Publication Records

MIHÁLIKOVÁ, Ivana, Martin FRIÁK, Matej PIVOLUSKA, Martin PLESCH, Martin SAIP and Mojmír ŠOB. Best-Practice Aspects of Quantum-Computer Calculations: A Case Study of the Hydrogen Molecule. MOLECULES. SWITZERLAND: MDPI, 2022, vol. 27, No 3, p. 1-15. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules27030597.

PIVOLUSKA, Matej and Martin PLESCH. Implementation of quantum compression on IBM quantum computers. Nature Scientific Reports. USA: NATURE PUBLISHING GROUP, 2022, vol. 12, No 1, p. 5841-5849. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-022-09881-8.

OĽHA, Jaroslav, Terézia SLANINÁKOVÁ, Martin GENDIAR, Matej ANTOL and Vlastislav DOHNAL. Learned Indexing in Proteins: Extended Work on Substituting Complex Distance Calculations with Embedding and Clustering Techniques. arXiv, 2022. Available from: https://dx.doi.org/10.48550/ARXIV.2208.08910.

OĽHA, Jaroslav, Terézia SLANINÁKOVÁ, Martin GENDIAR, Matej ANTOL and Vlastislav DOHNAL. Learned Indexing in Proteins: Substituting Complex Distance Calculations with Embedding and Clustering Techniques. In Tomáš Skopal, Fabrizio Falchi, Jakub Lokoč, Maria Luisa Sapino, Ilaria Bartolini, Marco Patella. Similarity Search and Applications, 15th International Conference, SISAP 2022, Bologna, Italy, October 5–7, 2022, Proceedings. 1st ed. Cham: Springer Cham, 2022, p. 274-282. ISBN 978-3-031-17848-1. Available from: https://dx.doi.org/10.1007/978-3-031-17849-8_22.

RAI, Ashutosh, Matej PIVOLUSKA, Souradeep SASMAL, Manik BANIK, Sibasish GHOSH and Martin PLESCH. Self-testing quantum states via nonmaximal violation in Hardy's test of nonlocality. PHYSICAL REVIEW A. UNITED STATES: AMER PHYSICAL SOC, 2022, vol. 105, No 5, p. 1-8. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.105.052227.

MIHÁLIKOVÁ, Ivana, Matej PIVOLUSKA, Martin PLESCH, Martin FRIÁK, Daniel NAGAJ and Mojmír ŠOB. The Cost of Improving the Precision of the Variational Quantum Eigensolver for Quantum Chemistry. Nanomaterials. London: MDPI, 2022, vol. 12, No 2, p. 1-22. ISSN 2079-4991. Available from: https://dx.doi.org/10.3390/nano12020243.

DUDOVÁ, Zdenka, Nathalie CONTE, Jeremy MASON, Dalibor STUCHLÍK, Radim PEŠA, Csaba HALMAGYI, Zinaida PEROVA, Abayomi MOSAKU, Ross THORNE, Alex FOLLETTE, Ľuboslav PIVARČ, Radim ŠAŠINKA, Muhammad USMAN, Steven NEUHAUSER, Dale A BEGLEY, Debra M KRUPKE, Massimiliano FRASSÀ, Alessandro FIORI, Riccardo CORSI, Luca VEZZADINI, Claudio ISELLA, Andrea BERTOTTI, Carol BULT, Helen PARKINSON, Enzo MEDICO, Terrence MEEHAN and Aleš KŘENEK. The EurOPDX Data Portal: an open platform for patient-derived cancer xenograft data sharing and visualization. BMC Genomics. BioMed Central, 2022, vol. 23, No 1, p. 1-11. ISSN 1471-2164. Available from: https://dx.doi.org/10.1186/s12864-022-08367-1.

FRIÁK, Martin, Martin ZELENÝ, Martina MAZALOVÁ, Ivana MIHÁLIKOVÁ, Ilja TUREK, Jiří KAŠTIL, Jiří KAMARÁD, Martin MÍŠEK, Zdeněk ARNOLD, Oldřich SCHNEEWEISS and Mojmír ŠOB. The impact of disorder on the 4O-martensite of Ni-Mn-Sn Heusler alloy. Intermetallics. Oxford: Elsevier Science, 2022, vol. 151, December, p. 1-11. ISSN 0966-9795. Available from: https://dx.doi.org/10.1016/j.intermet.2022.107708.

STŘELÁK, David, Amaya JIMÉNEZ-MORENO, José VILAS, Erney RAMÍREZ-APORTELA, Ruben SÁNCHEZ-GARCÍA, David MALUENDA, Javier VARGAS, David HERREROS, Estrella FERNÁNDEZ-GIMÉNEZ, Federico DE ISIDRO-GÓMEZ, Jan HORÁČEK, David MYŠKA, Martin HORÁČEK, Pablo CONESA, Yunior FONSECA-REYNA, Jorge JIMÉNEZ, Marta MARTÍNEZ, Mohamad HARASTANI, Slavica JONIĆ, Jiří FILIPOVIČ, Roberto MARABINI, José CARAZO and Carlos SORZANO. Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion. Molecules. Mayer und Muller, 2021, vol. 26, No 20, p. 1-14. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules26206224.

