - a new bioinformatics tool and a unique database for research and clinical use of subsets of stereotypic B cell receptors for chronic lymphocytic leukemia). In XLI. brněnské onkologické dny. 2017.
      Name (in English): Encyclopedia of CLL subsets - a new bioinformatics tool and a unique database for research and clinical use of subsets of stereotypic B cell receptors for chronic lymphocytic leukemia
      RIV/00216224:14740/17:00106904 Conference abstract. Oncology and haematology. English.
      Reigl, Tomáš (203 Czech Republic, belonging to the institution) -- Bystrý, Vojtěch (203 Czech Republic, belonging to the institution) -- Krejčí, Adam (203 Czech Republic, belonging to the institution) -- Brázdilová, Kamila (203 Czech Republic, belonging to the institution) -- Plevová, Karla (203 Czech Republic, belonging to the institution) -- Pospíšilová, Šárka (203 Czech Republic, belonging to the institution) -- Darzentas, Nikos (300 Greece, belonging to the institution)
      Keywords in English: CLL; databáze

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 16/5/2018 10:48.
    17. KIRMZIS, Antonis, Diego MOLINA-SERRANO, Vassia SCHIZA, Christis DEMOSTHENOUS, Jan OPPELT, Wei LIU, Gertrude ZISSE, Helmut BERGLER and Weiwei DANG. Epigenetic Control Of Aging In Response To Caloric Restriction. In 28th International Conference on Yeast Genetics and Molecular Biology (ICYGMB). 2017.
      URL
      Name in Czech: Epigenetická kontrola strárnutí v reakci na omezení kalorií
      Name (in English): Epigenetic Control Of Aging In Response To Caloric Restriction
      Genetics and molecular biology. English.
      International impact: yes

      Changed by: Mgr. Jan Oppelt, Ph.D., učo 323639. Changed: 7/9/2017 08:48.
    18. VOREL, Jiří, Pavel ROUDNICKÝ, Jana ILGOVÁ, Hana DVOŘÁKOVÁ, Lucie JEDLIČKOVÁ, Libor MIKEŠ, Petr BROŽ, Dagmar JIRSOVÁ, Roman LEONTOVYČ, Lukáš VETEŠNÍK, Pavel JURAJDA, Marie JANKŮJOVÁ, Jan OPPELT, Božena KOUBKOVÁ, Milan GELNAR and Martin KAŠNÝ. Eudiplozoon nipponicum (Monogenea: Diplozoidae): Comparative study of transcriptome and secretome of fish parasite. In 23rd Helminthological Days. 2017. ISBN 978-80-968473-8-9.
      Programme & Abstracts
      RIV/00216224:14310/17:00094742 Conference abstract. Zoology. English. Slovakia.
      Vorel, Jiří (203 Czech Republic, guarantor, belonging to the institution) -- Roudnický, Pavel (203 Czech Republic, belonging to the institution) -- Ilgová, Jana (703 Slovakia, belonging to the institution) -- Dvořáková, Hana (203 Czech Republic) -- Jedličková, Lucie (203 Czech Republic) -- Mikeš, Libor (203 Czech Republic) -- Brož, Petr (203 Czech Republic) -- Jirsová, Dagmar (203 Czech Republic) -- Leontovyč, Roman (203 Czech Republic) -- Vetešník, Lukáš (203 Czech Republic) -- Jurajda, Pavel (203 Czech Republic) -- Jankůjová, Marie (203 Czech Republic) -- Oppelt, Jan (203 Czech Republic) -- Koubková, Božena (203 Czech Republic) -- Gelnar, Milan (203 Czech Republic) -- Kašný, Martin (203 Czech Republic)
      Keywords in English: Sequencing; transcriptomics; helminths; Eudiplozoon nipponicum; Monogenea
      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: Mgr. Jiří Vorel, Ph.D., učo 376321. Changed: 26/5/2017 18:38.
    19. VOREL, Jiří, Pavel ROUDNICKÝ, Jana ILGOVÁ, Hana DVOŘÁKOVÁ, Lucie JEDLIČKOVÁ, Libor MIKEŠ, Petr BROŽ, Dagmar JIRSOVÁ, Roman LEONTOVYČ, Lukáš VETEŠNÍK, Pavel JURAJDA, Marie JANKŮJOVÁ, Jan OPPELT, Božena KOUBKOVÁ, Milan GELNAR and Martin KAŠNÝ. Eudiplozoon nipponicum (Polyopisthocotylea: Diplozoidae): transcriptome and secretome analyses of hematophagous fish parasite. In 8th International Symposium on Monogenea. 2017. ISBN 978-80-210-8666-1.
      ECIP - European Centre of IchthyoParasitology
      RIV/00216224:14310/17:00094901 Conference abstract. Zoology. English. Czech Republic.
      Vorel, Jiří (203 Czech Republic, guarantor, belonging to the institution) -- Roudnický, Pavel (203 Czech Republic, belonging to the institution) -- Ilgová, Jana (703 Slovakia, belonging to the institution) -- Dvořáková, Hana (203 Czech Republic) -- Jedličková, Lucie (203 Czech Republic) -- Mikeš, Libor (203 Czech Republic) -- Brož, Petr (203 Czech Republic) -- Jirsová, Dagmar (203 Czech Republic) -- Leontovyč, Roman (203 Czech Republic) -- Vetešník, Lukáš (203 Czech Republic) -- Jurajda, Pavel (203 Czech Republic) -- Jankůjová, Marie (203 Czech Republic) -- Oppelt, Jan (203 Czech Republic) -- Koubková, Božena (203 Czech Republic) -- Gelnar, Milan (203 Czech Republic) -- Kašný, Martin (203 Czech Republic)
      Keywords in English: Sequencing; transcriptomics; helminths; Eudiplozoon nipponicum; Monogenea
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: Mgr. Jiří Vorel, Ph.D., učo 376321. Changed: 28/8/2017 09:55.
    20. HORSKÝ, Vladimír, Veronika BENDOVÁ, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. Exploring Trends in Quality of Biomacromolecular Structure Data. In ELIXIR CZ Annual Conference 2017. 2017. ISBN 978-80-86241-57-9.
      RIV/00216224:14740/17:00108766 Conference abstract. Macromolecular chemistry. English. Czech Republic.
      Horský, Vladimír (203 Czech Republic, guarantor, belonging to the institution) -- Bendová, Veronika (203 Czech Republic, belonging to the institution) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution) -- Koča, Jaroslav (203 Czech Republic, belonging to the institution)
      Keywords in English: ValTrendsDB; ValidatorDB; biomacromolecule structure quality; ligand quality; X-ray crystallography; Protein Data Bank; Validation Report; trends; interval analysis; Spearman coefficient

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 26/3/2020 20:57.
    21. SLANÝ, Michal, Jan OPPELT and Lenka ČINČÁROVÁ. Formation of Staphylococcus aureus biofilm in the presence of sub-lethal concentrations of disinfectants: a transcriptomic analysis using RNA-seq. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, 2017, vol. 83, No 24, p. nestránkováno, 13 pp. ISSN 0099-2240. Available from: https://dx.doi.org/10.1128/AEM.01643-17.
      URL
      Name (in English): Formation of Staphylococcus aureus biofilm in the presence of sub-lethal concentrations of disinfectants: a transcriptomic analysis using RNA-seq
      RIV/00216224:14740/17:00098003 Article in a journal. English. United States of America.
      Slaný, Michal (203 Czech Republic) -- Oppelt, Jan (203 Czech Republic, guarantor, belonging to the institution) -- Činčárová, Lenka (203 Czech Republic)
      Keywords in English: STRESS RESISTANCE; QUALITY-CONTROL; EXPRESSION; BIOCONDUCTOR; PREVALENCE; REGULATORS; STRATEGIES; VIRULENCE; CATALASE; SAMPLES
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 17/5/2018 14:09.
    22. JIMÉNEZ, Rafael C, Mateusz KUZAK, Monther ALHAMDOOSH, Michelle BARKER, Bérénice BATUT, Mikael BORG, Salvador CAPELLA-GUTIERREZ, Neil Chue HONG, Martin COOK, Manuel CORPAS, Madison FLANNERY, Leyla GARCIA, Josep Ll GELPÍ, Simon GLADMAN, Carole GOBLE, Montserrat González FERREIRO, Alejandra GONZALEZ-BELTRAN, Philippa C GRIFFIN, Björn GRÜNING, Jonas HAGBERG, Petr HOLUB, Rob HOOFT, Jon ISON, Daniel S KATZ, Brane LESKOŠEK, Federico López GÓMEZ, Luis J OLIVEIRA, David MELLOR, Rowland MOSBERGEN, Nicola MULDER, Yasset PEREZ-RIVEROL, Robert PERGL, Horst PICHLER, Bernard POPE, Ferran SANZ, Maria V SCHNEIDER, Victoria STODDEN, Radosław SUCHECKI, Radka SVOBODOVÁ VAŘEKOVÁ, Harry-Anton TALVIK, Ilian TODOROV, Andrew TRELOAR, Sonika TYAGI, Maarten van GOMPEL, Daniel VAUGHAN, Allegra VIA, Xiaochuan WANG, Nathan S WATSON-HAIGH and Crouch STEVE. Four simple recommendations to encourage best practices in research software. F1000Research. 2017, vol. 6, JUN, p. 876-888. ISSN 2046-1402. Available from: https://dx.doi.org/10.12688/f1000research.11407.1.
      URL
      Name (in English): Four simple recommendations to encourage best practices in research software
      RIV/00216224:14740/17:00120331 Article in a journal. Informatics. English. United Kingdom of Great Britain and Northern Ireland.
      Holub, Petr (203 Czech Republic) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution)
      Keywords in English: Open Source; code; software; guidelines; best practices; recommendations; Open Science; quality; sustainability; FAIR
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 5/5/2022 16:08.
    23. PECIMONOVA, Martina, Emil POLAK, Frantisek CSICSAY, Kamila RÉBLOVÁ, Maja STOJILJKOVIC, Zdenko LEVARSKI, Ludovit SKULTETY, Ludevit KADASI and Andrea SOLTYSOVA. Functional and structural characterisation of 5 missense mutations of the phenylalanine hydroxylase. General physiology and biophysics. BRATISLAVA: General Physiol and Biophysic, 2017, vol. 36, No 4, p. 361-371. ISSN 0231-5882. Available from: https://dx.doi.org/10.4149/gpb_2017003.
      URL
      RIV/00216224:14740/17:00098089 Article in a journal. Biochemistry. English. Slovakia.
      Pecimonova, Martina (703 Slovakia) -- Polak, Emil (703 Slovakia) -- Csicsay, Frantisek (703 Slovakia) -- Réblová, Kamila (203 Czech Republic, guarantor, belonging to the institution) -- Stojiljkovic, Maja (688 Serbia) -- Levarski, Zdenko (703 Slovakia) -- Skultety, Ludovit (703 Slovakia) -- Kadasi, Ludevit (703 Slovakia) -- Soltysova, Andrea (703 Slovakia)
      Keywords in English: PAH mutations; Phenylketonuria; Specific activity; Chaperons; Functional study

      Changed by: Mgr. Eva Špillingová, učo 110713. Changed: 30/10/2017 15:45.
    24. GLASS (software)
      PÁL, Karol, Vojtěch BYSTRÝ, Tomáš REIGL, Martin DEMKO, Adam KREJČÍ, T. TOULOUMENIDOU, E. STALIKA, Boris TICHÝ, P. GHIA, K. STAMATOPOULOS, Šárka POSPÍŠILOVÁ, Jitka MALČÍKOVÁ and Nikos DARZENTAS. GLASS. 2017.
      zdrojovy kod
      Name in Czech: GLASS
      Name (in English): GLASS
      RIV/00216224:14740/17:00094448 Software. English. Czech Republic.
      Pál, Karol (703 Slovakia, belonging to the institution) -- Bystrý, Vojtěch (203 Czech Republic, belonging to the institution) -- Reigl, Tomáš (203 Czech Republic, belonging to the institution) -- Demko, Martin (703 Slovakia, belonging to the institution) -- Krejčí, Adam (203 Czech Republic, belonging to the institution) -- Touloumenidou, T. (300 Greece) -- Stalika, E. (300 Greece) -- Tichý, Boris (203 Czech Republic) -- Ghia, P. (380 Italy) -- Stamatopoulos, K. (300 Greece) -- Pospíšilová, Šárka (203 Czech Republic) -- Malčíková, Jitka (203 Czech Republic) -- Darzentas, Nikos (300 Greece)
      Keywords in English: Sanger sequencing data; GLASS

