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    2024

    1. HANOUSEK, Tomáš, Terézia SLANINÁKOVÁ, Tomáš REBOK and Růžena JANOUTOVÁ. A dataset of hyperspectral Look-Up Tables for 3.5 million traits and structural combinations of Central European temperate broadleaf forests. 2024. Available from: https://dx.doi.org/10.48700/datst.bcnpf-47q73.
    2. FLORIS-JAN, Willemsen, Richard SCHOONHOVEN, Jiří FILIPOVIČ, Jacob O. TØRRING, Rob van NIEUWPOORT and Ben van WERKHOVEN. A methodology for comparing optimization algorithms for auto-tuning. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2024, vol. 109, October 2024, p. 489-504. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2024.05.021.
    3. LAGRAA, Sofiane, Martin HUSÁK, Hamida SEBA, Satyanarayana VUPPALA, Radu STATE and Moussa OUEDRAOGO. A review on graph-based approaches for network security monitoring and botnet detection. International Journal of Information Security. Springer, 2024, vol. 23, No 1, p. 119-140. ISSN 1615-5262. Available from: https://dx.doi.org/10.1007/s10207-023-00742-7.
    4. HRADISKÁ, Helena, Martin KUREČKA, Jan BERÁNEK, Guglielmo TEDESCHI, Vladimír VIŠŇOVSKÝ, Aleš KŘENEK and Vojtěch SPIWOK. Acceleration of Molecular Simulations by Parametric Time-Lagged tSNE Metadynamics. The Journal of Physical Chemistry B. 2024. ISSN 1520-6106. Available from: https://dx.doi.org/10.1021/acs.jpcb.3c05669.
    5. RUMAN, Ádám, Martin DRAŠAR, Lukáš SADLEK, Shanchieh Jay YANG and Pavel ČELEDA. Adversary Tactic Driven Scenario and Terrain Generation with Partial Infrastructure Specification. Online. In ARES '24: Proceedings of the 19th International Conference on Availability, Reliability and Security. New York, United States: Association for Computing Machinery, 2024, p. 1-11. ISBN 979-8-4007-1718-5. Available from: https://dx.doi.org/10.1145/3664476.3664523.
    6. HARAŠTA, Jakub. AI nástroje pro právníky. In Umělá inteligence (AI) – pomocník i hrozba (Unie státních zástupců/Justiční akademie). 2024.
    7. AlphaFind (software)
      SLANINÁKOVÁ, Terézia, David PROCHÁZKA, Jakub ČILLÍK, Lucie NOVOTNÁ and Adrián ROŠINEC. AlphaFind. 2024. Available from: https://dx.doi.org/10.5281/zenodo.11085862.
    8. SLANINÁKOVÁ, Terézia, David PROCHÁZKA, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Jakub ČILLÍK, Miriama JÁNOŠOVÁ, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL and Matej ANTOL. AlphaFind — discover structure similarity across the proteome in AlphaFold DB. In Elixir All-Hands 2024. 2024. Available from: https://dx.doi.org/10.7490/f1000research.1119872.1.
    9. NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Katarína GREŠOVÁ, Jaroslav OĽHA, Vlastislav DOHNAL, Adrián ROŠINEC and Matej ANTOL. AlphaFind: Discover structure similarity across the entire known proteome – data and model. 2024. Available from: https://dx.doi.org/10.48700/datst.d35zf-1ja47.
    10. PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL and Matej ANTOL. AlphaFind: discover structure similarity across the proteome in AlphaFold DB. Nucleic acids research. Oxford: Oxford University Press, 2024, vol. 52, July 5, p. W182-W186, 5 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkae397.
    11. BERANEK, Jan, Aleš KŘENEK and Vojtěch SPIWOK. Analysis of metadynamics simulations by metadynminer.py. Bioinformatics. OXFORD: Oxford University Press, 2024, vol. 40, No 10, 4 pp. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btae614.
    12. ROŠINEC, Adrián, Tomáš PAVLÍK, Terézia SLANINÁKOVÁ, Aleš KŘENEK, Pavlína ŠPRINGEROVÁ, Matej ANTOL and Radka SVOBODOVÁ. Beyond Metadata: Leveraging Similarity Search in Molecular Dynamics Data. In 2nd BioExcel Conference on Advances in Biomolecular Simulations. 2024. Available from: https://dx.doi.org/10.5281/zenodo.14500696.
    13. KRIŠTOFÍK, Andrej, Jakub VOSTOUPAL, Kamil MALINKA, František KASL and Pavel LOUTOCKÝ. Beyond the Bugs: Enhancing Bug Bounty Programs through Academic Partnerships. Online. In ARES '24: Proceedings of the 19th International Conference on Availability, Reliability and Security. New York: Association for Computing Machinery, 2024, p. 1-8. Available from: https://dx.doi.org/10.1145/3664476.3670455.
    14. CAPANDOVÁ, Michaela, Veronika SEDLÁKOVÁ, Zbyněk VORÁČ, Hana KOTASOVÁ, Jana DUMKOVÁ, Lukáš MORÁŇ, Josef JAROŠ, Matej ANTOL, Dáša BOHAČIAKOVÁ and Aleš HAMPL. Cells, biomaterials, infrastructure; and the value of the data. In 2. Offsite Meeting of the Department of Histology and Embryology (ÚHE): Advancing Science and Collaboration. 2024. ISBN 978-80-280-0587-0.
    15. BERNHAUSER, Marek and Tomáš KUMPAN. Conodont biostratigraphy of the Líšeň Formation at the Mokrá-central quarry. In Paleozoikum 2024. 2024. ISBN 978-80-280-0498-9.
    16. SADLEK, Lukáš and Pavel ČELEDA. Cyber Key Terrain Identification Using Adjusted PageRank Centrality. Online. In Meyer, N., Grocholewska-Czuryło, A. ICT Systems Security and Privacy Protection. SEC 2023. IFIP Advances in Information and Communication Technology, vol 679. Cham: Springer, 2024, p. 293-306. ISBN 978-3-031-56325-6. Available from: https://dx.doi.org/10.1007/978-3-031-56326-3_21.
    17. HÁJEK, Adam and Aleš HORÁK. CzeGPT-2 – Training New Model for Czech Generative Text Processing Evaluated with the Summarization Task. IEEE ACCESS. UNITED STATES: IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC, 2024, vol. 2024, No 12, p. 34570-34581. ISSN 2169-3536. Available from: https://dx.doi.org/10.1109/ACCESS.2024.3371689.
    18. SVOBODA, Tomáš, Jakub ČILLÍK, Michal MIKL, Tomáš SLAVÍČEK and Radka SVOBODOVÁ. Data Management and FAIRification in MAFIL. In Czech‐BioImaging Annual Scientific Conference 2024: Imaging Principles of Life. 2024.
    19. SVOBODA, Tomáš, Adrián ROŠINEC, Tomáš RAČEK and Radka SVOBODOVÁ. Data Management of Biological Imaging Data. In ELIXIR CZ Annual Conference 2024: Data management. 2024.
    20. SVOBODA, Tomáš and Adrián ROŠINEC. Data workflows at CEITEC MU. In Setkání OS metodiků MU. 2024.
    21. HARUTYUNYAN, Suren, Eduardo CÉSAR, Anna SIKORA, Jiří FILIPOVIČ, Akash DUTTA, Ali JANNESARI and Jordi ALCARAZ. Efficient Code Region Characterization Through Automatic Performance Counters Reduction Using Machine Learning Techniques. Online. In European Conference on Parallel Processing. Madrid, Spain: Springer Nature Switzerland, 2024, p. 18-32, 14 pp. ISBN 978-3-031-69576-6. Available from: https://dx.doi.org/10.1007/978-3-031-69577-3_2.
    22. MALINKA, Kamil, Libuše VODOVÁ, Martina JANČOVÁ, Lenka SOBKOVÁ and Vladimír SCHINDLER. Evaluation of the Pedagogical Impact of the Educational Usage of 3D Printing in Czech Lower Secondary and Grammar Schools. European Journal of Educational Research. 2024, vol. 13, No 2, p. 631-649. ISSN 2165-8714.
    23. VÍTEČEK, Jan, Andrea VÍTEČKOVÁ WÜNSCHOVÁ, Sandra THALEROVÁ, Sumeet GULATI, Lukáš KUBALA, Michaela CAPANDOVÁ, Aleš HAMPL and Robert MIKULÍK. Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment. PLOS ONE. SAN FRANCISCO: PUBLIC LIBRARY SCIENCE, 2024, vol. 6, No 19, p. 1-13. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0302269.
    24. VÍTEČEK, Jan, Andrea VÍTEČKOVÁ WÜNSCHOVÁ, Sandra THALEROVÁ, Sumeet GULATI, Lukáš KUBALA, Michaela CAPANDOVÁ, Aleš HAMPL and Robert MIKULÍK. Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment. Plos one. San Francisco: Public Library of Science, 2024, vol. 19, No 6, p. 1-13. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0302269.
    25. SLANINÁKOVÁ, Terézia, Katarína GREŠOVÁ, David PROCHÁZKA, Viktória SPIŠAKOVÁ, Adrián ROŠINEC, Jakub ČILLÍK, Pavlína ŠPRINGEROVÁ, Aleš KŘENEK, Vlastislav DOHNAL, Radka SVOBODOVÁ and Matej ANTOL. Fast, structure-based searching in a large-scale protein data repository. In ELIXIR CZ Annual Conference. 2024. Available from: https://dx.doi.org/10.13140/RG.2.2.31355.53281.
    26. DAUBNER, Lukáš, Barbora BÜHNOVÁ and Tomáš PITNER. Forensic experts' view of forensic-ready software systems: A qualitative study. Journal of Software: Evolution and Process. HOBOKEN: WILEY, 2024, vol. 36, No 5, p. 1-23. ISSN 2047-7473. Available from: https://dx.doi.org/10.1002/smr.2598.