HERREROS, David, Roy R LEDERMAN, James KRIEGER, Amaya JIMENEZ-MORENO, Marta MARTINEZ, David MYŠKA, David STŘELÁK, Jiří FILIPOVIČ, Ivet BAHAR, Jose Maria CARAZO and Carlos Oscar S SANCHEZ. Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials. International Union of Crystallography Journals. online, 2021, vol. 8, No 6, p. 992-1005. ISSN 2052-2525. Available from: https://dx.doi.org/10.1107/S2052252521008903.

VIŠŇOVSKÝ, Vladimír, Viktória SPIŠAKOVÁ, Jana HOZZOVÁ, Jaroslav OĽHA, Dalibor TRAPL, Vojtěch SPIWOK, Lukáš HEJTMÁNEK and Aleš KŘENEK. Complex simulation workflows in containerized high-performance environment. In Armenia S., Geril P. Proc. ESM 2021. Brusel: EUROSIS, 2021, p. 42-45. ISBN 978-94-92859-18-1.

SLANINÁKOVÁ, Terézia, Matej ANTOL, Jaroslav OĽHA and Vlastislav DOHNAL. Data-driven Learned Metric Index: an Unsupervised Approach. In 14th International Conference on Similarity Search and Applications (SISAP 2021). Cham: Springer, 2021, p. 81-94. ISBN 978-3-030-89656-0. Available from: https://dx.doi.org/10.1007/978-3-030-89657-7_7.

RAI, A., Matej PIVOLUSKA, Martin PLESCH, S. SASMAL, M. BANIK and S. GHOSH. Device-independent bounds from Cabello's nonlocality argument. Physical review A. New York: The American Physical Society, 2021, vol. 103, No 6, p. 1-7. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.103.062219.

DODA, M., Matej PIVOLUSKA and Martin PLESCH. Choice of mutually unbiased bases and outcome labeling affecting measurement outcome secrecy. Physical review A. New York: The American Physical Society, 2021, vol. 103, No 3, p. 032206-32213. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.103.032206.

MACÁK, Martin, Štefan BOJNÁK and Barbora BÜHNOVÁ. Identification of Unintentional Perpetrator Attack Vectors using Simulation Game: A Case Study. Online. In Proceedings of the 16th Conference on Computer Science and Intelligence Systems. New York: IEEE, 2021, p. 349-356. ISBN 978-83-959183-8-4. Available from: https://dx.doi.org/10.15439/2021F85.

PETROVIČ, Filip, Jiří FILIPOVIČ, David STŘELÁK, Jana HOZZOVÁ and Richard TREMBECKÝ. Kernel Tuning Toolkit 2.0. 2021.

ANTOL, Matej, Jaroslav OĽHA, Terézia SLANINÁKOVÁ and Vlastislav DOHNAL. Learned metric index - proposition of learned indexing for unstructured data. Information Systems. Elsevier, 2021, vol. 100, No 101774, p. 1-12. ISSN 0306-4379. Available from: https://dx.doi.org/10.1016/j.is.2021.101774.

MÍČ, Vladimír and Pavel ZEZULA. On the Similarity Search With Hamming Space Sketches. In Zhaohao Sun. Intelligent Analytics With Advanced Multi-Industry Applications. Hershey, PA (USA): IGI Global, 2021, p. 97-127. First edition, 1. ISBN 978-1-7998-4963-6. Available from: https://dx.doi.org/10.4018/978-1-7998-4963-6.ch005.

DODA, M., M. HUBER, G. MURTA, Matej PIVOLUSKA, Martin PLESCH and C. VLACHOU. Quantum Key Distribution Overcoming Extreme Noise: Simultaneous Subspace Coding Using High-Dimensional Entanglement. PHYSICAL REVIEW APPLIED. COLLEGE PK: AMER PHYSICAL SOC, 2021, vol. 15, No 3, p. 034003-34017. ISSN 2331-7019. Available from: https://dx.doi.org/10.1103/PhysRevApplied.15.034003.

HOZZOVÁ, Jana, Jiří FILIPOVIČ, Amin NEZARAT, Jaroslav OĽHA and Filip PETROVIČ. Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures. Data in Brief. Elsevier, 2021, vol. 39, December, p. 1-12. ISSN 2352-3409. Available from: https://dx.doi.org/10.1016/j.dib.2021.107631.