      Changed by: Mgr. Karol Pál, Ph.D., učo 173390. Changed: 19/3/2018 12:07.
    25. PÁL, Karol, Vojtěch BYSTRÝ, Tomáš REIGL, Martin DEMKO, Adam KREJČÍ, T. TOULOUMENIDOU, E. STALIKA, Boris TICHÝ, P. GHIA, K. STAMATOPOULOS, Šárka POSPÍŠILOVÁ, Jitka MALČÍKOVÁ and Nikos DARZENTAS. GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data. Bioinformatics. Oxford: Oxford University Press, 2017, vol. 33, No 23, p. 3802-3804. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btx423.
      URL
      RIV/00216224:14740/17:00094417 Article in a journal. Biotechnology and bionics. English. United Kingdom of Great Britain and Northern Ireland.
      Pál, Karol (703 Slovakia, belonging to the institution) -- Bystrý, Vojtěch (203 Czech Republic, belonging to the institution) -- Reigl, Tomáš (203 Czech Republic, belonging to the institution) -- Demko, Martin (703 Slovakia, belonging to the institution) -- Krejčí, Adam (203 Czech Republic, belonging to the institution) -- Touloumenidou, T. (300 Greece) -- Stalika, E. (300 Greece) -- Tichý, Boris (203 Czech Republic, belonging to the institution) -- Ghia, P. (380 Italy) -- Stamatopoulos, K. (300 Greece) -- Pospíšilová, Šárka (203 Czech Republic, guarantor, belonging to the institution) -- Malčíková, Jitka (203 Czech Republic, belonging to the institution) -- Darzentas, Nikos (300 Greece, belonging to the institution)
      Keywords in English: Sanger sequencing data; GLASS
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Karol Pál, Ph.D., učo 173390. Changed: 19/3/2018 12:24.
    26. PÁL, Karol, Vojtěch BYSTRÝ, Tomáš REIGL, Martin DEMKO, Adam KREJČÍ, Boris TICHÝ, Šárka POSPÍŠILOVÁ, Jitka MALČÍKOVÁ and Nikos DARZENTAS. GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data. In CEITEC PHD RETREAT II, Telč. 2017.
      Name (in English): GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data.
      RIV/00216224:14740/17:00097042 Conference abstract. English. Czech Republic.
      Pál, Karol (703 Slovakia, belonging to the institution) -- Bystrý, Vojtěch (203 Czech Republic, belonging to the institution) -- Reigl, Tomáš (203 Czech Republic, belonging to the institution) -- Demko, Martin (703 Slovakia, belonging to the institution) -- Krejčí, Adam (203 Czech Republic, belonging to the institution) -- Tichý, Boris (203 Czech Republic, belonging to the institution) -- Pospíšilová, Šárka (203 Czech Republic, belonging to the institution) -- Malčíková, Jitka (203 Czech Republic, belonging to the institution) -- Darzentas, Nikos (300 Greece, belonging to the institution)
      Keywords in English: gene variations; data; GLASS

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 17/5/2018 13:59.
    27. PÁL, Karol, Vojtěch BYSTRÝ, Tomáš REIGL, Martin DEMKO, Adam KREJČÍ, Boris TICHÝ, Šárka POSPÍŠILOVÁ, Jitka MALČÍKOVÁ and Nikos DARZENTAS. GLASS:assisted and standardized assessment of gene variations from Sanger sequence trace data. (GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data.). In Curie-Pasteur-CEITEC joint young scientist retreat. 2017.
      Name (in English): GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data.
      English.
      Keywords in English: assessment; Sanger sequence

      Changed by: Bc. Kateřina Kolesová, učo 112275. Changed: 14/2/2018 14:24.
    28. ROY, A., Vojtěch BYSTRÝ, G. BOHN, K. GOUDEVENOU, Tomáš REIGL, M. PAPAIOANNOU, Adam KREJČÍ, S. O BYRNE, A. CHAIDOS, A. GRIONI, Nikos DARZENTAS, I.A.G. ROBERTS and A. KARADIMITRIS. High resolution IgH repertoire analysis reveals fetal liver as the likely origin of life-long, innate B lymphopoiesis in humans. Clinical Immunology. San Diego: Academic Press Inc., 2017, vol. 183, OCT, p. 8-16. ISSN 1521-6616. Available from: https://dx.doi.org/10.1016/j.clim.2017.06.005.
      URL
      RIV/00216224:14740/17:00095711 Article in a journal. English. United States of America.
      Roy, A. (826 United Kingdom of Great Britain and Northern Ireland) -- Bystrý, Vojtěch (203 Czech Republic, belonging to the institution) -- Bohn, G. (826 United Kingdom of Great Britain and Northern Ireland) -- Goudevenou, K. (826 United Kingdom of Great Britain and Northern Ireland) -- Reigl, Tomáš (203 Czech Republic, belonging to the institution) -- Papaioannou, M. (826 United Kingdom of Great Britain and Northern Ireland) -- Krejčí, Adam (203 Czech Republic) -- O Byrne, S. (826 United Kingdom of Great Britain and Northern Ireland) -- Chaidos, A. (826 United Kingdom of Great Britain and Northern Ireland) -- Grioni, A. (380 Italy) -- Darzentas, Nikos (300 Greece, guarantor, belonging to the institution) -- Roberts, I.A.G. (826 United Kingdom of Great Britain and Northern Ireland) -- Karadimitris, A. (826 United Kingdom of Great Britain and Northern Ireland)
      Keywords in English: Human; Fetal; IgH repertoire
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 16/3/2018 10:40.
    29. MIKALOVÁ, Lenka, Michal STROUHAL, Jan OPPELT, Philippe Alain GRANGE, Michel JANIER, Nadjet BENHADDOU, Nicolas DUPIN and David ŠMAJS. Human Treponema pallidum 11q/j isolate belongs to subsp. endemicum but contains two loci with a sequence in TP0548 and TP0488 similar to subsp. pertenue and subsp. pallidum, respectively. PLoS neglected tropical diseases. San Francisco: Public Library of Science, 2017, vol. 11, No 3, p. 1-14. ISSN 1935-2735. Available from: https://dx.doi.org/10.1371/journal.pntd.0005434.
      URL
      Name (in English): Human Treponema pallidum 11q/j isolate belongs to subsp. endemicum but contains two loci with a sequence in TP0548 and TP0488 similar to subsp. pertenue and subsp. pallidum, respectively
      RIV/00216224:14110/17:00094671 Article in a journal. Epidemiology, infection diseases and clinical immunology. English. United States of America.
      Mikalová, Lenka (203 Czech Republic, belonging to the institution) -- Strouhal, Michal (203 Czech Republic, belonging to the institution) -- Oppelt, Jan (203 Czech Republic, belonging to the institution) -- Grange, Philippe Alain (250 France) -- Janier, Michel (250 France) -- Benhaddou, Nadjet (250 France) -- Dupin, Nicolas (250 France) -- Šmajs, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Treponema pallidum
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Vincent Belej, učo 7792. Changed: 7/3/2018 11:48.
    30. BELICKY, Stefan, Hana CERNOCKA, Tomas BERTOK, Alena HOLAZOVA, Kamila RÉBLOVÁ, Emil PALECEK, Jan TKAC and Veronika OSTATNA. Label-free chronopotentiometric glycoprofiling of prostate specific antigen using sialic acid recognizing lectins. Bioelectrochemistry. SWITZERLAND: Elsevier Science SA, 2017, vol. 117, October, p. 89-94. ISSN 1567-5394. Available from: https://dx.doi.org/10.1016/j.bioelechem.2017.06.005.
      URL
      RIV/00216224:14740/17:00098091 Article in a journal. Biochemistry. English. Switzerland.
      Belicky, Stefan (703 Slovakia) -- Cernocka, Hana (203 Czech Republic) -- Bertok, Tomas (703 Slovakia) -- Holazova, Alena (703 Slovakia) -- Réblová, Kamila (203 Czech Republic, guarantor, belonging to the institution) -- Palecek, Emil (203 Czech Republic) -- Tkac, Jan (703 Slovakia) -- Ostatna, Veronika (203 Czech Republic)
      Keywords in English: A prostate specific antigen; Lectin-glycoprotein interaction; Sialylated glycan isomers; Chronopotentiometric analysis; Mercury electrode
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 1/3/2018 13:50.
    31. SEHNAL, David, Mandar DESHPANDE, Radka SVOBODOVÁ VAŘEKOVÁ, Saqib MIR, Karel BERKA, Adam MIDLIK, Lukáš PRAVDA, Sameer VELANKAR and Jaroslav KOČA. LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data. Nature Methods. London, United Kingdom: Nature Publishing Group, 2017, vol. 14, No 12, p. 1121-1122. ISSN 1548-7091. Available from: https://dx.doi.org/10.1038/nmeth.4499.
      URL
      RIV/00216224:14740/17:00098551 Article in a journal. Biochemistry. English. United Kingdom of Great Britain and Northern Ireland.
      Sehnal, David (203 Czech Republic, belonging to the institution) -- Deshpande, Mandar (826 United Kingdom of Great Britain and Northern Ireland) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution) -- Mir, Saqib (826 United Kingdom of Great Britain and Northern Ireland) -- Berka, Karel (203 Czech Republic) -- Midlik, Adam (703 Slovakia, belonging to the institution) -- Pravda, Lukáš (203 Czech Republic, belonging to the institution) -- Velankar, Sameer (826 United Kingdom of Great Britain and Northern Ireland) -- Koča, Jaroslav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: LiteMol; visualization
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 29/3/2018 10:42.
    32. HUTAŘOVÁ VAŘEKOVÁ, Ivana, Jan HUTAŘ, Radka SVOBODOVÁ VAŘEKOVÁ and Karel BERKA. Mapping and 2D visualization of secondary structure elements in cytochromes. In ISMB/ECCB, Prague. 2017.
      URL
      English. Czech Republic.
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: Mgr. et Mgr. Adam Midlik, Ph.D., učo 379962. Changed: 22/1/2020 13:16.
    33. ČERNÁ, Kateřina, Jan OPPELT, Václav ŠEDA, Kateřina MUSILOVÁ, Gabriela PAVLASOVÁ, Veronika SVOBODOVÁ, Jiří MAYER, Šárka POSPÍŠILOVÁ and Marek MRÁZ. MicroRNA induced by DNA damage response regulate the expression of FOXP1 and therapy response in CLL. In 2nd International Conference on the Long and the Short of Non-Coding RNAs, Heraklion, Greece. 2017.
      Name (in English): MicroRNA induced by DNA damage response regulate the expression of FOXP1 and therapy response in CLL
      RIV/00216224:14740/17:00098567 Conference abstract. Oncology and haematology. English.
      Černá, Kateřina (203 Czech Republic, belonging to the institution) -- Oppelt, Jan (203 Czech Republic, belonging to the institution) -- Šeda, Václav (203 Czech Republic, belonging to the institution) -- Musilová, Kateřina (203 Czech Republic, belonging to the institution) -- Pavlasová, Gabriela (203 Czech Republic, belonging to the institution) -- Svobodová, Veronika (203 Czech Republic) -- Mayer, Jiří (203 Czech Republic, belonging to the institution) -- Pospíšilová, Šárka (203 Czech Republic, belonging to the institution) -- Mráz, Marek (203 Czech Republic, belonging to the institution)
      Keywords in English: FOXP1; DNA; expression

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 17/5/2018 14:11.
    34. ČERNÁ, Kateřina, Jan OPPELT, Václav ŠEDA, Kateřina MUSILOVÁ, Gabriela PAVLASOVÁ, Jiří MAYER, Šárka POSPÍŠILOVÁ and Marek MRÁZ. MicroRNA induced by DNA damage response regulates the expression of FOXP1 and therapy response in CLL. In XVII International Workshop on Chronic Lymphocytic Leukemia, USA, New York. 2017.
      Name (in English): MicroRNA induced by DNA damage response regulates the expression of FOXP1 and therapy response in CLL
      RIV/00216224:14740/17:00099046 Conference abstract. Oncology and haematology. English.
      Černá, Kateřina (203 Czech Republic, belonging to the institution) -- Oppelt, Jan (203 Czech Republic, belonging to the institution) -- Šeda, Václav (203 Czech Republic, belonging to the institution) -- Musilová, Kateřina (203 Czech Republic, belonging to the institution) -- Pavlasová, Gabriela (203 Czech Republic, belonging to the institution) -- Mayer, Jiří (203 Czech Republic, belonging to the institution) -- Pospíšilová, Šárka (203 Czech Republic, belonging to the institution) -- Mráz, Marek (203 Czech Republic, belonging to the institution)
      Keywords in English: CLL; FOXP1; DNA damage

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 27/3/2018 14:04.
    35. BENEŠ, Nikola, Luboš BRIM, Martin DEMKO, David ŠAFRÁNEK, Samuel PASTVA and Matej HAJNAL. Model Checking Approach to Discrete Bifurcation Analysis. In Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. 2017.
      URL
      Name (in English): Model Checking Approach to Discrete Bifurcation Analysis
      Informatics. English. Czech Republic.
      Keywords in English: model checking, bifurcation analysis, parameters, phase portrait, temporal logic
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes
      Reviewed: yes