    27. DAUBNER, Lukáš, Sofija MAKSOVIĆ, Raimundas MATULEVIČIUS, Barbora BÜHNOVÁ and Tomáš SEDLÁČEK. Forensic-Ready Analysis Suite: A Tool Support for Forensic-Ready Software Systems Design. Online. In International Conference on Research Challenges in Information Science (RCIS 2024). Neuveden: Springer, 2024, p. 47–55. ISBN 978-3-031-59467-0. Available from: https://dx.doi.org/10.1007/978-3-031-59468-7_6.
    28. DAUBNER, Lukáš, Sofija MAKSOVIĆ and Tomáš SEDLÁČEK. FREAS: Forensic-Ready Analysis Suite. 2024.
    29. ŠVÁBENSKÝ, Valdemar, Jan VYKOPAL, Martin HORÁK, Martin HOFBAUER and Pavel ČELEDA. From Paper to Platform: Evolution of a Novel Learning Environment for Tabletop Exercises. Online. In Proceedings of the 29th Annual ACM Conference on Innovation and Technology in Computer Science Education (ITiCSE'24). New York, NY, USA: ACM, 2024, p. 213-219. ISBN 979-8-4007-0600-4. Available from: https://dx.doi.org/10.1145/3649217.3653639.
    30. BLECHOVÁ, Anna, Jakub HARAŠTA and František KASL. From Space Debris to Space Weaponry: A Legal Examination of Space Debris as a Weapon. In C. Kwan, L. Lindström, D. Giovannelli, K. Podinš, D. Štrucl. 2024 16th International Conference on Cyber Conflict: Over the Horizon. 1st ed. Tallinn: NATO CCDCOE Publications, 2024, p. 263-279. ISBN 978-9916-9789-4-8.
    31. JEANSON, Francis, Spencer J GIBSON, Pinar ALPER, Alexander BERNIER, J Patrick WOOLLEY, Daniel MIETCHEN, Andrzej STRUG, Regina BECKER, Pim KAMERLING, Maria del Carmen Sanchez GONZALEZ, Nancy MAH, Ann NOVAKOWSKI, Mark D WILKINSON, Oussama Mohammed BENHAMED, Annalisa LANDI, Georg Philip KROG, Heimo MÜLLER, Umar RIAZ, Colin VEAL, Petr HOLUB, Esther VAN ENCKEVORT and Anthony J BROOKES. Getting your DUCs in a row - standardising the representation of Digital Use Conditions. SCIENTIFIC DATA. London: NATURE PORTFOLIO, 2024, vol. 11, No 1, p. 1-10. ISSN 2052-4463. Available from: https://dx.doi.org/10.1038/s41597-024-03280-6.
    32. NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. GraSR: Protein structural embeddings of AlphaFold DB. 2024. Available from: https://dx.doi.org/10.48700/datst.br8aq-db495.
    33. SVOBODA, Tomáš, Adrián ROŠINEC and Ondřej FILIP. Hands-on experience with big data transfer via iRODS and Onedata. In e-INFRA CZ CONFERENCE 2024. 2024.
    34. SADLEK, Lukáš, Martin HUSÁK and Pavel ČELEDA. Hierarchical Modeling of Cyber Assets in Kill Chain Attack Graphs. Online. In 20th International Conference on Network and Service Management, CNSM 2024. IFIP Open Digital Library, IEEE Xplore, 2024. ISBN 978-3-903176-66-9.
    35. HANOUSEK, Tomáš, Terézia SLANINÁKOVÁ, Tomáš REBOK and Růžena JANOUTOVÁ. High spatial and spectral resolution dataset of hyperspectral look-up tables for 3.5 million traits and structural combinations of Central European temperate broadleaf forests. DATA IN BRIEF. NETHERLANDS: ELSEVIER, 2024, vol. 57, December 2024, 13 pp. ISSN 2352-3409. Available from: https://dx.doi.org/10.1016/j.dib.2024.111105.
    36. ŠPAČKOVÁ, Anna, Ondřej VÁVRA, Tomáš RAČEK, Václav BAZGIER, David SEHNAL, Jiří DAMBORSKÝ, Radka SVOBODOVÁ, David BEDNÁŘ and Karel BERKA. ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era. Nucleic Acids Research. Oxford University Press, 2024, vol. 52, D1, p. "D413"-"D418", 6 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad1012.
    37. KUESS, Lukas, Ernst PAUNZEN, Nikola FALTOVÁ, Daniel JADLOVSKÝ, Matúš LABAJ, Marko MESARČ, Prapti MONDAL, Michal PRIŠEGEN, Tahereh RAMEZANI, Johana SUPÍKOVÁ, Kateřina SVAČINKOVÁ, Michaela VÍTKOVÁ, Caiyun XIA, Klaus BERNHARD and Stefan HÜMMERICH. Chemically peculiar stars on the pre-main sequence. Astronomy & Astrophysics. EDP Sciences, 2024, vol. 687, July 2024, p. 1-24. ISSN 0004-6361. Available from: https://dx.doi.org/10.1051/0004-6361/202348926.
    38. SADLEK, Lukáš, Martin HUSÁK and Pavel ČELEDA. Identification of Device Dependencies Using Link Prediction. Online. In NOMS 2024 - 2024 IEEE/IFIP Network Operations and Management Symposium. Seoul, South Korea: IEEE Xplore Digital Library, 2024, p. 1-10. ISBN 979-8-3503-2794-6. Available from: https://dx.doi.org/10.1109/NOMS59830.2024.10575713.
    39. KACOVÁ, Radoslava, Zdenka DUDOVÁ, Tomáš HOUFEK, Radovan TOMÁŠIK and Roman HRSTKA. Integration, Cataloguing and FAIRification of Biobank and Clinical Data. In Europe Biobank Week Congress 2024. 2024.
    40. KÉPEŠ, Erik, Jakub VRÁBEL, Tomáš BRÁZDIL, Petr HOLUB, Pavel POŘÍZKA and Jozef KAISER. Interpreting convolutional neural network classifiers applied to laser-induced breakdown optical emission spectra. Talanta. AMSTERDAM: Elsevier, 2024, vol. 266, No 124946, p. 1-11. ISSN 0039-9140. Available from: https://dx.doi.org/10.1016/j.talanta.2023.124946.
    41. ROŠINEC, Adrián. Introduction to the new generation EGI container execution platform. In EGI Webinar programme 2024. 2024. Available from: https://dx.doi.org/10.5281/zenodo.10566759.
    42. BOU-HARB, Elias, Edgar WEIPPL, Chadi ASSI, Martin HUSÁK, Jiangshan YU and Katherine FLANIGAN. IoT Security and Provisioning in Cyber-Enabled Niche Critical Infrastructure. In IEEE Internet of Things Magazine. Volume: 7, Issue: 6. IEEE, 2024, p. 10-12. ISSN 2576-3180. Available from: https://dx.doi.org/10.1109/MIOT.2024.10737172.
    43. HARAŠTA, Jakub, Tereza NOVOTNÁ and Jaromír ŠAVELKA. It Cannot Be Right If It Was Written by AI: On Lawyers' Preferences of Documents Perceived as Authored by an LLM vs a Human. Artificial Intelligence and Law. Springer Netherlands, 2024. ISSN 0924-8463. Available from: https://dx.doi.org/10.1007/s10506-024-09422-w.
    44. HARAŠTA, Jakub, Tereza NOVOTNÁ and Jaromír ŠAVELKA. It Cannot Be Right If It Was Written by AI: On Lawyers' Preferences of Documents Perceived as Authored by an LLM vs a Human (preprint). arXiv. arXiv:2407.06798, 2024, 40 pp. Available from: https://dx.doi.org/10.48550/arXiv.2407.06798.
    45. HRŮZA, Filip, Martin GREGOR, Kristýna TULISOVÁ, Kateřina NOVÁKOVÁ, Lucia HRŮZOVÁ, Martin DVOŘÁK and Jan ZVARA. Koncepce rozvoje svazku obcí Tišnovsko (Concept of Development of the Tišnov Region Union of Municipalities). 2024.
    46. SLANINÁKOVÁ, Terézia and David PROCHÁZKA. Learned Metric Index. 2024. Available from: https://dx.doi.org/10.5281/zenodo.13860051.
    47. ŠAVELKA, Jaromír, Jakub HARAŠTA, Tereza NOVOTNÁ and Jakub MÍŠEK. Legal Knowledge and Information Systems : JURIX 2024: The Thirty-seventh Annual Conference. Amsterdan - Berlin - Washington: IOS Press, 2024, 406 pp. ISBN 978-1-64368-562-5. Available from: https://dx.doi.org/10.3233/FAIA395.
    48. HOLUB, Petr. Leveraging BBMRI-ERIC for XAI Research in Digital Pathology. In 20th European Congress on Digital Pathology 2024 (ECDP2024). 2024.
    49. NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. LMI-10: Protein structural embeddings of AlphaFold DB. 2024. Available from: https://dx.doi.org/10.48700/datst.t45hr-bcw17.
    50. NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. LMI-30: Protein structural embeddings of AlphaFold DB. 2024. Available from: https://dx.doi.org/10.48700/datst.kgb8j-r5f84.
    51. SVOBODA, Tomáš. MAFILDB - technická realizace (MAFILDB - technical implementation). In FAIR data pro uživatele CF MAFIL. 2024.
    52. HUSÁK, Martin, Darshan MANOJ and Priyanka KUMAR. Machine Learning in Intrusion Detection: An Operational Perspective. Online. 2024, 7 pp.
    53. PRIŠŤÁKOVÁ, Michaela and Jan TAJOVSKÝ. Migrace ArcMap na ArcGIS Pro (technický a uživatelský pohled) (ArcMap to ArcGIS Pro migration (technical and user perspective)). In Konference GIS Esri v ČR 2024. 2024.