PIVOLUSKA, Matej, Martin PLESCH, M. FARKAS, Natália RUŽIČKOVÁ, C. FLEGEL, N.H. VALENCIA, W. MCCUTCHEON, M. MALIK and EA AGUILAR. Semi-device-independent random number generation with flexible assumptions. NPJ QUANTUM INFORMATION. BERLIN: NATURE RESEARCH, 2021, vol. 7, No 1, p. 1-12. ISSN 2056-6387. Available from: https://dx.doi.org/10.1038/s41534-021-00387-1.

MÍČ, Vladimír, Tomáš RAČEK, Aleš KŘENEK and Pavel ZEZULA. Similarity Search for an Extreme Application: Experience and Implementation. In Nora Reyes, Richard Connor, Nils Kriege, Daniyal Kazempour, Ilaria Bartolini, Erich Schubert, Jian-Jia Chen. Similarity Search and Applications: 14th International Conference, SISAP 2021, Dortmund, Germany, September 29 - October 1, 2021, Proceedings. Cham: Springer, 2021, p. 265-279. ISBN 978-3-030-89656-0. Available from: https://dx.doi.org/10.1007/978-3-030-89657-7_20.

MACÁK, Martin, Daniela KRÚŽELOVÁ, Stanislav CHREN and Barbora BÜHNOVÁ. Using Process Mining for Git Log Analysis of Projects in a Software Development Course. Education and Information Technologies. 2021, vol. 26, No 5, p. 5939-5969. ISSN 1360-2357. Available from: https://dx.doi.org/10.1007/s10639-021-10564-6.

DUDOVÁ, Zdenka, Alice HÁLOVÁ, Dalibor VALÍK and Petr HOLUB. BBMRI-CZ as a Partner for Personalized Medicine and Translational Medical Research. In RANK 2020. 2020. ISBN 978-80-87436-17-2.

DUDOVÁ, Zdenka, Dalibor VALÍK, Kristína GREPLOVÁ and Alice HÁLOVÁ. Představení BBMRI-CZ jako partnera pro výzkum v oblasti translační medicíny (Introduction of BBMRI-CZ as a research partner for the translational medicine). In 41. Imunoanalytické dny 2020. 2020. ISBN 978-80-88120-28-5.

PLESCH, Martin, Samuel PLESNIK and Natália RUŽIČKOVÁ. The IYPT and the 'Ring Oiler' problem. European Journal of Physics. BRISTOL: Institute of Physics Publishing, 2020, vol. 41, No 3, p. 1-12. ISSN 0143-0807. Available from: https://dx.doi.org/10.1088/1361-6404/ab6414.

VALÍK, Dalibor, Alice HÁLOVÁ, Kristína GREPLOVÁ and Zdenka DUDOVÁ. The Biobanking Research Infrastructure BBMRI-CZ as a Critical Tool to Enhance Translational Cancer Research. In XXXX. Imunoanalytické dny. 2019.

LINDEN, Mikael, Michal PROCHÁZKA, Ilkka LAPPALAINEN, Dominik František BUČÍK, Pavel VYSKOČIL, Martin KUBA, Sami SILÉN, Peter BELMANN, Alexander SCZYRBA, Steven NEWHOUSE, Luděk MATYSKA and Tommi NYRÖNEN. Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research. F1000 Research Ltd., 2018, vol. 7, No 2018, p. 1-16. ISSN 2046-1402. Available from: https://dx.doi.org/10.12688/f1000research.15161.1.

DUDOVÁ, Zdenka, Martin BARTOŠÍK and Miroslav FOJTA. Magnetic bead-based electrochemical assay for determination of DNA methyltransferase activity. Electrochimica Acta. Amsterdam: Elsevier Science, 2017, vol. 231, MAR 20 2017, p. 575-581. ISSN 0013-4686. Available from: https://dx.doi.org/10.1016/j.electacta.2017.02.104.

KLUSÁČEK, Dalibor, Boris PARÁK and Lukáš HEJTMÁNEK. Scheduling Challenges in a Shared Private Cloud Infrastructure. CGW Workshop'17 Proceedings. 2017, vol. 2017, No 1, p. 23-24.

DUDOVÁ, Zdenka, Jan ŠPAČEK, Luděk HAVRAN, Hana PIVOŇKOVÁ and Miroslav FOJTA. Analysis of Denatured PCR Products Modified with 7-deazapurine Bases at Hanging Mercury Drop Electrode. 2016. ISBN 978-80-905221-4-5.

HEJTMÁNEK, Lukáš, David ANTOŠ and Luboš KOPECKÝ. Choice of Data Transfer Protocols in Remote Storage Applications. CESNET, z.s.p.o., 2013, 21 pp. CESNET Technical Report 1/2013.

SITERA, Jiří, Zdeněk ŠUSTR, Boris PARÁK and Daniel KOUŘIL. Monitoring Virtualized Infrastructure in the Context of Grid Job Execution. International Journal On Advances in Systems and Measurements. 2013, vol. 6, 3,4. ISSN 1942-261X.