      Changed by: RNDr. Martin Demko, Ph.D., učo 325073. Changed: 4/9/2018 12:05.
    36. BRIM, Luboš, David ŠAFRÁNEK, Nikola BENEŠ, Martin DEMKO, Samuel PASTVA and Matej HAJNAL. Parameter Synthesis of Biological Models by Model Checking: A Case Study. In 4th International Synthetic & Systems Biology Summer School. SSBSS 2017. 2017.
      URL
      Name (in English): Parameter Synthesis of Biological Models by Model Checking: A Case Study
      Informatics. English. Czech Republic.
      Keywords in English: parameter synthesis; model checking; systems biology; dynamical systems; synthetic biology
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: prof. RNDr. Luboš Brim, CSc., učo 197. Changed: 26/2/2018 10:28.
    37. BENEŠ, Nikola, Luboš BRIM, Martin DEMKO, Samuel PASTVA and David ŠAFRÁNEK. Pithya: A Parallel Tool for Parameter Synthesis of Piecewise Multi-Affine Dynamical Systems. In Rupak Majumdar and Viktor Kunčak. Computer Aided Verification. CAV 2017. LNCS 10426. Cham: Springer International Publishing, 2017, p. 591-598. ISBN 978-3-319-63386-2. Available from: https://dx.doi.org/10.1007/978-3-319-63387-9_29.
      URL
      Name (in English): Pithya: A Parallel Tool for Parameter Synthesis of Piecewise Multi-Affine Dynamical Systems
      RIV/00216224:14330/17:00094898 Proceedings paper. Informatics. English. Czech Republic.
      Beneš, Nikola (203 Czech Republic, belonging to the institution) -- Brim, Luboš (203 Czech Republic, guarantor, belonging to the institution) -- Demko, Martin (703 Slovakia, belonging to the institution) -- Pastva, Samuel (703 Slovakia, belonging to the institution) -- Šafránek, David (203 Czech Republic, belonging to the institution)
      Keywords in English: model checking; satisfiability modulo theories; Computational Tree Logic; dynamical systems; distributed algorithms
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes

      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 13/5/2020 19:18.
    38. BRIM, Luboš, Nikola BENEŠ, David ŠAFRÁNEK, Martin DEMKO, Samuel PASTVA and Matej HAJNAL. PITHYA: High-Performance Parameter Synthesis for Biological Models. In Intelligent Systems for Molecular Biology and European Conference on Computational Biology. ISMB/ECCB 2017. 2017.
      URL
      Name (in English): PITHYA: High-Performance Parameter Synthesis for Biological Models
      Informatics. English. Czech Republic.
      Keywords in English: parameter synthesis; model checking; systems biology; dynamical systems; synthetic biology
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: prof. RNDr. Luboš Brim, CSc., učo 197. Changed: 26/2/2018 10:31.
    39. POPPOVÁ, Lucie, Pavlína JANOVSKÁ, B. GONZALEZ, Karla PLEVOVÁ, Vojtěch BYSTRÝ, Karol PÁL, Hana PLEŠINGEROVÁ, Marek BORSKÝ, Helena OLBERTOVÁ, Jana KOTAŠKOVÁ, Yvona BRYCHTOVÁ, Michael DOUBEK, Šárka PAVLOVÁ, S. ALONSO, Vítězslav BRYJA and Šárka POSPÍŠILOVÁ. Promoter methylation of ROR ligand WNTA associates with its expression in chronic lymphocytic leukemia. In 3rd International Conference on New Concepts in Lymphoid Malignancies: Focus on CLL and Indolent Lymphoma. 2017.
      Name (in English): Promoter methylation of ROR ligand WNTA associates with its expression in chronic lymphocytic leukemia
      RIV/00216224:14740/17:00095695 Conference abstract. English.
      Poppová, Lucie (203 Czech Republic, belonging to the institution) -- Janovská, Pavlína (203 Czech Republic, belonging to the institution) -- Gonzalez, B. (724 Spain) -- Plevová, Karla (203 Czech Republic, belonging to the institution) -- Bystrý, Vojtěch (203 Czech Republic, belonging to the institution) -- Pál, Karol (703 Slovakia, belonging to the institution) -- Plešingerová, Hana (203 Czech Republic, belonging to the institution) -- Borský, Marek (203 Czech Republic, belonging to the institution) -- Olbertová, Helena (203 Czech Republic, belonging to the institution) -- Kotašková, Jana (203 Czech Republic, belonging to the institution) -- Brychtová, Yvona (203 Czech Republic, belonging to the institution) -- Doubek, Michael (203 Czech Republic, belonging to the institution) -- Pavlová, Šárka (203 Czech Republic, belonging to the institution) -- Alonso, S. (724 Spain) -- Bryja, Vítězslav (203 Czech Republic, belonging to the institution) -- Pospíšilová, Šárka (203 Czech Republic, belonging to the institution)
      Keywords in English: ROR; CLL; promoter

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 28/3/2018 09:38.
    40. SVOBODOVÁ VAŘEKOVÁ, Radka, Vladimír HORSKÝ, David SEHNAL, Veronika BENDOVÁ, Lukáš PRAVDA and Jaroslav KOČA. Quo Vadis, Biomacromolecular Structure Quality. In Biophysical Society 61st Annual Meeting, New Orleans, Louisiana. 2017. ISSN 1542-0086. Available from: https://dx.doi.org/10.1016/j.bpj.2016.11.1880.
      URL
      Macromolecular chemistry. English. Czech Republic.
      Keywords in English: ValTrendsDB; ValidatorDB; biomacromolecule structure quality; ligand quality; X-ray crystallography; Protein Data Bank; Validation Report; trends; interval analysis; Spearman coefficient
      International impact: yes

      Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 30/6/2020 11:22.
    41. DRSATA, Tomas, Kamila RÉBLOVÁ, Ivana BESSEOVA, Jiří ŠPONER and Filip LANKAS. rRNA C-Loops: Mechanical Properties of a Recurrent Structural Motif. Journal of Chemical Theory and Computation. Washington DC: American Chemical Society, 2017, vol. 13, No 7, p. 3359-3371. ISSN 1549-9618. Available from: https://dx.doi.org/10.1021/acs.jctc.7b00061.
      URL
      RIV/00216224:14740/17:00098093 Article in a journal. Physical chemistry and theoretical chemistry. English. United States of America.
      Drsata, Tomas (203 Czech Republic) -- Réblová, Kamila (203 Czech Republic, belonging to the institution) -- Besseova, Ivana (203 Czech Republic) -- Šponer, Jiří (203 Czech Republic, guarantor, belonging to the institution) -- Lankas, Filip (203 Czech Republic)
      Keywords in English: MOLECULAR-DYNAMICS SIMULATIONS; RESIDUAL DIPOLAR COUPLINGS; A-SITE FINGER; NUCLEIC-ACIDS; TOPOLOGICAL CONSTRAINTS; ISOSTERICITY MATRICES; SECONDARY STRUCTURE; FREE-ENERGY; BASE-PAIRS; TECTO-RNA
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 1/3/2018 13:56.
    42. RŮŽIČKA, Michal, Kamila RÉBLOVÁ and Petr KULHÁNEK. Study of structural and elastic properties of DNA mutation motifs using computational methods. In Modeling Interactions in Biomolecules VIII, Plzeň. 2017.
      Name (in English): Study of structural and elastic properties of DNA mutation motifs using computational methods.
      RIV/00216224:14740/17:00098981 Conference abstract. English.
      Růžička, Michal (203 Czech Republic, belonging to the institution) -- Réblová, Kamila (203 Czech Republic, belonging to the institution) -- Kulhánek, Petr (203 Czech Republic, belonging to the institution)
      Keywords in English: DNA; methods

      Changed by: Bc. Kateřina Kolesová, učo 112275. Changed: 14/2/2018 15:15.
    43. WAYHELOVÁ, Markéta, Jan OPPELT, Jan SMETANA, Filip PARDY, Hana FILKOVÁ, Renata GAILLYOVÁ and Petr KUGLÍK. The clinical impact of targeted „next-generation“ sequencing in molecular diagnostics of intellectual disabilities and multiple congenital abnormalities. In The Biomania Student Scientific Meeting 2017. 2017. ISBN 978-80-210-8737-8.
      Name in Czech: Klinický význam cíleného sekvenování "nové generace" v molekulární diagnostice mentálních retardací a mnohočetných vývojových vad
      Name (in English): The clinical impact of targeted „next-generation“ sequencing in molecular diagnostics of intellectual disabilities and multiple congenital abnormalities
      English. Czech Republic.
      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: Mgr. Markéta Wayhelová, Ph.D., učo 357389. Changed: 28/1/2018 15:48.
    44. WAYHELOVÁ, Markéta, Jan OPPELT, Denisa VESELÁ, Jan SMETANA, Filip PARDY, Hana FILKOVÁ, Dita MATUCHOVÁ, Jana ŠOUKALOVÁ, Renata GAILLYOVÁ and Petr KUGLÍK. The clinical utility of array-CGH and targeted NGS in idiopathic intellectual disabilities and developmental delays: a case report of SCN2A p.Ala263Val variant. In The European Human Genetics Conference ESHG 2017. 2017. ISSN 1018-4813.
      RIV/00216224:14310/17:00114994 Conference abstract. English. Czech Republic.
      Wayhelová, Markéta (203 Czech Republic, belonging to the institution) -- Oppelt, Jan (203 Czech Republic, belonging to the institution) -- Veselá, Denisa (203 Czech Republic, belonging to the institution) -- Smetana, Jan (203 Czech Republic, belonging to the institution) -- Pardy, Filip (203 Czech Republic, belonging to the institution) -- Filková, Hana (203 Czech Republic, belonging to the institution) -- Matuchová, Dita (203 Czech Republic, belonging to the institution) -- Šoukalová, Jana (203 Czech Republic, belonging to the institution) -- Gaillyová, Renata (203 Czech Republic, belonging to the institution) -- Kuglík, Petr (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: neurodevelopmental disorders; NGS; SCN2A
      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: Mgr. Markéta Wayhelová, Ph.D., učo 357389. Changed: 13/5/2021 18:14.
    45. OPPELT, Jan and Marek MRÁZ. The impact of choice of reference gene annotation. In CEITEC PhD Retreat II. 2017. ISBN 978-80-210-8550-3.
      URL
      Name in Czech: Dopad výběru referenční genové anotace
      Name (in English): The impact of choice of reference gene annotation
      Genetics and molecular biology. English. Czech Republic.
      Keywords in English: RNA-Seq, gene annotation, expression, impact

      Changed by: Mgr. Jan Oppelt, Ph.D., učo 323639. Changed: 24/7/2017 18:28.
    46. TOM, Nikola, Ondřej TOM, Jitka MALČÍKOVÁ, Šárka PAVLOVÁ, Blanka KUBEŠOVÁ, Vojtěch BYSTRÝ and Šárka POSPÍŠILOVÁ. ToTem – a tool for automated optimization of variant calling pipelines. In Curie-Pasteur-CEITEC joint young scientist retreat. 2017.
      Name (in English): ToTem – a tool for automated optimization of variant calling pipelines
      English.
      Keywords in English: tool; pipeline

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 28/3/2018 10:40.
    47. HORSKÝ, Vladimír, Veronika BENDOVÁ, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. Trends in biomacromolecular structure quality. In 2nd Annual Users Meeting of iNEXT. 2017.
      Macromolecular chemistry. English. Czech Republic.
      Keywords in English: ValTrendsDB; ValidatorDB; biomacromolecule structure quality; ligand quality; X-ray crystallography; Protein Data Bank; Validation Report; trends; interval analysis; Spearman coefficient
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: doc. RNDr. Radka Svobodová, Ph.D., učo 4056. Changed: 14/3/2018 11:08.
    48. HORSKÝ, Vladimír, Veronika BENDOVÁ, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. Trends in quality and properties of biomacromolecular complexes. In Curie - Pasteur - CEITEC joint young scientist retreat. 2017.
      URL
      Macromolecular chemistry. English. Czech Republic.
      Keywords in English: ValTrendsDB; ValidatorDB; biomacromolecule structure quality; ligand quality; X-ray crystallography; Protein Data Bank; Validation Report; trends; interval analysis; Spearman coefficient

      Changed by: doc. RNDr. Radka Svobodová, Ph.D., učo 4056. Changed: 14/3/2018 11:07.
    49. ŽUFANOVÁ, Zuzana, Radka SVOBODOVÁ VAŘEKOVÁ and Michaela WIMMEROVÁ. Validation and analyses of biomacromolecular ligand conformations. In CEITEC PhD Retreat II. 2017. ISBN 978-80-210-8550-3.
      Biochemistry. English. Czech Republic.
      Keywords in English: structure validation; ligand conformation; MotiveValidator; ValidatorDB
      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: Mgr. Zuzana Hammerová, učo 393906. Changed: 25/1/2018 14:38.