    54. OHMANN, Christian, Maria PANAGIOTOPOULOU, Steve CANHAM, Petr HOLUB, Kurt MAJCEN, Gary SAUNDERS, Maddalena FRATELLI, Jing TANG, Philip GRIBBON, Reagon KARKI, Mari KLEEMOLA, Katja MOILANEN, Daan BROEDER, Walter DAELEMANS and Pieter FIVEZ. Proposal for a framework of contextual metadata in selected research infrastructures of the life sciences and the social sciences & humanities. International Journal of Metadata, Semantics and Ontologies. Inderscience Publishers, 2024, vol. 16, No 4, p. 261-277. ISSN 1744-2621.
    55. HECHT, Helge, Wudmir Yudy ROJAS VERASTEGUI, Zargham AHMAD, Aleš KŘENEK, Jana KLÁNOVÁ and Elliott James PRICE. Quantum Chemistry-Based Prediction of Electron Ionization Mass Spectra for Environmental Chemicals. Analytical chemistry. WASHINGTON: American Chemical Society, 2024, vol. 96, No 33, p. 13652-13662. ISSN 0003-2700. Available from: https://dx.doi.org/10.1021/acs.analchem.4c02589.
    56. BUČEKOVÁ, Gabriela, Viktoriia DOSHCHENKO, Aliaksei CHARESHNEU, Jana PORUBSKÁ, Michal PAJTINKA, Michal OLEKSIK, Tomáš SVOBODA, Vladimír HORSKÝ and Radka SVOBODOVÁ. Rare ring conformations in PDB: Facts or wishful thinking? bioRxiv. 2024. Available from: https://dx.doi.org/10.1101/2024.06.20.598822.
    57. GREŠOVÁ, Katarína, Tomáš RAČEK, Vlastimil MARTINEK, David ČECHÁK, Radka SVOBODOVÁ and Panagiotis ALEXIOU. RBP-Tar – a searchable database for experimental RBP binding sites. F1000Research. 2024. Available from: https://dx.doi.org/10.12688/f1000research.131014.2.
    58. VYKOPAL, Jan, Pavel ČELEDA, Valdemar ŠVÁBENSKÝ, Martin HOFBAUER and Martin HORÁK. Research and Practice of Delivering Tabletop Exercises. Online. In Proceedings of the 29th Annual ACM Conference on Innovation and Technology in Computer Science Education (ITiCSE'24). New York, NY, USA: ACM, 2024, p. 220-226. ISBN 979-8-4007-0600-4. Available from: https://dx.doi.org/10.1145/3649217.3653642.
    59. ROŠINEC, Adrián and Tomáš SVOBODA. Research Data Management at CEITEC MU. In Open Science Workshop 2024. 2024.
    60. PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jozef ČERŇANSKÝ, Jaroslav OĽHA, Matej ANTOL and Vlastislav DOHNAL. Scaling Learned Metric Index to 100M Datasets. In Edgar Chávez, Benjamin Kimia, Jakub Lokoč, Marco Patella, Jan Sedmidubsky. 17th International Conference on Similarity Search and Applications (SISAP 2024). Cham: Springer, 2024, p. 266-273. ISBN 978-3-031-75822-5. Available from: https://dx.doi.org/10.1007/978-3-031-75823-2_22.
    61. HANOUSEK, Tomáš, Terézia SLANINÁKOVÁ, Růžena JANOUTOVÁ, Marian ŠVIK, Tomáš REBOK and Lucie HOMOLOVÁ. Simulated trait and spectroscopy data to support retrieval of forest biophysical parameters from spaceborne imaging spectroscopy. In 3rd WORKSHOP ON INTERNATIONAL COOPERATION IN SPACEBORNE IMAGING SPECTROSCOPY. 2024.
    62. KRÁČMAROVÁ, Tereza, Markéta JASANSKÁ, Daniel BARTÁK, Pavel BREJCHA, Lucie ČEJKOVÁ, Johana JEŠÁTKOVÁ, Ondřej KAŠKA, Jan MARTÍNEK, Eva MEDZIHORSKÁ, Tina MIZEROVÁ, Maria PYTLOVÁ, Tomáš ŘEPA, Adéla SCHREIBEROVÁ, Kateřina SÝKOROVÁ, David ŠPŮREK, Julie VINKLOVÁ and Zuzana VRBECKÁ. Slovník mediální gramotnosti. První vydání. Brno: Nugis Finem Publishing, 2024, 120 pp. ISBN 978-80-7614-009-7.
    63. PEŠÁN, Jan, Vojtěch JUŘÍK, Alexandra RUŽIČKOVÁ, Vojtěch SVOBODA, Oto JANOUŠEK, Andrea NĚMCOVÁ, Hana BOJANOVSKÁ, Jasmína ALDABAGHOVÁ, Filip KYSLÍK, Kateřina VODIČKOVÁ, Adéla SODOMOVÁ, Patrik BARTYS, Peter CHUDÝ and Jan ČERNOCKÝ. Speech production under stress for machine learning: multimodal dataset of 79 cases and 8 signals. SCIENTIFIC DATA. London: SPRINGER NATURE, 2024, vol. 11, No 1221, p. 1-9. ISSN 2052-4463. Available from: https://dx.doi.org/10.1038/s41597-024-03991-w.
    64. ŠEJNA, Erik. Test Anxiety Among Czech Pupils in Lower-Secondary Education. Online. Studia paedagogica. Brno, 2024, vol. 29, No 2, p. 108-127. Available from: https://dx.doi.org/10.5817/SP2024-2-5.
    65. ŠEJNA, Erik. Testová úzkost a sociálně-afektivní indikátory well-beingu v nižším sekundárním vzdělávání (Test Anxiety and Social-Affective Indicators of Well-being in Lower-Secondary Education). Online. In Andrea Rozkovcová, Jakub Pivarč. Sborník příspěvků z XXXII. výroční konference České asociace pedagogického výzkumu: SPOLUPRÁCE OBORŮ PRO PODPORU KVALITY VZDĚLÁVÁNÍ. Česká asociace pedagogického výzkumu, 2024, p. 43-89. ISBN 978-80-7392-421-8.
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    2023

    1. DAUBNER, Lukáš, Raimundas MATULEVICIUS, Barbora BÜHNOVÁ, Matej ANTOL, Michal RŮŽIČKA and Tomáš PITNER. A Case Study on the Impact of Forensic-Ready Information Systems on the Security Posture. Online. In Advanced Information Systems Engineering. Cham: Springer Nature Switzerland, 2023, p. 522-538. ISBN 978-3-031-34559-3. Available from: https://dx.doi.org/10.1007/978-3-031-34560-9_31.
    2. DAUBNER, Lukáš, Matulevičius RAIMUNDAS and Barbora BÜHNOVÁ. A Model of Qualitative Factors in Forensic-Ready Software Systems. Online. In Research Challenges in Information Science: Information Science and the Connected World. Cham: Springer Nature Switzerland, 2023, p. 308-324. ISBN 978-3-031-33079-7. Available from: https://dx.doi.org/10.1007/978-3-031-33080-3_19.
    3. CALATRAVA, Amanda, Hernán ASOREY, Jan ASTALOS, Alberto AZEVEDO, Francesco BENINCASA, Ignacio BLANQUER, Martin BOBAK, Francisco BRASILEIRO, Laia CODÓ, Laura del CANO, Borja ESTEBAN, Meritxell FERRET, Josef HANDL, Tobias KERZENMACHER, Valentin KOZLOV, Aleš KŘENEK, Ricardo MARTINS, Manuel PAVESIO, Antonio Juan RUBIO-MONTERO and Juan SÁNCHEZ-FERRERO. A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications. COMPUTER SCIENCE REVIEW. NETHERLANDS: ELSEVIER, 2023, vol. 49. ISSN 1574-0137. Available from: https://dx.doi.org/10.1016/j.cosrev.2023.100571.
    4. JURÁČEK, Jaroslav, Marie BOUDNÁ, Michal STANÍK, Michaela RUČKOVÁ, Karolína TRACHTOVÁ, Hana MALČÍKOVÁ, Eva LŽIČAŘOVÁ, Dominik A BARTH, Martin PICHLER and Ondřej SLABÝ. A tissue miRNA expression pattern is associated with disease aggressiveness of localized prostate cancer. Prostate. HOBOKEN: WILEY, 2023, vol. 83, No 4, p. 340-351. ISSN 0270-4137. Available from: https://dx.doi.org/10.1002/pros.24466.
    5. PLISKA, Pavel, Mikoláš JURDA, Adriana STREJČKOVÁ, Marek TRTÍK, Patrik BAŠO, Radoslav BEŇA, Lukáš RAJNOHA, Štěpán DVOŘÁČEK, Martin ČUTA, Dominik ČERNÝ and Petra URBANOVÁ. A.D.A.P.T. Software. 2023.
    6. DAUBNER, Lukáš, Martin MACÁK, Raimundas MATULEVIČIUS, Barbora BÜHNOVÁ, Sofija MAKSOVIĆ and Tomáš PITNER. Addressing insider attacks via forensic-ready risk management. JOURNAL OF INFORMATION SECURITY AND APPLICATIONS. ENGLAND: ELSEVIER, 2023, vol. 73, March 2023, p. 103433-103449. ISSN 2214-2126. Available from: https://dx.doi.org/10.1016/j.jisa.2023.103433.
    7. HOLZINGER, Andreas, Katharina KEIBLINGER, Petr HOLUB, Kurt ZATLOUKAL and Heimo MÜLLER. AI for Life: Trends in Artificial Intelligence for Biotechnology. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, vol. 74, No 1, p. 16-24. ISSN 1871-6784. Available from: https://dx.doi.org/10.1016/j.nbt.2023.02.001.
    8. LAMOTHE, Lucie, Jennifer R B JENSEN, Hans IENASESCU, Ove J R GUSTAFSSON, Alban GAIGNARD, Dmitry REPCHEVSKY, Radka SVOBODOVÁ, Tomáš RAČEK, Adrián ROŠINEC, Matej ANTOL and Hervé MÉNAGER. An Evaluation of EDAM Coverage in the Tools Ecosystem and Prototype Integration of Galaxy and Workflowhub Systems. BioHackrXiv. 2023, p. 1-10. Available from: https://dx.doi.org/10.37044/osf.io/79kje.