    2016

    1. BENEŠ, Nikola, Luboš BRIM, Martin DEMKO, Samuel PASTVA and David ŠAFRÁNEK. A Model Checking Approach to Discrete Bifurcation Analysis. In John S. Fitzgerald et al. Formal Methods. FM 2016. LNCS 9995. Neuveden: Springer International Publishing, 2016, p. 85-101. ISBN 978-3-319-48988-9. Available from: https://dx.doi.org/10.1007/978-3-319-48989-6_6.
      Name (in English): A Model Checking Approach to Discrete Bifurcation Analysis
      RIV/00216224:14330/16:00088309 Proceedings paper. Informatics. English. Czech Republic.
      Beneš, Nikola (203 Czech Republic, belonging to the institution) -- Brim, Luboš (203 Czech Republic, belonging to the institution) -- Demko, Martin (703 Slovakia, belonging to the institution) -- Pastva, Samuel (703 Slovakia, belonging to the institution) -- Šafránek, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: model checking; satisfiability modulo theories; Computational Tree Logic; dynamical systems; distributed algorithms; bifurcation analysis
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes

      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 13/5/2020 19:12.
    2. BOUCHAL, Pavel, Josef MARYÁŠ, Michaela GALOCZOVÁ, Jakub FAKTOR, Monika DVOŘÁKOVÁ, Roumeliotis THEODOROS, Karolína ZOUFALOVÁ, Lenka ČÁPKOVÁ, Hana IMRICHOVÁ, Eva BUDINSKÁ, Spiros D. GARBIS, Bořivoj VOJTĚŠEK and Rudolf NENUTIL. A novel panel of proteins associated with lymph node metastasis in low-grade breast cancer. In Annual Swiss Proteomics Meeting, Brig, Switzerland, 21.-22.4.2016. 2016.
      Biochemistry. English. Switzerland.
      International impact: yes

      Changed by: doc. Mgr. Pavel Bouchal, Ph.D., učo 8757. Changed: 16/8/2016 15:59.
    3. BOUCHAL, Pavel, Jakub FAKTOR, Lenka ČÁPKOVÁ, Eva BUDINSKÁ and Rudolf NENUTIL. Aplikace SWATH-MS v nádorovém výzkumu. In Setkání uživatelů hmotnostní spektrometrie SCIEX, Praha, 14.6.2016. 2016.
      Biochemistry. Czech. Czech Republic.
      Type of participation: requested lecture

      Changed by: doc. Mgr. Pavel Bouchal, Ph.D., učo 8757. Changed: 16/8/2016 16:21.
    4. MIDLIK, Adam, Karel BERKA, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. Automatická anotácia sekundárnych štruktúr v cytochrómoch P450 a hodnotenie ich štruktúrnej podobnosti. In Národní bioinformatická konference ENBIK. 2016.
      URL
      Slovak. Czech Republic.
      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: Mgr. et Mgr. Adam Midlik, Ph.D., učo 379962. Changed: 22/1/2020 13:36.
    5. JIRSOVÁ, Dagmar, Martina HÁJÍČKOVÁ, Jan OPPELT and Roman GEABUER. Beech transcriptome data: “I am stressed!”. In IUFRO ‘Genomics and Forest Genetics’ Conference. 2016.
      URL
      Name in Czech: Transkriptomická data buku: "Jsem ve stresu!"
      Name (in English): Beech transcriptome data: “I am stressed!”
      English.
      Keywords in English: transcriptome, beech, RNA-Seq, stress, dehydrine

      Changed by: Mgr. Jan Oppelt, Ph.D., učo 323639. Changed: 23/6/2016 12:06.
    6. SMETANA, Jan, Petr KUGLÍK, Henrieta GREŠLIKOVÁ, Renata KUPSKÁ, Pavel NĚMEC, Aneta MIKULÁŠOVÁ, Iveta VALÁŠKOVÁ, Jan OPPELT, Martina ALMÁŠI, Marta KREJČÍ, Zdeněk ADAM, Luděk POUR and Roman HÁJEK. Clonal cytogenetics changes in progression of multiple myeloma to extramedullary relapse and plasmocellular leukemia: a case report. International Journal of Clinical and Experimental Pathology. USA: e-Century Publishing Corporation, Madiso, 2016, vol. 9, No 1, p. 49-62. ISSN 1936-2625.
      URL URL
      Name (in English): Clonal cytogenetics changes in progression of multiple myeloma to extramedullary relapse and plasmocellular leukemia: a case report
      RIV/00216224:14310/16:00088866 Article in a journal. Genetics and molecular biology. English. United States of America.
      Smetana, Jan (203 Czech Republic, guarantor, belonging to the institution) -- Kuglík, Petr (203 Czech Republic, belonging to the institution) -- Grešliková, Henrieta (703 Slovakia, belonging to the institution) -- Kupská, Renata (203 Czech Republic, belonging to the institution) -- Němec, Pavel (203 Czech Republic, belonging to the institution) -- Mikulášová, Aneta (203 Czech Republic, belonging to the institution) -- Valášková, Iveta (203 Czech Republic) -- Oppelt, Jan (203 Czech Republic, belonging to the institution) -- Almáši, Martina (203 Czech Republic, belonging to the institution) -- Krejčí, Marta (203 Czech Republic) -- Adam, Zdeněk (203 Czech Republic) -- Pour, Luděk (203 Czech Republic) -- Hájek, Roman (203 Czech Republic, belonging to the institution)
      Keywords in English: Multiple myeloma; extramedullary relapse; clonal evolution; genetic changes; ploidy switch; TP53 mutations
      International impact: yes
      Reviewed: yes

      Changed by: Ing. Andrea Mikešková, učo 137293. Changed: 26/4/2017 22:00.
    7. DIDI, Vojtěch, Jana VAŠÍČKOVÁ, Radek JUPA, Mariana BENITEZ KEINRAD, Tereza DOBISOVÁ, Anna BÍLKOVÁ, Eva BUDINSKÁ, Radim ČEGAN, Roman HOBZA, Shawn MANSFIELD, Vít GLOSER and Jan HEJÁTKO. Cytokinins control cell differentiation via regulation of secondary cell wall master switches NST1 and NST3. In Norwegian Plant Biology 2016. 2016.
      RIV/00216224:14740/16:00088172 Presentations at conferences. Genetics and molecular biology. English. Norway.
      Didi, Vojtěch (203 Czech Republic, belonging to the institution) -- Vašíčková, Jana (203 Czech Republic) -- Jupa, Radek (203 Czech Republic, belonging to the institution) -- Benitez Keinrad, Mariana (484 Mexico, belonging to the institution) -- Dobisová, Tereza (203 Czech Republic, belonging to the institution) -- Bílková, Anna (203 Czech Republic) -- Budinská, Eva (703 Slovakia, belonging to the institution) -- Čegan, Radim (203 Czech Republic) -- Hobza, Roman (203 Czech Republic, belonging to the institution) -- Mansfield, Shawn (124 Canada) -- Gloser, Vít (203 Czech Republic, belonging to the institution) -- Hejátko, Jan (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Secondary cell wall; cytokinin
      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: Mgr. Vojtěch Didi, Ph.D., učo 178854. Changed: 21/9/2016 12:56.
    8. ŠKORPÍKOVÁ, Lucie, Jana ILGOVÁ, David POTĚŠIL, Zbyněk ZDRÁHAL, Martin DEMKO, Jan OPPELT, Milan GELNAR and Martin KAŠNÝ. Deep insight into secretome and transcriptome of Trichinella spiralis and Trichinela pseudospiralis. In EMOP XII – the 12th European Multicolloquium of Parasitology. 2016.
      URL
      Name in Czech: Detailní pohled na sekretom a transkriptom Trichinella spiralis a Trichinela pseudospiralis
      Name (in English): Deep insight into secretome and transcriptome of Trichinella spiralis and Trichinela pseudospiralis
      RIV/00216224:14310/16:00090454 Requested lectures. Zoology. English. Czech Republic.
      Škorpíková, Lucie (203 Czech Republic, belonging to the institution) -- Ilgová, Jana (703 Slovakia) -- Potěšil, David (203 Czech Republic) -- Zdráhal, Zbyněk (203 Czech Republic) -- Demko, Martin (703 Slovakia) -- Oppelt, Jan (203 Czech Republic) -- Gelnar, Milan (203 Czech Republic) -- Kašný, Martin (203 Czech Republic)
      Keywords in English: Eudiplozoon; serpin
      International impact: yes

      Changed by: RNDr. Martin Kašný, Ph.D., učo 11259. Changed: 24/3/2017 22:32.
    9. PRAVDA, Lukáš, David SEHNAL, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. Detekce biomolekulárních substruktur pomocí PatternQuery. In ENBIK - Národní bioinformatická konference. 2016. ISBN 978-80-7080-960-0.

      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: RNDr. Lukáš Pravda, Ph.D., učo 256262. Changed: 30/6/2016 13:01.
    10. NYGÅRD, Sune Boris, Ben VAINER, Signe Lykke NIELSEN, Fred BOSMAN, Sabine TEJPAR, Arnaud ROTH, Mauro DELORENZI, Nils BRÜNNER and Eva BUDINSKÁ. DNA Topoisomerase I Gene Copy Number and mRNA Expression Assessed as Predictive Biomarkers for Adjuvant Irinotecan in Stage II/III Colon Cancer. Clinical Cancer Research. Philadelphia: American Association for Cancer Research Inc., 2016, vol. 22, No 7, p. 1621-1631. ISSN 1078-0432. Available from: https://dx.doi.org/10.1158/1078-0432.CCR-15-0561.
      RIV/00216224:14110/16:00091498 Article in a journal. Oncology and haematology. English. United States of America.
      Nygård, Sune Boris (208 Denmark) -- Vainer, Ben (208 Denmark) -- Nielsen, Signe Lykke (208 Denmark) -- Bosman, Fred (756 Switzerland) -- Tejpar, Sabine (56 Belgium) -- Roth, Arnaud (756 Switzerland) -- Delorenzi, Mauro (756 Switzerland) -- Brünner, Nils (208 Denmark) -- Budinská, Eva (703 Slovakia, guarantor, belonging to the institution)
      Keywords in English: ADVANCED COLORECTAL-CANCER; III RANDOMIZED-TRIAL; DRUG-SENSITIVITY; VERSION 3.2013; CELL-LINES; CHEMOTHERAPY; FLUOROURACIL; FEASIBILITY; MULTICENTER; RESISTANT
      International impact: yes
      Reviewed: yes

      Changed by: Ing. Mgr. Věra Pospíšilíková, učo 9005. Changed: 4/11/2016 12:33.
    11. BUDINSKÁ, Eva, Fred BOSMAN and Vlad POPOVICI. Experiments in Molecular Subtype Recognition Based on Histopathology Images. Online. In 2016 IEEE 13TH INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI). NEW YORK: IEEE, 2016, p. 1168-1172. ISBN 978-1-4799-2350-2. Available from: https://dx.doi.org/10.1109/ISBI.2016.7493474.
      URL
      RIV/00216224:14310/16:00093777 Proceedings paper. Informatics. English. United States of America.
      Budinská, Eva (703 Slovakia, guarantor, belonging to the institution) -- Bosman, Fred (756 Switzerland) -- Popovici, Vlad (642 Romania, belonging to the institution)
      Keywords in English: colon cancer; histopathology imaging; classification; gastrointestinal tract
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes

      Changed by: Ing. Andrea Mikešková, učo 137293. Changed: 26/4/2017 23:13.
    12. DEMKO, Martin, Nikola BENEŠ, Luboš BRIM, Samuel PASTVA and David ŠAFRÁNEK. High-Performance Symbolic Parameter Synthesis of Biological Models: A Case Study. In Ezio Bartocci et al. Computational Methods in Systems Biology. CMSB 2016. LNBI 9859. Neuveden: Springer International Publishing, 2016, p. 82-97. ISBN 978-3-319-45176-3. Available from: https://dx.doi.org/10.1007/978-3-319-45177-0_6.
      Name (in English): High-Performance Symbolic Parameter Synthesis of Biological Models: A Case Study
      RIV/00216224:14330/16:00088099 Proceedings paper. Informatics. English. Czech Republic.
      Demko, Martin (703 Slovakia, belonging to the institution) -- Beneš, Nikola (203 Czech Republic, belonging to the institution) -- Brim, Luboš (703 Slovakia, belonging to the institution) -- Pastva, Samuel (703 Slovakia, belonging to the institution) -- Šafránek, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: model checking; systems biology; Computational Tree Logic; dynamical systems; distributed algorithms
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes

      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 13/5/2020 19:15.
    13. HEJRET, Václav, Stanislav GEIDL, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. ChrgDescCalc.py – nástroj na výpočet nábojových deskriptorů (ChrgDescCalc.py - tool for calculating charge descriptors). In ENBIK - Národní bioinformatická konference. 2016. ISBN 978-80-7080-960-0.
      URL
      Name (in English): ChrgDescCalc.py - tool for calculating charge descriptors
      RIV/00216224:14740/16:00108723 Conference abstract. Czech. Czech Republic.
      Hejret, Václav (203 Czech Republic, belonging to the institution) -- Geidl, Stanislav (203 Czech Republic, belonging to the institution) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution) -- Koča, Jaroslav (203 Czech Republic, belonging to the institution)
      Keywords in English: ChrgDescCalc.py; calculating charge descriptors
      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 26/3/2020 21:00.
    14. HANÁKOVÁ, Barbora, Jan OPPELT and Eva BUDINSKÁ. Identification of subtype specific microbiome from tumour tissue RNAseq data in colorectal cancer. In 15th European Conference on Computational Biology. 2016.
      URL
      Name in Czech: Identifikace mikrobiomu specifického pro jednotlivé podtypy kolorektálního karcinomu v RNAseq datech nádorové tkáně

      Keywords in English: microbiome, subtypes, colorectal cancer
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: Mgr. Barbora Zwinsová, učo 356955. Changed: 21/9/2016 13:08.
    15. POPOVICI, Vlad, Eva BUDINSKÁ, Lenka ČÁPKOVÁ, Daniel SCHWARZ, Ladislav DUŠEK, Josef FEIT and Rolf JAGGI. Joint analysis of histopathology image features and gene expression in breast cancer. BMC Bioinformatics. London: BioMed Central, 2016, vol. 17, No 209, p. 1-9. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-016-1072-z.
      RIV/00216224:14110/16:00088933 Article in a journal. Oncology and haematology. English. United Kingdom of Great Britain and Northern Ireland.
      Popovici, Vlad (642 Romania, guarantor, belonging to the institution) -- Budinská, Eva (703 Slovakia, belonging to the institution) -- Čápková, Lenka (203 Czech Republic, belonging to the institution) -- Schwarz, Daniel (203 Czech Republic, belonging to the institution) -- Dušek, Ladislav (203 Czech Republic, belonging to the institution) -- Feit, Josef (203 Czech Republic, belonging to the institution) -- Jaggi, Rolf (756 Switzerland)
      Keywords in English: Histopathology images; Image analysis; Biomarker discovery; Gene expression; Multimodal data mining
      International impact: yes
      Reviewed: yes

      Changed by: Ing. Mgr. Věra Pospíšilíková, učo 9005. Changed: 19/12/2016 17:58.
    16. MOLINA-SERRANO, Diego, Vassia SCHIZA, Christis DEMOSTHENOUS, Emmanouil STAVROU, Jan OPPELT, Dimitris KYRIAKOU, Wei LIU, Gertrude ZISSER, Helmut BERGLER, Weiwei DANG and Antonis KIRMIZIS. Loss of Nat4 and its associated histone H4 N-terminal acetylation mediates calorie restriction-induced longevity. EMBO reports. Hoboken: Wiley-Blackwell, 2016, vol. 17, No 12, p. 1829-1843. ISSN 1469-221X. Available from: https://dx.doi.org/10.15252/embr.201642540.
      URL
      RIV/00216224:14740/16:00091870 Article in a journal. Genetics and molecular biology. English. United States of America.
      Molina-Serrano, Diego (196 Cyprus) -- Schiza, Vassia (196 Cyprus) -- Demosthenous, Christis (196 Cyprus) -- Stavrou, Emmanouil (196 Cyprus) -- Oppelt, Jan (203 Czech Republic, guarantor, belonging to the institution) -- Kyriakou, Dimitris (196 Cyprus) -- Liu, Wei (840 United States of America) -- Zisser, Gertrude (40 Austria) -- Bergler, Helmut (40 Austria) -- Dang, Weiwei (840 United States of America) -- Kirmizis, Antonis (196 Cyprus)
      Keywords in English: Nat4; Pnc1; calorie restriction; histone N-terminal acetylation; lifespan
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Eva Špillingová, učo 110713. Changed: 17/3/2017 15:33.
    17. JANEČKOVÁ, Veronika, Ivana JEŽÍŠKOVÁ, Tereza TLAMKOVÁ, Eva BUDINSKÁ, Z. KOSAŘOVÁ, Martin ČULEN, A. FOLTA, Petr CETKOVSKÝ, P. ŽÁK, Tomáš SZOTKOWSKI, P. JINDRA and Zdeněk RÁČIL. Mutační analýza pacientů s akutní myeloidní leukémií – optimalizace hodnocení sekvenačních dat a předběžné výsledky národní studie. In XXX. Olomoucké hematologické dny. 2016.
      Changed by: Bc. Kateřina Kolesová, učo 112275. Changed: 8/12/2016 13:53.
    18. RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Aleš KŘENEK, Jana PAZÚRIKOVÁ, Stanislav GEIDL and Jaroslav KOČA. NEEMP – nástroj pro parametrizaci EEM. In ENBIK2016. 2016. ISBN 978-80-7080-960-0.
      URL
      Czech. Czech Republic.
      Keywords in English: EEM, parameterization, atomic charges

      Changed by: RNDr. Tomáš Raček, Ph.D., učo 324965. Changed: 18/10/2016 11:28.
    19. RAČEK, Tomáš, Jana PAZÚRIKOVÁ, Radka SVOBODOVÁ VAŘEKOVÁ, Stanislav GEIDL, Aleš KŘENEK, Francesco Luca FALGINELLA, Vladimír HORSKÝ, Václav HEJRET and Jaroslav KOČA. NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges. Journal of Cheminformatics. London: BIOMED CENTRAL LTD, 2016, vol. 8, October, p. nestránkováno, 14 pp. ISSN 1758-2946. Available from: https://dx.doi.org/10.1186/s13321-016-0171-1.
      URL
      RIV/00216224:14740/16:00091249 Article in a journal. Physical chemistry and theoretical chemistry. English. United Kingdom of Great Britain and Northern Ireland.
      Raček, Tomáš (203 Czech Republic, belonging to the institution) -- Pazúriková, Jana (703 Slovakia, belonging to the institution) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution) -- Geidl, Stanislav (203 Czech Republic, belonging to the institution) -- Křenek, Aleš (203 Czech Republic, belonging to the institution) -- Falginella, Francesco Luca (380 Italy, belonging to the institution) -- Horský, Vladimír (203 Czech Republic, belonging to the institution) -- Hejret, Václav (203 Czech Republic, belonging to the institution) -- Koča, Jaroslav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Partial atomic charges; Electronegativity equalization method; EEM; EEM parameterization; wwPDB CCD database
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Eva Špillingová, učo 110713. Changed: 22/2/2017 10:46.
    20. ADAMS, Paul D., Kathleen AERTGEERTS, Cary BAUER, Jeffrey A. BELL, Helen M. BERMAN, Talapady N. BHAT, Jeff M. BLANEY, Evan BOLTON, Gerard BRICOGNE, David BROWN, Stephen K. BURLEY, David A. CASE, Kirk L. CLARK, Tom DARDEN, Paul EMSLEY, Victoria A. FEHER, Zukang FENG, Colin R. GROOM, Seth F. HARRIS, Jorg HENDLE, Thomas HOLDER, Andrzej JOACHIMIAK, Gerard J. KLEYWEGT, Tobias KROJER, Joseph MARCOTRIGIANO, Alan E. MARK, John L. MARKLEY, Matthew MILLER, Wladek MINOR, Gaetano T. MONTELIONE, Garib MURSHUDOV, Atsushi NAKAGAWA, Haruki NAKAMURA, Anthony NICHOLLS, Marc NICKLAUS, Robet T. NOLTE, Anil K. PADYANA, Catherine E. PEISHOFF, Susan PIENIAZEK, Randy J. READ, Chenghua SHAO, Steven SHERIFF, Oliver SMART, Stephen SOISSON, John SPURLINO, Terry STOUCH, Radka SVOBODOVÁ VAŘEKOVÁ, Wolfram TEMPEL, Thomas C. TERWILLIGER, Dale TRONRUD, Sameer VELANKAR, Suzanna C. WARD, Gregory L. WARREN, John D. WESTBROOK, Pamela WILLIAMS, Huanwang YANG and Jasmine YOUNG. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. Structure. CAMBRIDGE: CELL PRESS, 2016, vol. 24, No 4, p. 502-508. ISSN 0969-2126. Available from: https://dx.doi.org/10.1016/j.str.2016.02.017.
      URL
      RIV/00216224:14740/16:00093806 Article in a journal. Biochemistry. English. United States of America.
      Adams, Paul D. (840 United States of America) -- Aertgeerts, Kathleen (840 United States of America) -- Bauer, Cary (840 United States of America) -- Bell, Jeffrey A. (840 United States of America) -- Berman, Helen M. (840 United States of America) -- Bhat, Talapady N. (840 United States of America) -- Blaney, Jeff M. (840 United States of America) -- Bolton, Evan (840 United States of America) -- Bricogne, Gerard (826 United Kingdom of Great Britain and Northern Ireland) -- Brown, David (826 United Kingdom of Great Britain and Northern Ireland) -- Burley, Stephen K. (840 United States of America) -- Case, David A. (840 United States of America) -- Clark, Kirk L. (840 United States of America) -- Darden, Tom (840 United States of America) -- Emsley, Paul (826 United Kingdom of Great Britain and Northern Ireland) -- Feher, Victoria A. (840 United States of America) -- Feng, Zukang (840 United States of America) -- Groom, Colin R. (826 United Kingdom of Great Britain and Northern Ireland) -- Harris, Seth F. (840 United States of America) -- Hendle, Jorg (840 United States of America) -- Holder, Thomas (840 United States of America) -- Joachimiak, Andrzej (840 United States of America) -- Kleywegt, Gerard J. (826 United Kingdom of Great Britain and Northern Ireland) -- Krojer, Tobias (826 United Kingdom of Great Britain and Northern Ireland) -- Marcotrigiano, Joseph (840 United States of America) -- Mark, Alan E. (36 Australia) -- Markley, John L. (840 United States of America) -- Miller, Matthew (36 Australia) -- Minor, Wladek (840 United States of America) -- Montelione, Gaetano T. (840 United States of America) -- Murshudov, Garib (840 United States of America) -- Nakagawa, Atsushi (392 Japan) -- Nakamura, Haruki (392 Japan) -- Nicholls, Anthony (826 United Kingdom of Great Britain and Northern Ireland) -- Nicklaus, Marc (840 United States of America) -- Nolte, Robet T. (840 United States of America) -- Padyana, Anil K. (840 United States of America) -- Peishoff, Catherine E. (840 United States of America) -- Pieniazek, Susan (840 United States of America) -- Read, Randy J. (826 United Kingdom of Great Britain and Northern Ireland) -- Shao, Chenghua (840 United States of America) -- Sheriff, Steven (840 United States of America) -- Smart, Oliver (840 United States of America) -- Soisson, Stephen (840 United States of America) -- Spurlino, John (840 United States of America) -- Stouch, Terry (840 United States of America) -- Svobodová Vařeková, Radka (203 Czech Republic, guarantor, belonging to the institution) -- Tempel, Wolfram (124 Canada) -- Terwilliger, Thomas C. (840 United States of America) -- Tronrud, Dale (840 United States of America) -- Velankar, Sameer (826 United Kingdom of Great Britain and Northern Ireland) -- Ward, Suzanna C. (840 United States of America) -- Warren, Gregory L. (826 United Kingdom of Great Britain and Northern Ireland) -- Westbrook, John D. (840 United States of America) -- Williams, Pamela (826 United Kingdom of Great Britain and Northern Ireland) -- Yang, Huanwang (840 United States of America) -- Young, Jasmine (840 United States of America)
      Keywords in English: PROTEIN DATA-BANK; CAMBRIDGE STRUCTURAL DATABASE; ELECTRON-DENSITY; TASK-FORCE; INFORMATION; MACROMOLECULES; GENERATION; MOLECULES; TOOLS; PDB

      Changed by: Mgr. Eva Špillingová, učo 110713. Changed: 6/3/2017 17:33.
    21. BENEŠ, Nikola, Luboš BRIM, Martin DEMKO, Samuel PASTVA and David ŠAFRÁNEK. Parallel SMT-Based Parameter Synthesis with Application to Piecewise Multi-Affine Systems. In Cyrille Artho et al. Automated Technology for Verification and Analysis. ATVA 2016. LNCS 9938. Neuveden: Springer International Publishing, 2016, p. 192-208. ISBN 978-3-319-46519-7. Available from: https://dx.doi.org/10.1007/978-3-319-46520-3_13.
      Name (in English): Parallel SMT-Based Parameter Synthesis with Application to Piecewise Multi-Affine Systems
      RIV/00216224:14330/16:00088098 Proceedings paper. Informatics. English. Czech Republic.
      Beneš, Nikola (203 Czech Republic, belonging to the institution) -- Brim, Luboš (203 Czech Republic, belonging to the institution) -- Demko, Martin (703 Slovakia, belonging to the institution) -- Pastva, Samuel (703 Slovakia, belonging to the institution) -- Šafránek, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: model checking; satisfiability modulo theories; Computational Tree Logic; dynamical systems; distributed algorithms
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes