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    1. SCHWARZEROVÁ, Jana, Aleš KOSTOVAL, Adam BAJGER, Lucia JAKUBÍKOVÁ, Iro PIERDOU, Lubomír POPELÍNSKÝ, K. SEDLÁŘ and Wolfram WECKWERTH. A Revealed Imperfection in Concept Drift Correction in Metabolomics Modeling. In Ewa Pietka, Pawel Badura, Jacek Kawa, Wojciech Wieclawek. Information Technology in Biomedicine: 9th International Conference, ITIB 2022. Kamien Slaski: Springer, 2022, p. 498-509. ISBN 978-3-031-09134-6. Available from: https://dx.doi.org/10.1007/978-3-031-09135-3_42.
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    2021

    1. FALTOVÁ, Nikola, Kristína KALLOVÁ, Michal PRIŠEGEN, Pavel STANĚK, Johana SUPÍKOVÁ, Caiyun XIA, K. BERNHARD, S. HÜMMERICH and Ernst PAUNZEN. A case study of ACV variables discovered in the Zwicky Transient Facility survey. Astronomy and Astrophysics. Les Ulis: EDP Sciences, 2021, vol. 656, December, p. "A125", 17 pp. ISSN 0004-6361. Available from: https://dx.doi.org/10.1051/0004-6361/202141534.
    2. MATTA, Lukáš and Martin HUSÁK. A Dashboard for Cyber Situational Awareness and Decision Support in Network Security Management. Online. In 2021 IFIP/IEEE International Symposium on Integrated Network Management (IM). Bordeaux: IEEE, 2021, p. 716-717. ISBN 978-3-903176-32-4.
    3. TÓTH, Adrián and Mouzhi GE. A Deployable Data as a Service Architecture for Enterprises. Online. In 978-989-758-504-3. PROCEEDINGS OF THE 6TH INTERNATIONAL CONFERENCE ON INTERNET OF THINGS, BIG DATA AND SECURITY (IOTBDS). SETUBAL: SCITEPRESS, 2021, p. 278-285. ISBN 978-989-758-504-3. Available from: https://dx.doi.org/10.5220/0010470702780285.
    4. BANGUI, Hind, Mouzhi GE and Barbora BÜHNOVÁ. A Hybrid Data-driven Model for Intrusion Detection in VANET. Online. In Shakshuki, E; Yasar, A. The 12th International Conference on Ambient Systems, Networks and Technologies (ANT 2021). Warsaw, Poland: Elsevier Science, 2021, p. 516-523. ISSN 1877-0509. Available from: https://dx.doi.org/10.1016/j.procs.2021.03.065.
    5. STŘELÁK, David, Amaya JIMÉNEZ-MORENO, José VILAS, Erney RAMÍREZ-APORTELA, Ruben SÁNCHEZ-GARCÍA, David MALUENDA, Javier VARGAS, David HERREROS, Estrella FERNÁNDEZ-GIMÉNEZ, Federico DE ISIDRO-GÓMEZ, Jan HORÁČEK, David MYŠKA, Martin HORÁČEK, Pablo CONESA, Yunior FONSECA-REYNA, Jorge JIMÉNEZ, Marta MARTÍNEZ, Mohamad HARASTANI, Slavica JONIĆ, Jiří FILIPOVIČ, Roberto MARABINI, José CARAZO and Carlos SORZANO. Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion. Molecules. Mayer und Muller, 2021, vol. 26, No 20, p. 1-14. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules26206224.
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    7. BANKOVIČ, Mikuláš, Vít NOVOTNÝ and Petr SOJKA. Application of Super-Resolution Models in Optical Character Recognition of Czech Medieval Texts. In Horák, Rychlý, Rambousek. Recent Advances in Slavonic Natural Language Processing (RASLAN 2021). Brno: Tribun EU, 2021, p. 11-18. ISBN 978-80-263-1670-1.
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    108. FARIA ZENI, Pedro, Michaela MEDKOVÁ, Karolína TRACHTOVÁ, Václav ŠEDA, Sonali SHARMA, Josef VEČEŘA, Laura ONDRIŠOVÁ, Miroslav BOUDNÝ, Veronika PALUŠOVÁ, Veronika ŠANDOVÁ, Daniel FILIP, Lenka KOŠŤÁLOVÁ and Marek MRÁZ. The role of long non-coding RNAs in the BCR-mediated activation of malignant B cells. In Ceitec PhD Conference. 2021.
    109. ŠVÁBENSKÝ, Valdemar and Martin UKROP. The Stack: Unplugged Activities for Teaching Computer Science. In Proceedings of the 52nd ACM Technical Symposium on Computer Science Education (SIGCSE '21). 2021. ISBN 978-1-4503-8062-1. Available from: https://dx.doi.org/10.1145/3408877.3439569.
    110. LAGRAA, Sofiane, Radu STATE, Hamida SEBA and Martin HUSÁK. The 2nd International Workshop on Graph-based network Security (GraSec 2021). 2021.
    111. ŠVÁBENSKÝ, Valdemar, Jan VYKOPAL, Daniel TOVARŇÁK and Pavel ČELEDA. Toolset for Collecting Shell Commands and Its Application in Hands-on Cybersecurity Training. Online. In 2021 IEEE Frontiers in Education Conference (FIE). New York, NY, USA: IEEE, 2021, p. 1-9. ISBN 978-1-6654-3851-3. Available from: https://dx.doi.org/10.1109/FIE49875.2021.9637052.
    112. NOVOTNÁ, Tereza and Jakub HARAŠTA. Topic Modelling of Czech Supreme Court Decisions: Evaluation of Legal Experts. In Internationales Rechtsinformatik Symposion IRIS 2021. 2021.
    113. GÁLIKOVÁ, Miriam, Valdemar ŠVÁBENSKÝ and Jan VYKOPAL. Toward Guidelines for Designing Cybersecurity Serious Games. In Proceedings of the 52nd ACM Technical Symposium on Computer Science Education (SIGCSE '21). 2021. ISBN 978-1-4503-8062-1. Available from: https://dx.doi.org/10.1145/3408877.3439568.
    114. HUSÁK, Martin. Towards a Data-Driven Recommender System for Handling Ransomware and Similar Incidents. Online. In 2021 IEEE International Conference on Intelligence and Security Informatics (ISI). San Antonio: IEEE, 2021, p. 1-6. ISBN 978-1-6654-3838-4. Available from: https://dx.doi.org/10.1109/ISI53945.2021.9624774.
    115. HUSÁK, Martin, Giovanni APRUZZESE, Shanchieh YANG and Gordon WERNER. Towards an Efficient Detection of Pivoting Activity. Online. In 2021 IFIP/IEEE International Symposium on Integrated Network Management (IM). Bordeaux: IEEE, 2021, p. 980-985. ISBN 978-3-903176-32-4.
    116. BANGUI, Hind, Mouzhi GE, Barbora BÜHNOVÁ and Le Hong TRANG. Towards Faster Big Data Analytics for Anti-Jamming Applications in vehicular ad-hoc network. Transactions on Emerging Telecommunications Technologies. ENGLAND: WILEY, 2021, vol. 32, No 10, p. 1-18. ISSN 2161-3915. Available from: https://dx.doi.org/10.1002/ett.4280.
    117. MBAREK, Bacem, Mouzhi GE and Tomáš PITNER. Trust-based Authentication for Smart Home Systems. Wireless Personal Communications. Springer, 2021, vol. 117, No 3, p. 2157-2172. ISSN 0929-6212. Available from: https://dx.doi.org/10.1007/s11277-020-07965-0.
    118. MBAREK, Bacem, Mouzhi GE and Tomáš PITNER. Trust-based Detection Strategy against Replication Attacks in IoT. Online. In Makoto Takizawa, Leonard Barolli, Donald Elmazi. The 35th International Conference on Advanced Information Networking and Applications (AINA-2021). Springer International Publi. Toronto, Canada: Springer, 2021, p. 646-656. ISBN 978-3-030-75074-9. Available from: https://dx.doi.org/10.1007/978-3-030-75075-6_53.
    119. MIDLIK, Adam, Veronika NAVRÁTILOVÁ, Tarakaramji MOTURU, Jaroslav KOČA, Radka SVOBODOVÁ and K. BERKA. Uncovering of cytochrome P450 anatomy by SecStrAnnotator. Nature Scientific Reports. London: NATURE RESEARCH, 2021, vol. 11, No 1, p. 12345-12356. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-021-91494-8.
    120. GALANSKÁ, Katarína and Kamil MALINKA. Usable Security from IT Professional's Perspective. In Cyberspace 2021. 2021.
    121. MACÁK, Martin, Daniela KRÚŽELOVÁ, Stanislav CHREN and Barbora BÜHNOVÁ. Using Process Mining for Git Log Analysis of Projects in a Software Development Course. Education and Information Technologies. 2021, vol. 26, No 5, p. 5939-5969. ISSN 1360-2357. Available from: https://dx.doi.org/10.1007/s10639-021-10564-6.
    122. ČEGAN, Jakub, Tomáš KACVINSKÝ, Zdeněk VYDRA, Martin LEBEDA, Jakub Bartolomej KOŠUTH, Petr VELAN, Milan ČERMÁK, Andrej TOMČI, Ivo NUTÁR, Martin LAŠTOVIČKA, Natálie VELECKÁ, Pavla VIZVÁRY, Vojtěch HAMERSKÝ, Daniel KOUŘIL, Ondřej BUDAY, Martin KOTLÍK, Vladimír ROHEL, Jiří SÝKORA, Michal ZVÁNOVEC, Filip GRÉGR and Petr SLAVÍK. Virtualizované prostředí pro trénink CSIRT týmu (Virtual environment for training of the CSIRT teams). 2021.
    123. MAREK, Tomáš. Vizualizace dat jako informační bariéra u nevidomých uživatelů (Data Visualization as an Information Barrier for Blind Users). ProInflow. Brno: Masarykova univerzita, 2021, vol. 13, No 2, p. 50-67. ISSN 1804-2406. Available from: https://dx.doi.org/10.5817/ProIn2021-2-4.