      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 13/5/2020 19:15.
    22. PAZÚRIKOVÁ, Jana, Tomáš RAČEK, Stanislav GEIDL, Radka SVOBODOVÁ VAŘEKOVÁ and Aleš KŘENEK. Parametrizace ekvalizace elektronegativity metodou diferenciální evoluce (Parametrization of Electronegativity Equalization Method through Differential Evolution). In ENBIK 2016. 2016.
      Name in Czech: Parametrizace ekvalizace elektronegativity metodou diferenciální evoluce
      Name (in English): Parametrization of Electronegativity Equalization Method through Differential Evolution
      Computer hardware and software. Czech. Czech Republic.
      Keywords in English: atomic charges; EEM; differential evolution
      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: Ing. Jana Hozzová, Ph.D., učo 411498. Changed: 3/8/2016 09:31.
    23. OPPELT, Jan, Marie JANKŮJOVÁ and Marek MRÁZ. Porovnání výsledků genové exprese pří použití různých anotací genomu (Comparison of the results of gene expression using different genome annotation). In ENBIK2016. 2016. ISBN 978-80-7080-960-0.
      URL
      Name in Czech: Porovnání výsledků genové exprese pří použití různých anotací genomu
      Name (in English): Comparison of the results of gene expression using different genome annotation
      Czech. Czech Republic.
      Keywords in English: gene expression, RNA-Seq, gen annotation, genome annotation

      Changed by: Mgr. Jan Oppelt, Ph.D., učo 323639. Changed: 23/6/2016 12:08.
    24. KOČA, Jaroslav, Radka SVOBODOVÁ VAŘEKOVÁ, Lukáš PRAVDA, Karel BERKA, Stanislav GEIDL, David SEHNAL and Michal OTYEPKA. Structural Bioinformatics Tools for Drug Design: Extraction of Biologically Relevant Information from Structural Databases. Online. 1st ed. Cham: Springer International Publishing, 2016, 144 pp. SpringerBriefs in Biochemistry and Molecular Biology. ISBN 978-3-319-47388-8. Available from: https://dx.doi.org/10.1007/978-3-319-47388-8.
      URL
      RIV/00216224:14740/16:00093315 Book on a specialized topic. Biochemistry. English. United States of America.
      Koča, Jaroslav (203 Czech Republic, guarantor, belonging to the institution) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution) -- Pravda, Lukáš (203 Czech Republic, belonging to the institution) -- Berka, Karel (203 Czech Republic) -- Geidl, Stanislav (203 Czech Republic, belonging to the institution) -- Sehnal, David (203 Czech Republic, belonging to the institution) -- Otyepka, Michal (203 Czech Republic)
      Keywords in English: Structural bioinformatics tools; databases of molecular structure; drug design; detection of biomacromolecular fragments; validation of ligands; detection of channels and pores
      International impact: yes
      Reviewed: yes

      Changed by: prof. RNDr. Jaroslav Koča, DrSc., učo 610. Changed: 9/4/2017 11:36.
    25. PERCZEL, András, Atanas G. ATANASOV, Vladimír SKLENÁŘ, Jiří NOVÁČEK, Veronika PAPOUŠKOVÁ, Pavel KADEŘÁVEK, Lukáš ŽÍDEK, Henryk KOZLOWSKI, Joanna WATLY, Aleksandra HECEL, Paulina KOLKOWSKA, Jaroslav KOČA, Radka SVOBODOVÁ VAŘEKOVÁ, Lukáš PRAVDA, David SEHNAL, Vladimír HORSKÝ, Stanislav GEIDL, Ricardo D. ENRIZ, Pavel MATĚJKA, Adéla JENIŠTOVÁ, Marcela DENDISOVÁ, Alžběta KOKAISLOVÁ, Volkmar WEISSIG, Mark OLSEN, Aidan COFFEY, Jude AJUEBOR, Ruth KEARY, Marta SANZ-GAITERO, Mark J. VAN RAAIJ, Olivia MCAULIFFE, Birgit WALTENBERGER, Andrei MOCAN, Karel ŠMEJKAL, Elke H. HEISS, Marc DIEDERICH, Robert MUSIOL, Janez KOŠMRLJ, Jaroslaw POLANSKI and Josef JAMPÍLEK. The Eighth Central European Conference “Chemistry towards Biology”: Snapshot. MOLECULES. Basel: MDPI AG, 2016, vol. 21, No 10, p. nestránkováno, 27 pp. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules21101381.
      URL
      Name (in English): The Eighth Central European Conference “Chemistry towards Biology”: Snapshot
      RIV/00216224:14310/16:00091715 Article in a journal. Physical chemistry and theoretical chemistry. English. Switzerland.
      Perczel, András (348 Hungary) -- Atanasov, Atanas G. (40 Austria) -- Sklenář, Vladimír (203 Czech Republic, belonging to the institution) -- Nováček, Jiří (203 Czech Republic, belonging to the institution) -- Papoušková, Veronika (203 Czech Republic, belonging to the institution) -- Kadeřávek, Pavel (203 Czech Republic, belonging to the institution) -- Žídek, Lukáš (203 Czech Republic, belonging to the institution) -- Kozlowski, Henryk (616 Poland) -- Watly, Joanna (616 Poland) -- Hecel, Aleksandra (616 Poland) -- Kolkowska, Paulina (616 Poland) -- Koča, Jaroslav (203 Czech Republic, belonging to the institution) -- Svobodová Vařeková, Radka (203 Czech Republic, guarantor, belonging to the institution) -- Pravda, Lukáš (203 Czech Republic, belonging to the institution) -- Sehnal, David (203 Czech Republic, belonging to the institution) -- Horský, Vladimír (203 Czech Republic, belonging to the institution) -- Geidl, Stanislav (203 Czech Republic, belonging to the institution) -- Enriz, Ricardo D. (32 Argentina) -- Matějka, Pavel (203 Czech Republic) -- Jeništová, Adéla (203 Czech Republic) -- Dendisová, Marcela (203 Czech Republic) -- Kokaislová, Alžběta (203 Czech Republic) -- Weissig, Volkmar (840 United States of America) -- Olsen, Mark (840 United States of America) -- Coffey, Aidan (372 Ireland) -- Ajuebor, Jude (372 Ireland) -- Keary, Ruth (372 Ireland) -- Sanz-Gaitero, Marta (724 Spain) -- van Raaij, Mark J. (724 Spain) -- McAuliffe, Olivia (372 Ireland) -- Waltenberger, Birgit (40 Austria) -- Mocan, Andrei (642 Romania) -- Šmejkal, Karel (203 Czech Republic) -- Heiss, Elke H. (40 Austria) -- Diederich, Marc (410 Republic of Korea) -- Musiol, Robert (616 Poland) -- Košmrlj, Janez (705 Slovenia) -- Polanski, Jaroslaw (616 Poland) -- Jampílek, Josef (703 Slovakia)
      Keywords in English: drug design; targeting; chemical biology; biological chemistry; proteins and nucleic acids; natural compounds; synthesis; biomaterials; nanoparticles; ADME; drug delivery systems
      International impact: yes
      Reviewed: yes

      Changed by: prof. RNDr. Jaroslav Koča, DrSc., učo 610. Changed: 9/4/2017 11:32.
    26. ISON, Jon, Kristoffer RAPACKI, Herve MENAGER, Matus KALAS, Emil RYDZA, Piotr CHMURA, Christian ANTHON, Niall BEARD, Karel BERKA, Dan BOLSER, Tim BOOTH, Anthony BRETAUDEAU, Jan BREZOVSKÝ, Rita CASADIO, Gianni CESARENI, Frederik COPPENS, Michael CORNELL, Gianmauro CUCCURU, Kristian DAVIDSEN, Gianluca DELLA VEDOVA, Tunca DOGAN, Olivia DOPPELT-AZEROUAL, Laura EMERY, Elisabeth GASTEIGER, Thomas GATTER, Tatyana GOLDBERG, Marie GROSJEAN, Bjoern GRUNING, Manuela HELMER-CITTERICH, Hans IENASESCU, Vassilios IOANNIDIS, Martin Closter JESPERSEN, Rafael JIMENEZ, Nick JUTY, Peter JUVAN, Maximilian KOCH, Camille LAIBE, Jing-Woei LI, Luana LICATA, Fabien MAREUIL, Ivan MICETIC, Rune Mollegaard FRIBORG, Sebastien MORETTI, Chris MORRIS, Steffen MOLLER, Aleksandra NENADIC, Hedi PETERSON, Giuseppe PROFITI, Peter RICE, Paolo ROMANO, Paola RONCAGLIA, Rabie SAIDI, Andrea SCHAFFERHANS, Veit SCHWAMMLE, Callum SMITH, Maria Maddalena SPEROTTO, Heinz STOCKINGER, Radka SVOBODOVÁ VAŘEKOVÁ, Silvio C. E. TOSATTO, Victor DE LA TORRE, Paolo UVA, Allegra VIA, Guy YACHDAV, Federico ZAMBELLI, Gert VRIEND, Burkhard ROST, Helen PARKINSON, Peter LONGREEN and Soren BRUNAK. Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research. Oxford: Oxford University Press, 2016, vol. 44, D1, p. "D38"-"D47", 10 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkv1116.
      URL
      RIV/00216224:14310/16:00089977 Article in a journal. Biochemistry. English. United Kingdom of Great Britain and Northern Ireland.
      Ison, Jon (208 Denmark) -- Rapacki, Kristoffer (208 Denmark) -- Menager, Herve (250 France) -- Kalas, Matus (578 Norway) -- Rydza, Emil (208 Denmark) -- Chmura, Piotr (208 Denmark) -- Anthon, Christian (208 Denmark) -- Beard, Niall (826 United Kingdom of Great Britain and Northern Ireland) -- Berka, Karel (203 Czech Republic) -- Bolser, Dan (826 United Kingdom of Great Britain and Northern Ireland) -- Booth, Tim (826 United Kingdom of Great Britain and Northern Ireland) -- Bretaudeau, Anthony (250 France) -- Brezovský, Jan (203 Czech Republic, guarantor, belonging to the institution) -- Casadio, Rita (380 Italy) -- Cesareni, Gianni (380 Italy) -- Coppens, Frederik (56 Belgium) -- Cornell, Michael (826 United Kingdom of Great Britain and Northern Ireland) -- Cuccuru, Gianmauro (380 Italy) -- Davidsen, Kristian (208 Denmark) -- Della Vedova, Gianluca (380 Italy) -- Dogan, Tunca (826 United Kingdom of Great Britain and Northern Ireland) -- Doppelt-Azeroual, Olivia (250 France) -- Emery, Laura (826 United Kingdom of Great Britain and Northern Ireland) -- Gasteiger, Elisabeth (756 Switzerland) -- Gatter, Thomas (276 Germany) -- Goldberg, Tatyana (276 Germany) -- Grosjean, Marie (250 France) -- Gruning, Bjoern (276 Germany) -- Helmer-Citterich, Manuela (380 Italy) -- Ienasescu, Hans (208 Denmark) -- Ioannidis, Vassilios (756 Switzerland) -- Jespersen, Martin Closter (208 Denmark) -- Jimenez, Rafael (826 United Kingdom of Great Britain and Northern Ireland) -- Juty, Nick (826 United Kingdom of Great Britain and Northern Ireland) -- Juvan, Peter (705 Slovenia) -- Koch, Maximilian (826 United Kingdom of Great Britain and Northern Ireland) -- Laibe, Camille (826 United Kingdom of Great Britain and Northern Ireland) -- Li, Jing-Woei (156 China) -- Licata, Luana (380 Italy) -- Mareuil, Fabien (250 France) -- Micetic, Ivan (380 Italy) -- Friborg, Rune Mollegaard (208 Denmark) -- Moretti, Sebastien (756 Switzerland) -- Morris, Chris (826 United Kingdom of Great Britain and Northern Ireland) -- Moller, Steffen (276 Germany) -- Nenadic, Aleksandra (826 United Kingdom of Great Britain and Northern Ireland) -- Peterson, Hedi (233 Estonia) -- Profiti, Giuseppe (380 Italy) -- Rice, Peter (826 United Kingdom of Great Britain and Northern Ireland) -- Romano, Paolo (380 Italy) -- Roncaglia, Paola (826 United Kingdom of Great Britain and Northern Ireland) -- Saidi, Rabie (826 United Kingdom of Great Britain and Northern Ireland) -- Schafferhans, Andrea (276 Germany) -- Schwammle, Veit (208 Denmark) -- Smith, Callum (826 United Kingdom of Great Britain and Northern Ireland) -- Sperotto, Maria Maddalena (208 Denmark) -- Stockinger, Heinz (756 Switzerland) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution) -- Tosatto, Silvio C. E. (380 Italy) -- de la Torre, Victor (724 Spain) -- Uva, Paolo (380 Italy) -- Via, Allegra (380 Italy) -- Yachdav, Guy (276 Germany) -- Zambelli, Federico (380 Italy) -- Vriend, Gert (528 Netherlands) -- Rost, Burkhard (276 Germany) -- Parkinson, Helen (826 United Kingdom of Great Britain and Northern Ireland) -- Longreen, Peter (208 Denmark) -- Brunak, Soren (208 Denmark)
      Keywords in English: MOLECULAR-BIOLOGY; SOFTWARE-DEVELOPMENT; LIFE SCIENCES; WEB SERVICES; COLLECTION; COMPILATION; SEQANSWERS; FRAMEWORK
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Eva Špillingová, učo 110713. Changed: 21/3/2017 15:46.
    27. ARTAZA, H., N. C. HONG, M. CORPAS, A. CORPUZ, R. HOOFT, R. C. JIMENEZ, B. LESKOŠEK, B. G. OLIVIER, J. STOURAC, Radka SVOBODOVÁ VAŘEKOVÁ, T. VAN PARYS and D. VAUGHAN. Top 10 metrics for life science software good practices [version 1; referees: 2 approved]. F1000Research. F1000 Research Ltd., 2016, vol. 5, August, p. nestránkováno, 9 pp. ISSN 2046-1402. Available from: https://dx.doi.org/10.12688/f1000research.9206.1.
      URL
      Medical facilities, apparatus and equipment. English.
      Keywords in English: biomedicine; feasibility study; human; organization; software

      Changed by: Mgr. Eva Špillingová, učo 110713. Changed: 20/3/2017 10:58.
    28. HAJNAL, Matej, David ŠAFRÁNEK, Martin DEMKO, Samuel PASTVA, Pavel KREJČÍ and Luboš BRIM. Toward Modelling and Analysis of Transient and Sustained Behaviour of Signalling Pathways. In Eugenio Cinquemani. Hybrid Systems Biology. HSB 2016. LNBI 9957. Neuveden: Springer International Publishing, 2016, p. 57-66. ISBN 978-3-319-47150-1. Available from: https://dx.doi.org/10.1007/978-3-319-47151-8_4.
      Name (in English): Toward Modelling and Analysis of Transient and Sustained Behaviour of Signalling Pathways
      RIV/00216224:14330/16:00088117 Proceedings paper. Informatics. English. Czech Republic.
      Hajnal, Matej (703 Slovakia, belonging to the institution) -- Šafránek, David (203 Czech Republic, guarantor, belonging to the institution) -- Demko, Martin (703 Slovakia, belonging to the institution) -- Pastva, Samuel (703 Slovakia, belonging to the institution) -- Krejčí, Pavel (203 Czech Republic, belonging to the institution) -- Brim, Luboš (203 Czech Republic, belonging to the institution)
      Keywords in English: signalling pathways; systems biology; parameter synthesis; dynamical systems; parameter estimation
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes

      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 13/5/2020 19:15.
    29. GEIDL, Stanislav, Václav HEJRET, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. Využití nábojových deskriptorů v chemoinformatice. In ENBIK - Národní bioinformatická konference. 2016. ISBN 978-80-7080-960-0.

      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: RNDr. Stanislav Geidl, Ph.D., učo 327887. Changed: 10/5/2017 18:44.
    30. GRILLOVÁ, Linda, Jan OPPELT, Lucy POVEDA, Giancarlo RUSSO, Radim STRNADEL and David ŠMAJS. Whole genome sequencing of Treponema pallidum DNA directly from human samples. In Spirochetes, Biology of Gordon Research Conference. 2016.
      URL
      Name in Czech: Celogenomové sekvenování DNA Treponema pallidum přímo z lidských vzorků
      Name (in English): Whole genome sequencing of Treponema pallidum DNA directly from human samples

      Keywords in English: WGS, Treponema, pallidum, human, samples, directly

      Changed by: Mgr. Jan Oppelt, Ph.D., učo 323639. Changed: 14/7/2016 09:54.

    2015

    1. PRAVDA, Lukáš, Karel BERKA, Radka SVOBODOVÁ VAŘEKOVÁ, David SEHNAL, Crina-Maria IONESCU, Michal OTYEPKA and Jaroslav KOČA. Anatomy of protein channels. In CEITEC PhD Retreat, Valtice, The Czech Republic. 2015. ISBN 978-80-210-7825-3.
      URL
      Name (in English): Anatomy of protein channels

      Keywords in English: MOLE, protein, channel, physicochemical properties
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: RNDr. Lukáš Pravda, Ph.D., učo 256262. Changed: 16/7/2015 01:42.
    2. IONESCU, Crina-Maria, David SEHNAL, Francesco Luca FALGINELLA, Purbaj PANT, Lukáš PRAVDA, Tomáš BOUCHAL, Radka SVOBODOVÁ VAŘEKOVÁ, Stanislav GEIDL and Jaroslav KOČA. AtomicChargeCalculator: Interactive Web-based calculation of atomic charges in large biomolecular complexes and drug like molecules. Journal of Cheminformatics. London: BIOMED CENTRAL LTD, 2015, vol. 7, No 50, p. "nestránkováno", 13 pp. ISSN 1758-2946. Available from: https://dx.doi.org/10.1186/s13321-015-0099-x.
      URL
      RIV/00216224:14310/15:00081192 Article in a journal. Biochemistry. English. United Kingdom of Great Britain and Northern Ireland.
      Ionescu, Crina-Maria (642 Romania, belonging to the institution) -- Sehnal, David (203 Czech Republic, belonging to the institution) -- Falginella, Francesco Luca (380 Italy, belonging to the institution) -- Pant, Purbaj (524 Nepal, belonging to the institution) -- Pravda, Lukáš (203 Czech Republic, belonging to the institution) -- Bouchal, Tomáš (203 Czech Republic, belonging to the institution) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution) -- Geidl, Stanislav (203 Czech Republic, belonging to the institution) -- Koča, Jaroslav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Conformationally dependent atomic charges; Biomacromolecules; Drug-like molecules; Paracetamol; Benzoic acids; Protegrin; Proteasome; Allostery; Chemical reactivity
      International impact: yes
      Reviewed: yes

      Changed by: Olga Křížová, učo 56639. Changed: 29/3/2016 10:59.
    3. BOUCHAL, Pavel, Monika DVOŘÁKOVÁ, Theodoros ROUMELIOTIS, Zbyněk BORTLÍČEK, Ivana IHNATOVÁ, Iva PROCHÁZKOVÁ, JTC HO, Josef MARYÁŠ, Hana IMRICHOVÁ, Eva BUDINSKÁ, Rostislav VYZULA, Spiros D, GARBIS, Bořivoj VOJTĚŠEK and Rudolf NENUTIL. Combined proteomics and transcriptomics identifies carboxypeptidase B1 and NF-kappa B associated proteins as putative biomarkers of metastasis in low grade breast cancer. In European Cancer Congress 2015, Vienna, Austria, 25.-29.9.2015 - European Journal of Cancer, Vol. 51, S3. Oxford: Elsevier Science Inc., 2015. s. S24-S25, 2 s. 2015. ISSN 0959-8049.
      Biochemistry. English. United Kingdom of Great Britain and Northern Ireland.
      Keywords in English: proteomics; breast cancer
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: doc. Mgr. Pavel Bouchal, Ph.D., učo 8757. Changed: 9/1/2019 21:20.
    4. BOUCHAL, Pavel, Monika DVOŘÁKOVÁ, Theodoros ROUMELIOTIS, Zbyněk BORTLÍČEK, Ivana IHNATOVÁ, Iva PROCHÁZKOVÁ, JTC HO, Josef MARYÁŠ, Hana IMRICHOVÁ, Eva BUDINSKÁ, Rostislav VYZULA, SD GARBIS, Bořivoj VOJTĚŠEK and Rudolf NENUTIL. Combined Proteomics and Transcriptomics Identifies Carboxypeptidase B1 and Nuclear Factor kappa B (NF-kappa B) Associated Proteins as Putative Biomarkers of Metastasis in Low Grade Breast Cancer. MOLECULAR & CELLULAR PROTEOMICS. BETHESDA: AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC, 2015, vol. 14, No 7, p. 1814-1830. ISSN 1535-9476. Available from: https://dx.doi.org/10.1074/mcp.M114.041335.
      RIV/00216224:14310/15:00080960 Article in a journal. Biochemistry. English. United States of America.
      Bouchal, Pavel (203 Czech Republic, belonging to the institution) -- Dvořáková, Monika (203 Czech Republic, belonging to the institution) -- Roumeliotis, Theodoros (300 Greece) -- Bortlíček, Zbyněk (203 Czech Republic, belonging to the institution) -- Ihnatová, Ivana (703 Slovakia, belonging to the institution) -- Procházková, Iva (203 Czech Republic) -- Ho, JTC (826 United Kingdom of Great Britain and Northern Ireland) -- Maryáš, Josef (203 Czech Republic, belonging to the institution) -- Imrichová, Hana (203 Czech Republic) -- Budinská, Eva (703 Slovakia, belonging to the institution) -- Vyzula, Rostislav (203 Czech Republic) -- Garbis, SD (300 Greece) -- Vojtěšek, Bořivoj (203 Czech Republic) -- Nenutil, Rudolf (203 Czech Republic)
      Keywords in English: Breast cancer; metastasis; low grade; biomarkers; cancer biology; gene expression; iTRAQ; mass spectrometry; Orbitrap FTMS; transcriptomics; Carboxypeptidase B1; NFkB
      International impact: yes
      Reviewed: yes

      Changed by: Ing. Andrea Mikešková, učo 137293. Changed: 29/3/2016 15:34.
    5. JENSEN, Niels F., Jjan STENVANG, Mette K. BECK, Barbora HANÁKOVÁ, Kirstine C. BELLING, Khoa N. DO, Birgitte VIUFF, Sune B. NYGARD, Ramneek GUPTA, Mads H. RASMUSSEN, Line S. TARPGAARD, Tine P. HANSEN, Eva BUDINSKÁ, Per PFEIFFER, Fred BOSMAN, Sabine TEJPAR, Arnaud ROTH, Mauro DELORENZI, Claus L. ANDERSEN, Maria U. RØMER, Nils BRÜNNER and José M.A. MOREIRA. Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance. Molecular oncology. Oxford: Elsevier Science Inc., 2015, vol. 9, No 6, p. 1169-1185. ISSN 1574-7891. Available from: https://dx.doi.org/10.1016/j.molonc.2015.02.008.
      Name (in English): Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance
      RIV/00216224:14110/15:00083911 Article in a journal. Oncology and haematology. English. United Kingdom of Great Britain and Northern Ireland.
      Jensen, Niels F. (208 Denmark) -- Stenvang, Jjan (208 Denmark) -- Beck, Mette K. (208 Denmark) -- Hanáková, Barbora (203 Czech Republic, belonging to the institution) -- Belling, Kirstine C. (208 Denmark) -- Do, Khoa N. (208 Denmark) -- Viuff, Birgitte (208 Denmark) -- Nygard, Sune B. (208 Denmark) -- Gupta, Ramneek (208 Denmark) -- Rasmussen, Mads H. (208 Denmark) -- Tarpgaard, Line S. (208 Denmark) -- Hansen, Tine P. (208 Denmark) -- Budinská, Eva (703 Slovakia, guarantor, belonging to the institution) -- Pfeiffer, Per (208 Denmark) -- Bosman, Fred (756 Switzerland) -- Tejpar, Sabine (56 Belgium) -- Roth, Arnaud (756 Switzerland) -- Delorenzi, Mauro (756 Switzerland) -- Andersen, Claus L. (208 Denmark) -- Rømer, Maria U. (208 Denmark) -- Brünner, Nils (208 Denmark) -- Moreira, José M.A. (208 Denmark)
      Keywords in English: Colorectal cancer; Oxaliplatin; Irinotecan; Resistance; Cell line models
      International impact: yes
      Reviewed: yes

      Changed by: Soňa Böhmová, učo 232884. Changed: 21/9/2015 11:56.
    6. BRIM, Luboš, Martin DEMKO, Samuel PASTVA and David ŠAFRÁNEK. High-Performance Discrete Bifurcation Analysis for Piecewise-Affine Dynamical Systems. In Alessandro Abate, David Šafránek. Hybrid Systems Biology Fourth International Workshop, HSB 2015, Madrid, Spain, September 4-5, 2015. Revised Selected Papers. LNCS 9271. Neuveden: Springer International Publishing, 2015, p. 58-74. ISBN 978-3-319-26915-3. Available from: https://dx.doi.org/10.1007/978-3-319-26916-0_4.
      elektronická verze v nakladatelství Springer
      RIV/00216224:14330/15:00081134 Proceedings paper. Informatics. English. Czech Republic.
      Brim, Luboš (203 Czech Republic, belonging to the institution) -- Demko, Martin (703 Slovakia, belonging to the institution) -- Pastva, Samuel (703 Slovakia, belonging to the institution) -- Šafránek, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: bifurcation analysis; model checking; dynamical systems; formal methods
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes