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    125. NOVOTNÁ, Tereza and Jakub HARAŠTA. Vyhledávání české judikatury v praxi: potřeby uživatele vs. aktuální výzkumné metody. In České právo a informační technologie 2021. 2021.
    126. LUPTÁK, Dávid, Vít NOVOTNÝ, Michal ŠTEFÁNIK and Petr SOJKA. WebMIaS on Docker: Deploying Math-Aware Search in a Single Line of Code. In Fairouz Kamareddine and Claudio Sacerdotti-Coen. Intelligent Computer Mathematics: 14th International Conference, CICM 2021, Timisoara, Romania, July 26–31, 2021, Proceedings. LNAI 12833. Timisoara, Romania: Springer, 2021, p. 159-164. ISBN 978-3-030-81096-2. Available from: https://dx.doi.org/10.1007/978-3-030-81097-9_13.
    127. NOVOTNÝ, Vít, Kristýna SEIDLOVÁ, Tereza VRABCOVÁ and Aleš HORÁK. When Tesseract Brings Friends: Layout Analysis, Language Identification, and Super-Resolution in the Optical Character Recognition of Medieval Texts. In Horák, Rychlý, Rambousek. Recent Advances in Slavonic Natural Language Processing (RASLAN 2021). Brno: Tribun EU, 2021, p. 29-39. ISBN 978-80-263-1670-1.
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    131. 4D-GRAPHS (software)
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    2020

    1. PETROVIČ, Filip, David STŘELÁK, Jana HOZZOVÁ, Jaroslav OĽHA, Richard TREMBECKÝ, Siegfried BENKNER and Jiří FILIPOVIČ. A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit. Future Generation Computer Systems. Elsevier, 2020, vol. 108, July, p. 161-177. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2020.02.069.
    2. MACÁK, Martin, Mouzhi GE and Barbora BÜHNOVÁ. A Cross-domain Comparative Study of Big Data Architectures. International Journal of Cooperative Information Systems. 2020, vol. 29, No 4, p. 1-27. ISSN 0218-8430. Available from: https://dx.doi.org/10.1142/S0218843020300016.
    3. ROSSI, Bruno. A Large-Scale Replication of Smart Grids Power Consumption Anomaly Detection. Online. In Gary Wills, Péter Kacsuk, and Victor Chang. Proceedings of the 5th International Conference on Internet of Things, Big Data and Security (IoTBDS). Setubal, Portugal: SciTePress, 2020, p. 288-295. ISBN 978-989-758-426-8. Available from: https://dx.doi.org/10.5220/0009396402880295.
    4. ČECH, Michal, Roman CHRENŠŤ, Daniel TOVARŇÁK and Tomáš PLESNÍK. Adaptér pro systém pro správu zdrojů (Asset management adapter). 2020.
    5. MBAREK, Bacem, Mouzhi GE and Tomáš PITNER. An Efficient Mutual Authentication Scheme for Internet of Things. Internet of Things Journal. ELSEVIER, 2020, vol. 9, No 1, p. 1-9. ISSN 2543-1536. Available from: https://dx.doi.org/10.1016/j.iot.2020.100160.
    6. MBAREK, Bacem, Stanislav CHREN, Bruno ROSSI and Tomáš PITNER. An Enhanced Blockchain-Based Data Management Scheme for Microgrids. Online. In Barolli, L., Amato, F., Moscato, F., Enokido, T., Takizawa, M. Web, Artificial Intelligence and Network Applications (WAINA 2020). Caserta, Italy: Springer International Publishing, 2020, p. 766-775. ISBN 978-3-030-44037-4. Available from: https://dx.doi.org/10.1007/978-3-030-44038-1_70.
    7. KOTT, Alexander, Paul THERON, Luigi MANCINI, Edlira DUSHKU, Agostino PANICO, Martin DRAŠAR, Benoit LEBLANC, Paul LOSIEWICZ, Alessandro GUARINO, Mauno PIHELGAS and Krzysztof RZADCA. An introductory preview of Autonomous Intelligent Cyber-defense Agent reference architecture, release 2.0. The Journal of Defense Modeling and Simulation: Applications, Methodology, Technology. THOUSAND OAKS: SAGE PUBLICATIONS INC, 2020, vol. 17, No 1, p. 51-54. ISSN 1548-5129. Available from: https://dx.doi.org/10.1177/1548512919886163.
    8. REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Martin DRAŠAR, Daniel TOVARŇÁK, Pavel ZEZULA, Martin MACÁK, Matúš GUOTH, Matej BABEJ, Dávid BRILLA and Martin KAŽIMÍR. ANALYZA – Datový sklad (ANALYZA – Dara Warehouse). 2020.
    9. REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Martin DRAŠAR, Jarešová MIROSLAVA, Barbora KOZLÍKOVÁ, Kristína ZÁKOPČANOVÁ, Pavel ZEZULA, Katarína FURMANOVÁ, Marko ŘEHÁČEK, Jozef BÁTRNA and Daniel PLAKINGER. ANALYZA – Vizualizační komponenta – Visilant (ANALYZA – Visualization Component – Visilant). 2020.
    10. REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Barbora KOZLÍKOVÁ, Vladimír MÍČ, Filip NÁLEPA, David NOVÁK, Daniel TOVARŇÁK, Pavel ZEZULA, Jakub PESCHEL, Kasanič DENIS, Denisa ŠRÁMKOVÁ, Erik HRICIŠÁK, Vladimír LAZÁRIK and Kristián GUTIČ. ANALYZA – Výpočetní a orchestrační subsystém (ANALYZA – Computation and Orchestration Subsystem). 2020.
    11. ARCLib (software)
      LHOTÁK, Marin, Martin DUDA, Andrea FOJTŮ, Jan HEJZL, Jan HUTAŘ, Filip KERSCH, Jana KŘÍŽOVÁ, Marek MELICHAR, Martina NEZBEDOVÁ, Miroslav PAVELKA, Eliška PAVLÁSKOVÁ, Jan POKORSKÝ, Michal PŠENIČKA, Ivana ŠLAPÁKOVÁ, Zdeněk TICHÝ, Miroslav BARTOŠEK, Jan BILWACHS, Lukáš HEJTMÁNEK, Zdeněk HRUŠKA, Václav JIROUŠEK, Pavlína KOČIŠOVÁ, Vlastimil KREJČÍŘ, Iveta LODROVÁ, Natalie OSTRÁKOVÁ, Michal RŮŽIČKA, Zdeněk VAŠEK and Petr ŽABIČKA. ARCLib. 2020.
    12. GEŠVINDR, David, Ondřej GASIOR and Barbora BÜHNOVÁ. Architecture design evaluation of PaaS cloud applications using generated prototypes: PaaSArch Cloud Prototyper tool. Journal of Systems and Software. Elsevier, 2020, vol. 169, November, p. 1-21. ISSN 0164-1212. Available from: https://dx.doi.org/10.1016/j.jss.2020.110701.
    13. HOMOLIAK, Ivan, Kamil MALINKA and Petr HANÁČEK. ASNM Datasets: A Collection of Network Attacks for Testing of Adversarial Classifiers and Intrusion Detectors. IEEE Access. PISCATAWAY: IEEE Xplore Digital Library, 2020, vol. 8, p. 112427-112453. ISSN 2169-3536. Available from: https://dx.doi.org/10.1109/ACCESS.2020.3001768.
    14. RAČEK, Tomáš, Ondřej SCHINDLER, Dominik TOUŠEK, Vladimír HORSKÝ, Karel BERKA, Jaroslav KOČA and Radka SVOBODOVÁ. Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges. Nucleic acids research. Oxford: Oxford University Press, 2020, vol. 48, W1, p. "W591"-"W596", 6 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkaa367.
    15. DUDOVÁ, Zdenka, Alice HÁLOVÁ, Dalibor VALÍK and Petr HOLUB. BBMRI-CZ as a Partner for Personalized Medicine and Translational Medical Research. In RANK 2020. 2020. ISBN 978-80-87436-17-2.
    16. HOLUB, Petr, Lukasz KOZERA, Francesco FLORINDI, Esther van ENCKEVORT, Morris SWERTZ, Robert REIHS, Andrea WUTTE, Dalibor VALÍK and Michaela Th MAYRHOFER. BBMRI-ERIC’s contributions to research and knowledge exchange on COVID-19. European Journal of Human Genetics. London: Nature Publishing Group, 2020, vol. 28, No 6, p. 728-731. ISSN 1018-4813. Available from: https://dx.doi.org/10.1038/s41431-020-0634-8.
    17. KOTUCZ, Barbora. Beauty or a Beast? Angela Carter’s Nights at the Circus Transgressing Seemingly Established Concepts of Beauty, Good, and Evil. In 11th Brno International Conference of English, American and Canadian Studies : "Breaking the Boundaries : In Between Texts, Cultures and Conventions", 12–14 February, 2020, Brno, Faculty of Arts, Masaryk University. 2020.
    18. VYKOPAL, Jan, Valdemar ŠVÁBENSKÝ and Ee-Chien CHANG. Benefits and Pitfalls of Using Capture The Flag Games in University Courses. Online. In Proceedings of the 51st ACM Technical Symposium on Computer Science Education (SIGCSE '20). New York, NY, USA: ACM, 2020, p. 752-758. ISBN 978-1-4503-6793-6. Available from: https://dx.doi.org/10.1145/3328778.3366893.
    19. MACÁK, Martin, Hind BANGUI, Barbora BÜHNOVÁ, András J. MOLNÁR and Csaba István SIDLÓ. Big Data Processing Tools Navigation Diagram. Online. In Proceedings of the 5th International Conference on Internet of Things, Big Data and Security - Volume 1: IoTBDS. Setubal, Portugal: SciTePress, 2020, p. 304-312. ISBN 978-989-758-426-8. Available from: https://dx.doi.org/10.5220/0009406403040312.
    20. SEHNAL, David, Sebastian BITTRICH, Sameer VELANKAR, Jaroslav KOČA, Radka SVOBODOVÁ, Stephen K. BURLEY and Alexander S. ROSE. BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management. PLoS Computational Biology. San Francisco: Public Library of Science, 2020, vol. 16, No 10, p. 1-13. ISSN 1553-734X. Available from: https://dx.doi.org/10.1371/journal.pcbi.1008247.
    21. KYSELÁK, Martin, Jan MASCHKE, Marco PANASCI, Karel SLAVÍČEK, Otto DOSTÁL, David GRENAR, Milan ČUČKA and Miloslav FILKA. Birefringence influence on polarization changes and frequency on optical fiber. Online. In Proceedings of SPIE. online: SPIE, 2020, p. 1-13. ISBN 978-1-5106-3889-1. Available from: https://dx.doi.org/10.1117/12.2573696.
    22. MBAREK, Bacem, Mouzhi GE and Tomáš PITNER. Blockchain-based Access Control for IoT in Smart Home Systems. Online. In Proceedings of the 31st International Conference on Database and Expert Systems Applications - DEXA 2020. Bratislava, Slovakia: Springer, 2020, p. 17-32. ISBN 978-3-030-59050-5. Available from: https://dx.doi.org/10.1007/978-3-030-59051-2_2.
    23. CIOROAICA, Emilia, Barbora BÜHNOVÁ, Thomas KUHN and Daniel SCHNEIDER. Building trust in the untrustable. Online. In Proceedings of the ACM/IEEE 42nd International Conference on Software Engineering: Software Engineering in Society. USA: ACM, 2020, p. 21-24. ISBN 978-1-4503-7125-4. Available from: https://dx.doi.org/10.1145/3377815.3381378.
    24. FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE/ACM Transactions on Computational Biology and Bioinformatics. Los Alamitos: IEEE Computer Society, 2020, vol. 17, No 5, p. 1625-1638. ISSN 1545-5963. Available from: https://dx.doi.org/10.1109/TCBB.2019.2907492.
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    99. LAŠTOVIČKA, Martin, Stanislav ŠPAČEK, Petr VELAN and Pavel ČELEDA. Using TLS Fingerprints for OS Identification in Encrypted Traffic. Online. In 2020 IEEE/IFIP Network Operations and Management Symposium (NOMS 2020). Budapešť, Maďarsko: IEEE Xplore Digital Library, 2020, p. 1-6. ISBN 978-1-7281-4973-8. Available from: https://dx.doi.org/10.1109/NOMS47738.2020.9110319.
    100. HRUBÁ, Marika. Úvod do library advocacy pro veřejné knihovny : e-learningový kurz. Online. 2020.
    101. BUČEKOVÁ, Gabriela, Michal PAJTINKA and Radka SVOBODOVÁ. Validation of cycle conformation in Protein Data Bank. In ELIXIR CZ Annual Conference 2020. 2020.
    102. DAUBNER, Lukáš, Martin MACÁK, Barbora BÜHNOVÁ and Tomáš PITNER. Verification of Forensic Readiness in Software Development: A Roadmap. Online. In Proceedings of the 35th Annual ACM Symposium on Applied Computing. New York, NY, USA: Association for Computing Machinery, 2020, p. 1658-1661. ISBN 978-1-4503-6866-7. Available from: https://dx.doi.org/10.1145/3341105.3374094.
    103. SEHNAL, David, Radka SVOBODOVÁ, K. BERKA, Lukáš PRAVDA, Adam MIDLIK and Jaroslav KOČA. Visualization and Analysis of Protein Structures with LiteMol Suite. Online. In STRUCTURAL BIOINFORMATICS: METHODS AND PROTOCOLS. TOTOWA: HUMANA PRESS INC, 2020, p. 1-13. 2112. ISBN 978-1-0716-0270-6. Available from: https://dx.doi.org/10.1007/978-1-0716-0270-6_1.
    104. MATTA, Lukáš and Martin HUSÁK. Webová aplikace pro vizualizaci bezpečnostní situace v počítačové síti (Web application for the visualization of security situation in computer network). 2020.
    105. ŠVÁBENSKÝ, Valdemar, Jan VYKOPAL and Pavel ČELEDA. What Are Cybersecurity Education Papers About? A Systematic Literature Review of SIGCSE and ITiCSE Conferences. Online. In Proceedings of the 51st ACM Technical Symposium on Computer Science Education (SIGCSE '20). New York, NY, USA: ACM, 2020, p. 2-8. ISBN 978-1-4503-6793-6. Available from: https://dx.doi.org/10.1145/3328778.3366816.
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    2019

    1. VODÁK, Rostislav, Michal BÍL, Tomáš SVOBODA, Zuzana KŘIVÁNKOVÁ, Jan KUBEČEK, Tomáš REBOK and Petr HLINĚNÝ. A deterministic approach for rapid identification of the critical links in networks. PLOS ONE. United States: Public Library of Science, 2019, vol. 14, No 7, p. 1-18. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0219658.
    2. STŘELÁK, David, Carlos Óscar S. SORZANO, José María CARAZO and Jiří FILIPOVIČ. A GPU acceleration of 3-D Fourier reconstruction in cryo-EM. The International Journal of High Performance Computing Applications. SAGE Publishing, 2019, vol. 33, No 5, p. 948-959. ISSN 1094-3420. Available from: https://dx.doi.org/10.1177/1094342019832958.
    3. BANGUI, Hind, Mouzhi GE and Barbora BÜHNOVÁ. A Research Roadmap of Big Data Clustering Algorithms for Future Internet of Things. International Journal of Organizational and Collective Intelligence. IGI, 2019, vol. 9, No 2, p. 16-30. ISSN 1947-9344. Available from: https://dx.doi.org/10.4018/IJOCI.2019040102.
    4. GE, Mouzhi, Fabio PERSIA and Daniela D'AURIA. Advanced Recommender Systems by Exploiting Social Networks. In Proceedings of the IEEE International Conference on Humanized Computing and Communication. Laguna Hills, CA, USA: IEEE, 2019, p. 118-125. ISBN 978-1-72814-125-1. Available from: https://dx.doi.org/10.1109/HCC46620.2019.00025.
    5. HUSÁK, Martin and Jaroslav KAŠPAR. AIDA Framework: Real-Time Correlation and Prediction of Intrusion Detection Alerts. Online. In Proceedings of the 14th International Conference on Availability, Reliability and Security (ARES 2019). New York: ACM, 2019, p. "81:1"-"81:8", 8 pp. ISBN 978-1-4503-7164-3. Available from: https://dx.doi.org/10.1145/3339252.3340513.
    6. TOVARŇÁK, Daniel. An Algorithm for Message Type Discovery in Unstructured Log Data. Online. In Proceedings of the 14th International Conference on Software Technologies - Volume 1: ICSOFT. Prague: SciTePress, 2019, p. 665-676. ISBN 978-989-758-379-7. Available from: https://dx.doi.org/10.5220/0007919806650676.
    7. QISHAN, Yang, Mouzhi GE and Markus HELFERT. Analysis of Data Warehouse Architectures: Modeling and Classification. In Proceedings of the 21st International Conference on Enterprise Information Systems. Crete, Greece: SciTePress, 2019, p. 604-611. ISBN 978-989-758-372-8. Available from: https://dx.doi.org/10.5220/0007728006040611.
    8. SMRČKA, Martin, Alena KOPKOVÁ, Jiří ŠÁNA, Marek VEČEŘA, J OPPELT, Karolína TRACHTOVÁ, R JANČÁLEK, Pavel FADRUS and Ondřej SLABÝ. Analysis of microRNA levels in cerebrospinal fluid of patients with primary brain tumors and metastases. In 2019 WFNS Special World Congress, 9. – 12. 9. 2019, Peking, Čína. 2019.
    9. ŠVÁBENSKÝ, Valdemar. Analyzing User Interactions with Cybersecurity Games. In Proceedings of the 50th ACM Technical Symposium on Computer Science Education (SIGCSE’19). 2019. ISBN 978-1-4503-5890-3. Available from: https://dx.doi.org/10.1145/3287324.3293717.
    10. VELAN, Petr and Pavel ČELEDA. Application-Aware Flow Monitoring. Online. In 2019 IFIP/IEEE Symposium on Integrated Network and Service Management (IM). Washington DC, USA: IEEE, 2019, p. 701-706. ISBN 978-1-72810-618-2.
    11. BÜHNOVÁ, Barbora, Lucie JURYSTOVÁ and Dita PŘIKRYLOVÁ. Assisting women in career change towards software engineering: experience from Czechitas NGO. Online. In Proceedings of the 13th European Conference on Software Architecture - Volume 2. New York, NY, USA: ACM, 2019, p. 88-93. ISBN 978-1-4503-7142-1. Available from: https://dx.doi.org/10.1145/3344948.3344967.
    12. RAČEK, Tomáš, Ondřej SCHINDLER, Vladimír HORSKÝ, Jaroslav KOČA, Dominik TOUŠEK and Radka SVOBODOVÁ VAŘEKOVÁ. AtomicChargeCalculator II. In ELIXIR CZ Annual Conference 2019. 2019. ISBN 978-80-86241-61-6.
    13. SMERIGA, Juraj and Tomáš JIRSÍK. Behavior-Aware Network Segmentation using IP Flows. Online. In Proceedings of the 14th International Conference on Availability, Reliability and Security. New York, NY, USA: ACM, 2019, p. 1-9. ISBN 978-1-4503-7164-3. Available from: https://dx.doi.org/10.1145/3339252.3339265.
    14. SEDMIDUBSKÝ, Jan, Petr ELIÁŠ and Pavel ZEZULA. Benchmarking Search and Annotation in Continuous Human Skeleton Sequences. Online. In International Conference on Multimedia Retrieval (ICMR). New York, NY, USA: ACM, 2019, p. 38-42. ISBN 978-1-4503-6765-3. Available from: https://dx.doi.org/10.1145/3323873.3325013.