      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 28/4/2016 21:13.
    7. GEIDL, Stanislav, Tomáš BOUCHAL, Tomáš RAČEK, Radka SVOBODOVÁ VAŘEKOVÁ, Václav HEJRET, Aleš KŘENEK, Ruben ABAGYAN and Jaroslav KOČA. High-quality and universal empirical atomic charges for chemoinformatics applications. Journal of Cheminformatics. London: BIOMED CENTRAL LTD, 2015, vol. 7, DEC, p. 1-10. ISSN 1758-2946. Available from: https://dx.doi.org/10.1186/s13321-015-0107-1.
      URL
      RIV/00216224:14740/15:00081211 Article in a journal. Biochemistry. English. United Kingdom of Great Britain and Northern Ireland.
      Geidl, Stanislav (203 Czech Republic, belonging to the institution) -- Bouchal, Tomáš (203 Czech Republic, belonging to the institution) -- Raček, Tomáš (203 Czech Republic, belonging to the institution) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution) -- Hejret, Václav (203 Czech Republic, belonging to the institution) -- Křenek, Aleš (203 Czech Republic, belonging to the institution) -- Abagyan, Ruben (840 United States of America) -- Koča, Jaroslav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Partial atomic charges; Electronegativity Equalization Method; EEM; Quantum mechanics; QM; Drug-like molecules
      International impact: yes
      Reviewed: yes

      Changed by: Olga Křížová, učo 56639. Changed: 29/3/2016 11:06.
    8. GEIDL, Stanislav, Radka SVOBODOVÁ VAŘEKOVÁ, Veronika BENDOVÁ, Lukáš PETRUSEK, Crina-Maria IONESCU, Zdeněk JURKA, Ruben A. ABAGYAN and Jaroslav KOČA. How Does the Methodology of 3D Structure Preparation Influence the Quality of pK(a) Prediction? Journal of Chemical Information and Modeling. WASHINGTON: AMER CHEMICAL SOC, 2015, vol. 55, No 6, p. 1088-1097. ISSN 1549-9596. Available from: https://dx.doi.org/10.1021/ci500758w.
      URL
      RIV/00216224:14740/15:00082988 Article in a journal. Biochemistry. English. United States of America.
      Geidl, Stanislav (203 Czech Republic, belonging to the institution) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution) -- Bendová, Veronika (203 Czech Republic, belonging to the institution) -- Petrusek, Lukáš (203 Czech Republic, belonging to the institution) -- Ionescu, Crina-Maria (642 Romania, belonging to the institution) -- Jurka, Zdeněk (203 Czech Republic, belonging to the institution) -- Abagyan, Ruben A. (840 United States of America) -- Koča, Jaroslav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: ELECTRONEGATIVITY EQUALIZATION METHOD; ATOMIC CHARGE SCHEMES; CARBOXYLIC-ACIDS; PHYSICAL-PROPERTIES; PHENOLS; VALUES; VALIDATION; QSAR; DESCRIPTORS; ALGORITHM
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Eva Špillingová, učo 110713. Changed: 20/3/2017 11:00.
    9. PRAVDA, Lukáš, Karel BERKA, Radka SVOBODOVÁ VAŘEKOVÁ, David SEHNAL, Michal OTYEPKA and Jaroslav KOČA. MOLE 2.5: Improved Tool for Analysis of Ligand-Accessible Channels. In ISMB/ECCB 2015, Dublin, Ireland. 2015.
      URL
      Name (in English): MOLE 2.5: Improved Tool for Analysis of Ligand-Accessible Channels

      Keywords in English: channel, protein, PDB, MOLE
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: RNDr. David Sehnal, Ph.D., učo 140435. Changed: 12/11/2015 12:41.
    10. SVOBODOVÁ VAŘEKOVÁ, Radka, Lukáš PRAVDA, David SEHNAL, Crina-Maria IONESCU and Jaroslav KOČA. MotiveQuery: Web application for fast detection of biomacromolecular fragments in the entire Protein Data Bank. In ISMB/ECCB 2015, Dublin, Ireland. 2015.
      URL
      Name (in English): MotiveQuery: Web application for fast detection of biomacromolecular fragments in the entire Protein Data Bank

      Keywords in English: protein structure, pattern, PDB, query language
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: RNDr. Lukáš Pravda, Ph.D., učo 256262. Changed: 16/7/2015 01:23.
    11. BRIM, Luboš, Milan ČEŠKA, Martin DEMKO, Samuel PASTVA and David ŠAFRÁNEK. Parameter Synthesis by Parallel Coloured CTL Model Checking. In Roux, Olivier and Bourdon, Jérémie. Computational Methods in Systems Biology. Neuveden: Springer International Publishing, 2015, p. 251-263. ISBN 978-3-319-23400-7. Available from: https://dx.doi.org/10.1007/978-3-319-23401-4_21.
      RIV/00216224:14330/15:00081130 Proceedings paper. Informatics. English. Czech Republic.
      Brim, Luboš (203 Czech Republic, belonging to the institution) -- Češka, Milan (203 Czech Republic, belonging to the institution) -- Demko, Martin (703 Slovakia, belonging to the institution) -- Pastva, Samuel (703 Slovakia, belonging to the institution) -- Šafránek, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: model checking; systems biology; Computational Tree Logic; dynamical systems; distributed algorithms
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes

      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 28/4/2016 15:06.
    12. SEHNAL, David, Lukáš PRAVDA, Radka SVOBODOVÁ VAŘEKOVÁ, Crina-Maria IONESCU and Jaroslav KOČA. PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank. Nucleic Acids Research. Oxford: Oxford University Press, 2015, vol. 43, W1, p. "W383"-"W388", 6 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkv561.
      URL
      Name (in English): PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank
      RIV/00216224:14740/15:00082987 Article in a journal. Biochemistry. English. United Kingdom of Great Britain and Northern Ireland.
      Sehnal, David (203 Czech Republic, belonging to the institution) -- Pravda, Lukáš (203 Czech Republic, belonging to the institution) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution) -- Ionescu, Crina-Maria (642 Romania, belonging to the institution) -- Koča, Jaroslav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: protein structure; protein structural pattern; structural bioinformatics; Protein Data Bank; query language
      International impact: yes
      Reviewed: yes

      Changed by: Mgr. Eva Špillingová, učo 110713. Changed: 29/3/2016 16:44.
    13. PRAVDA, Lukáš, David SEHNAL, Radka SVOBODOVÁ VAŘEKOVÁ, Crina-Maria IONESCU and Jaroslav KOČA. PatternQuery: Web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank. In 3Dsig meeting at ISMB/ECCB 2015, Dublin, Ireland. 2015.
      URL
      Name (in English): PatternQuery: Web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank
      Biochemistry. English. United Kingdom of Great Britain and Northern Ireland.
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: RNDr. David Sehnal, Ph.D., učo 140435. Changed: 12/11/2015 12:40.
    14. IHNATOVÁ, Ivana and Eva BUDINSKÁ. ToPASeq: an R package for topology-based pathway analysis of microarray and RNA-Seq data. BMC Bioinformatics. London: BioMed Central, 2015, vol. 16, No 350, p. 1-8. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-015-0763-1.
      RIV/00216224:14110/15:00085197 Article in a journal. Applied statistics, operational research. English. United Kingdom of Great Britain and Northern Ireland.
      Ihnatová, Ivana (703 Slovakia, belonging to the institution) -- Budinská, Eva (703 Slovakia, guarantor, belonging to the institution)
      Keywords in English: Topology; Pathway analysis; Microarray; RNA-Seq; Packages
      International impact: yes
      Reviewed: yes

      Changed by: Ing. Mgr. Věra Pospíšilíková, učo 9005. Changed: 11/12/2015 10:20.
    15. SCHIMEK, Michael G., Eva BUDINSKÁ, Karl G. KUGLER, Vendula ŠVENDOVÁ, Jie DING and Shili LIN. TopKLists: a comprehensive R package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists. STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY. BERLIN: WALTER DE GRUYTER GMBH, 2015, vol. 14, No 3, p. 311-316. ISSN 2194-6302. Available from: https://dx.doi.org/10.1515/sagmb-2014-0093.
      Name (in English): TopKLists: a comprehensive R package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists
      RIV/00216224:14110/15:00083345 Article in a journal. Biochemistry. English. Germany.
      Schimek, Michael G. (40 Austria) -- Budinská, Eva (703 Slovakia, guarantor, belonging to the institution) -- Kugler, Karl G. (276 Germany) -- Švendová, Vendula (203 Czech Republic) -- Ding, Jie (840 United States of America) -- Lin, Shili (840 United States of America)
      Keywords in English: 62G99; 65K10; 68N01; 65C60; 62F07
      International impact: yes
      Reviewed: yes

      Changed by: Soňa Böhmová, učo 232884. Changed: 9/7/2015 14:21.
    16. SEHNAL, David, Radka SVOBODOVÁ VAŘEKOVÁ, Lukáš PRAVDA, Crina-Maria IONESCU, Stanislav GEIDL, Vladimír HORSKÝ, Deepti JAISWAL, Michaela WIMMEROVÁ and Jaroslav KOČA. ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank. Nucleic Acids Research. United Kingdom: Oxford University Press, 2015, vol. 43, D1, p. "D369"-"D375", 7 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gku1118.
      URL
      RIV/00216224:14310/15:00082165 Article in a journal. Biochemistry. English. United Kingdom of Great Britain and Northern Ireland.
      Sehnal, David (203 Czech Republic, belonging to the institution) -- Svobodová Vařeková, Radka (203 Czech Republic, belonging to the institution) -- Pravda, Lukáš (203 Czech Republic, belonging to the institution) -- Ionescu, Crina-Maria (642 Romania, belonging to the institution) -- Geidl, Stanislav (203 Czech Republic, belonging to the institution) -- Horský, Vladimír (203 Czech Republic, belonging to the institution) -- Jaiswal, Deepti (356 India, belonging to the institution) -- Wimmerová, Michaela (203 Czech Republic, belonging to the institution) -- Koča, Jaroslav (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: chemical analysis; chemical structure; chirality; computer program; data analysis; data base; molecular model; process development; Protein Data Bank; systematic error; validation process; ValidatorDB
      International impact: yes
      Reviewed: yes

      Changed by: Olga Křížová, učo 56639. Changed: 29/3/2016 11:26.
    17. SVOBODOVÁ VAŘEKOVÁ, Radka, David SEHNAL, Lukáš PRAVDA, Crina-Maria IONESCU and Jaroslav KOČA. ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank. In 3Dsig meeting at ISMB/ECCB 2015, Dublin, Ireland. 2015.
      URL
      Name (in English): ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank
      Biochemistry. English. United Kingdom of Great Britain and Northern Ireland.
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: RNDr. Lukáš Pravda, Ph.D., učo 256262. Changed: 16/7/2015 01:36.
    18. BOUCHAL, Pavel, Josef MARYÁŠ, Monika DVOŘÁKOVÁ, Theodoros ROUMELIOTIS, Jenny HO, Jakub FAKTOR, Lenka ČÁPKOVÁ, Hana IMRICHOVÁ, Eva BUDINSKÁ, S D GARBIS, Bořivoj VOJTĚŠEK and Rudolf NENUTIL. Vyhledávání a validace potenciálních biomarkerů metastazování u nádorů prsu typu luminal A (Discovery and validation of potential biomarkers of metastasis in luminal A breast cancer). In Neformální proteomické setkání. 2015.
      Name (in English): Discovery and validation of potential biomarkers of metastasis in luminal A breast cancer
      Biochemistry. Czech.
      Type of participation: active participation (giving a lecture, organization, etc.)

      Changed by: doc. Mgr. Pavel Bouchal, Ph.D., učo 8757. Changed: 22/1/2016 10:23.
    19. SEHNAL, David, Lukáš PRAVDA, Crina-Maria IONESCU, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. WebChemistry: a platform for the detection, validation, comparison, and characterization of structural patterns in biomacromolecules. In ISMB/ECCB 2015, Dublin, Ireland. 2015.
      URL
      Name (in English): WebChemistry: a platform for the detection, validation, comparison, and characterization of structural patterns in biomacromolecules

      Keywords in English: webchemistry, mole, motivevalidator, patternquery
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes

      Changed by: RNDr. David Sehnal, Ph.D., učo 140435. Changed: 12/11/2015 12:39.
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