    15. REBOK, Tomáš. Big Data - overview, basic concepts and practical use in research. In Alliance4Life 5th project meeting. 2019.
    16. LIPČÁK, Peter, Martin MACÁK and Bruno ROSSI. Big Data Platform for Smart Grids Power Consumption Anomaly Detection. Online. In Proceedings of the 2019 Federated Conference on Computer Science and Information Systems. New York: IEEE, 2019, p. 771-780. ISBN 978-1-5386-8005-6. Available from: https://dx.doi.org/10.15439/2019F210.
    17. BOU-HARB, Elias, Martin HUSÁK, Mourad DEBBABI and Chadi ASSI. Big Data Sanitization and Cyber Situational Awareness: A Network Telescope Perspective. IEEE Transactions on Big Data. IEEE, 2019, vol. 5, No 4, p. 439-453. ISSN 2332-7790. Available from: https://dx.doi.org/10.1109/TBDATA.2017.2723398.
    18. MÍČ, Vladimír, David NOVÁK and Pavel ZEZULA. Binary Sketches for Secondary Filtering. ACM Transactions on Information Systems. New York: ACM Press, 2019, vol. 37, No 1, p. "1:1"-"1:28", 28 pp. ISSN 1046-8188. Available from: https://dx.doi.org/10.1145/3231936.
    19. ANTOL, Matej and Vlastislav DOHNAL. BM-index: Balanced Metric Space Index based on Weighted Voronoi Partitioning. In Lecture Notes in Computer Science. Advances in Databases and Information Systems, 23th East European Conference, ADBIS 2019. LNCS 11695. Cham: Springer International Publishing, 2019, p. 337-353. ISBN 978-3-030-28729-0. Available from: https://dx.doi.org/10.1007/978-3-030-28730-6_21.
    20. KOVÁŘOVÁ, Pavla and Martin KRČÁL. Budoucnost knihoven. In Duha: Informace o knihách a knihovnách z Moravy. Brno: Moravská zemská knihovna, 2019. 33. ISSN 1804-4255.
    21. ŠTOURAČ, Jan, O. VAVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, Gabriela Filipa FONSECA PINTO, Andrea SCHENKMAYEROVÁ, Jiří DAMBORSKÝ and David BEDNÁŘ. Caver web: identification of tunnels and channels in proteins and analysis of ligand transport. In European Biotechnology Congress. 2019. ISSN 0168-1656. Available from: https://dx.doi.org/10.1016/j.jbiotec.2019.05.251.
    22. ŠTOURAČ, Jan, Ondřej VÁVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, José Gaspar RANGEL PAMPLONA PIZARRO PINTO, Jan BREZOVSKÝ, Jiří DAMBORSKÝ and David BEDNÁŘ. Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic acids research. Oxford: Oxford University Press, 2019, vol. 47, W1, p. 414-422. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkz378.
    23. VÁVRA, Ondřej, Jiří FILIPOVIČ, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Jan ŠTOURAČ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinformatics. Oxford: Oxford University Press, 2019, vol. 35, No 23, p. 4986-4993. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btz386.
    24. DRAŠAR, Martin, Ádám RUMAN, Adam SKRÁŠEK and Matúš GALBA. CEP-Server: Software pro vyhodnocování a dotazování komplexních událostí v doméně ITOA (CEP-Server: Software for evaluation and querying of complex events in the ITOA domain). 2019.
    25. KOPKOVÁ, Alena, Jiří ŠÁNA, Táňa MACHÁČKOVÁ, Marek VEČEŘA, Lenka RADOVÁ, Karolína TRACHTOVÁ, Václav VYBÍHAL, Martin SMRČKA, Tomáš KAZDA, Ondřej SLABÝ and Pavel FADRUS. Cerebrospinal Fluid MicroRNA Signatures as Diagnostic Biomarkers in Brain Tumors. Cancers. BASEL: MDPI, 2019, vol. 11, No 10, p. 1-12. ISSN 2072-6694. Available from: https://dx.doi.org/10.3390/cancers11101546.
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    27. ŠPAČEK, Stanislav, Martin LAŠTOVIČKA, Martin HORÁK and Tomáš PLESNÍK. Current Issues of Malicious Domains Blocking. Online. In 2019 IFIP/IEEE Symposium on Integrated Network and Service Management (IM). Washington DC: IEEE, 2019, p. 551-556. ISBN 978-1-7281-0618-2.
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    117. BÜHNOVÁ, Barbora and Dita PŘIKRYLOVÁ. Women Want to Learn Tech: Lessons from the Czechitas Education Project. Online. In Proceedings of the 2nd International Workshop on Gender Equality in Software Engineering. USA: IEEE Press, 2019, p. 25-28. ISBN 978-1-72812-245-8. Available from: https://dx.doi.org/10.1109/GE.2019.00013.

    2018

    1. GE, Mouzhi and Fabio PERSIA. A Generalized Evaluation Framework for Multimedia Recommender Systems. International Journal of Semantic Computing. World Scientific, 2018, vol. 12, No 4, p. 541-557. ISSN 1793-351X. Available from: https://dx.doi.org/10.1142/S1793351X18500046.
    2. LIPČÁK, Jakub and Bruno ROSSI. A Large-Scale Study on Source Code Reviewer Recommendation. Online. In 44th Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2018. Not specified: IEEE, 2018, p. 378-387. ISBN 978-1-5386-7383-6. Available from: https://dx.doi.org/10.1109/SEAA.2018.00068.
    3. PAZÚRIKOVÁ, Jana, Jaroslav OĽHA, Aleš KŘENEK and Vojtěch SPIWOK. Acceleration of Mean Square Distance Calculations with Floating Close Structure in Metadynamics Simulations. arXiv, 2018, 22 pp. arXiv:1801.02362.
    4. KIŠŠ, Filip and Bruno ROSSI. Agile to Lean Software Development Transformation: A Systematic Literature Review. Online. In 2018 Federated Conference on Computer Science and Information Systems (FedCSIS). Not specified: IEEE, 2018, p. 969-973. ISBN 978-83-949419-5-6. Available from: https://dx.doi.org/10.15439/2018F53.
    5. FILA, Milan, Jana MARTINCOVÁ, Jan SIKORA and Jakub KUČERA. Analýza mobility obyvatel ZSJ města Brna s využitím dat mobilních operátorů (Mobility analysis of the residents in basic settlement units in Brno using data from mobile operators). In Geografie na v zostupe? 17. kongres Slovenskej geografickej spoločnosti / 24. zjazd Českej geografickej společnosti. 2018.
    6. HARAŠTA, Jakub, Jaromír ŠAVELKA, František KASL, Adéla KOTKOVÁ, Pavel LOUTOCKÝ, Jakub MÍŠEK, Daniela PROCHÁZKOVÁ, Helena PULLMANNOVÁ, Petr SEMENIŠÍN, Tamara ŠEJNOVÁ, Nikola ŠIMKOVÁ, Michal VOSINEK, Lucie ZAVADILOVÁ and Jan ZIBNER. Annotated Corpus of Czech Case Law for Reference Recognition Tasks. Online. In Sojka, P., Horák, A., Kopeček, I., Pala, K. Text, Speech, and Dialogue: 21st International Conference. Cham: Springer Nature Switzerland AG, 2018, p. 239-250. ISBN 978-3-030-00793-5. Available from: https://dx.doi.org/10.1007/978-3-030-00794-2_26.
    7. HUSÁK, Martin, Nataliia NESHENKO, Morteza SAFAEI POUR, Elias BOU-HARB and Pavel ČELEDA. Assessing Internet-wide Cyber Situational Awareness of Critical Sectors. Online. In Proceedings of the 13th International Conference on Availability, Reliability and Security. Hamburg: ACM, 2018, p. "29:1"-"29:6", 6 pp. ISBN 978-1-4503-6448-5. Available from: https://dx.doi.org/10.1145/3230833.3230837.
    8. GE, Mouzhi, Hind BANGUI and Barbora BÜHNOVÁ. Big Data for Internet of Things: A Survey. Future Generation Computer Systems. Elsevier, 2018, vol. 87, No 1, p. 601-614. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2018.04.053.
    9. TRACHTOVÁ, Karolína, Jan OPPELT, Kateřina AMRUZ ČERNÁ and Marek MRÁZ. Bioinformatic analysis of microRNAs and long non-coding RNAs in malignant B cells. In RNA and Disease, Uppsala, Sweden. 2018.
    10. RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Dan POLANSKÝ, Karel BERKA and Jaroslav KOČA. bio.tools Sum – tool for exploration of summary information about bioinformatics services in bio.tools. In F1000Research. 2018. Available from: https://dx.doi.org/10.7490/f1000research.1115564.1.
    11. KASL, František. Blockchain, společenská smlouva digitálního věku? (Blockchain, social contract of the digital age?). Revue pro právo a technologie. Masarykova univerzita, 2018, vol. 9, No 17, p. 3-18. ISSN 1804-5383. Available from: https://dx.doi.org/10.5817/RPT2018-1-1.
    12. RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. CCL - Charge Calculation Language. In ELIXIR CZ Annual Conference 2018. 2018. ISBN 978-80-86241-60-9.
    13. LINDEN, Mikael, Michal PROCHÁZKA, Ilkka LAPPALAINEN, Dominik František BUČÍK, Pavel VYSKOČIL, Martin KUBA, Sami SILÉN, Peter BELMANN, Alexander SCZYRBA, Steven NEWHOUSE, Luděk MATYSKA and Tommi NYRÖNEN. Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research. F1000 Research Ltd., 2018, vol. 7, No 2018, p. 1-16. ISSN 2046-1402. Available from: https://dx.doi.org/10.12688/f1000research.15161.1.
    14. KOMÁRKOVÁ, Jana, Lukáš SADLEK and Martin LAŠTOVIČKA. Community Based Platform for Vulnerability Categorization. Online. In NOMS 2018 - 2018 IEEE/IFIP Network Operations and Management Symposium. Taipei, Taiwan: IEEE Xplore Digital Library, 2018, p. nestránkováno, 2 pp. ISBN 978-1-5386-3416-5. Available from: https://dx.doi.org/10.1109/NOMS.2018.8406125.
    15. KNÍŽEK, Jiří, Lubomír PAVLIŠKA, Václav PROCHÁZKA, Adéla VRTKOVÁ, Ladislav BERÁNEK, Pavel BOUCHAL, Bořivoj VOJTĚŠEK, Rudolf NENUTIL and Martin KUBA. Computation of Identification of a Gnostical Regression Model, Robust to Both Input and Output Disturbances with the Help of Parallel Computing–Basic Version. International Journal of Mathematics and Computation™. CESER, 2018, vol. 29, No 2, p. 29-58. ISSN 0974-5718.
    16. SUCHÁNKOVÁ, Pavla and Radka SVOBODOVÁ VAŘEKOVÁ. Connection of glycoinformatics databases with Pubchem. In ENBIK. 2018. ISBN 978-80-7592-017-1.
    17. KLODWIG, Jakub. Cookies nowadays situation. In Cyberspace 2018. 2018.
    18. PORTESI, Silvia, Václav STUPKA, Philip ANDERSON, François BEAUVOIS, Efthymios LALAS, Catalin PATRASCU, Andreas SFAKIANAKIS, Silvia SIGNORATO and Koen VAN IMPE. Cooperation between CSIRTs and Law Enforcement: interaction with the Judiciary. Greece: European Union Agency for Network and Information Security, 2018, 102 pp. ISBN 978-92-9204-259-2. Available from: https://dx.doi.org/10.2824/274312.
    19. KOMÁRKOVÁ, Jana, Martin HUSÁK, Martin LAŠTOVIČKA and Daniel TOVARŇÁK. CRUSOE: Data Model for Cyber Situation Awareness. Online. In Proceedings of the 13th International Conference on Availability, Reliability and Security. Hamburg: ACM, 2018, p. "36:1"-"36:10", 10 pp. ISBN 978-1-4503-6448-5. Available from: https://dx.doi.org/10.1145/3230833.3232798.
    20. cuFFTAdvisor (software)
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    22. MINISTR, Jan, Tomáš PITNER and Nikola ŠIMKOVÁ. Cybersecurity Qualifications. Online. In Ministr Jan, Tvrdíková Milena. Proceedings of the 21st International Conference on Information Technology for Practice. Ostrava: VŠB-Technical University of Ostrava, 2018, p. 141-146. ISBN 978-80-248-4196-0.
    23. LOUTOCKÝ, Pavel, Jakub MÍŠEK and František KASL. Czech Republic. Online. In J.L. da Cruz Vilaça, R. L. Vasconcelos, M. Gorjão-Henriques, A. Saavedra. The internal market and the digital economy: XXVIII FIDE Congress Lisbon/Estoril (23-26 may 2018) Congress proceedings Vol. 1. Coimbra: Almedina, 2018, p. 285-315. Congress proceedings Vol. 1. ISBN 978-972-40-7478-8.
    24. MÍŠEK, Jakub. Data protection impact assessment before open data publication. In IRIS 2018 Internationales Rechtsinformatiksymposium. 2018.
    25. YANG, Qishan, Mouzhi GE and Markus HELFERT. Data Quality Problems in TPC-DI Based Data Integration Processes. Online. In Enterprise Information Systems. Germany: Springer Lecture Notes in Business Information Processing, 2018, p. 57-73. 321. ISBN 978-3-319-93374-0. Available from: https://dx.doi.org/10.1007/978-3-319-93375-7_4.
    26. NESHENKO, Nataliia, Martin HUSÁK, Elias BOU-HARB, Pavel ČELEDA, Sameera AL-MULLA and Claude FACHKHA. Data-Driven Intelligence for Characterizing Internet-scale IoT Exploitations. Online. In 2018 IEEE Globecom Workshops. Abu Dhabi: IEEE, 2018, p. 1-7. ISBN 978-1-5386-4920-6. Available from: https://dx.doi.org/10.1109/GLOCOMW.2018.8644468.
    27. RUSŇÁK, Vít, Caroline APPERT, Olivier CHAPUIS and Emmanuel PIETRIGA. Designing Coherent Gesture Sets for Multi-scale Navigation on Tabletops. Online. In Proceedings of the 2018 CHI Conference on Human Factors in Computing Systems. ACM, 2018, 12 pp. ISBN 978-1-4503-5620-6. Available from: https://dx.doi.org/10.1145/3173574.3173716.
    28. LORENZ, Michal and Veronika WÖLFELOVÁ. Digitální pedagogika v akademické knihovně: informační vzdělávání pro digitální humanitní vědy (Digital Pedagogy in Academic Library: Information Education for Digital Humanities). 2018.
    29. KASL, František and Pavel LOUTOCKÝ. Distanční výkon práv u obchodních společností při využití elektronických prostředků (The distance performance of the rights in the case of companies with the help of electronic means). In COFOLA 2018. 2018.
    30. TROUBIL, Pavel, Hana RUDOVÁ and Petr HOLUB. Dynamic Reconfiguration in Multigroup Multicast Routing under Uncertainty. Journal of Heuristics. Springer, 2018, vol. 24, No 3, p. 395-423. ISSN 1381-1231. Available from: https://dx.doi.org/10.1007/s10732-017-9339-8.
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    34. RAČEK, Tomáš, Ondřej SCHINDLER, Radka SVOBODOVÁ VAŘEKOVÁ and Jaroslav KOČA. Empirical methods for calculation of partial atomic charges – applicability for proteins? In ENBIK2018. 2018. ISBN 978-80-7592-017-1.
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    40. OŠLEJŠEK, Radek, Jan VYKOPAL, Karolína BURSKÁ and Vít RUSŇÁK. Evaluation of Cyber Defense Exercises Using Visual Analytics Process. Online. In Proceedings of the 48th IEEE Frontiers in Education Conference (FIE'18). San Jose, California, USA: IEEE, 2018, p. 1-9. ISBN 978-1-5386-1173-9. Available from: https://dx.doi.org/10.1109/FIE.2018.8659299.
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    69. PETERLÍK, Igor, David SVOBODA, Vladimír ULMAN, Dmitry SOROKIN and Martin MAŠKA. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia. Online. In Simulation and Synthesis in Medical Imaging. Cham: Springer, 2018, p. 71-79. ISBN 978-3-030-00535-1. Available from: https://dx.doi.org/10.1007/978-3-030-00536-8_8.
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    104. HANZELKA, Jan and František KASL. Sekuritizace a právní nástroje pro boj s projevy nenávisti na internetu v Německu : O diskurzu od pojetí platforem sociálních médií jako „nástrojů zneužívaných k šíření extremismu“ k vnímání jejich „odpovědnosti za projevy nenávisti“. (Securitization and legal instruments for combat of hate speech on the internet in Germany: About the discourse from the perception of the social media as "tools abused for dissemination of extremism" to undertanding of their "liability for hate speech"). Acta Politologica. Praha: Fakulta sociálních věd Univerzity Karlovy, 2018, vol. 10, No 3, p. 20-46. ISSN 1804-1302. Available from: https://dx.doi.org/10.14712/1803-8220/15_2018.
    105. KUČERA, Adam and Tomáš PITNER. Semantic BMS: Allowing usage of building automation data in facility benchmarking. Advanced Engineering Informatics. 2018, vol. 35, January, p. 69-84. ISSN 1474-0346. Available from: https://dx.doi.org/10.1016/j.aei.2018.01.002.
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    111. KOZEL, Jiří, Pavel GROCHAL, Ludvík ADAMEC and Jan SIKORA. System for import, harmonisation and aggregation of data collected from Big Data sources. 2018.
    112. PAPOUŠEK, Dalibor, Vojtěch KAŠE, Zdeněk POSPÍŠIL, Adam MERTEL, Jan FOUSEK and Eva VÝTVAROVÁ. Šíření křesťanství v antickém Středomoří (The Spread of Christianity in the Ancient Mediterranean). In Kognice a umělý život, Brno (30.5. - 1.6. 2018). 2018.
    113. CHALUPA, Aleš, Tomáš GLOMB, Adam MERTEL, Eva VÝTVAROVÁ, Zdeněk STACHOŇ, Zdeněk POSPÍŠIL and Jan FOUSEK. Šíření „orientálních kultů“ po cestách starověkého Středomoří : Případové studie egyptských kultů a Mithraismu (The Spread of "Oriental Cults" in the Ancient Mediterranean : The Case of Egyptian Cults and Mithraism). In Kognice a umělý život 2018, Brno, 30.5.-1.6.2018. 2018.
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    117. VYKOPAL, Jan, Radek OŠLEJŠEK, Karolína BURSKÁ and Kristína ZÁKOPČANOVÁ. Timely Feedback in Unstructured Cybersecurity Exercises. Online. In Proceedings of Special Interest Group on Computer Science Education, Baltimore, Maryland, USA, February 21–24, 2018(SIGCSE’18). New York, NY, USA: ACM, 2018, p. 173-178. ISBN 978-1-4503-5103-4. Available from: https://dx.doi.org/10.1145/3159450.3159561.
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    119. THERON, Paul, Alexander KOTT, Martin DRAŠAR, Krzysytof RZADCA, Benoît LEBLANC, Mauno PIHELGAS, Luigi MANCINI and Agostino PANICO. Towards an active, autonomous and intelligent cyber defense of military systems: The NATO AICA reference architecture. Online. In 2018 International Conference on Military Communications and Information Systems (ICMCIS). Warsaw, Poland: IEEE, 2018, p. 1-9. ISBN 978-1-5386-4559-8. Available from: https://dx.doi.org/10.1109/ICMCIS.2018.8398730.
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    2017

    1. PROYNOVA, Rumyana, Diogo ALEXANDRE, Martin LABLANS, David VAN ENCKEVORT, Sebastian MATE, Niina EKLUND, Kaisa SILANDER, Michael HUMMEL, Petr HOLUB and Frank ÜCKERT. A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples. Stud Health Technol Inform. Netherlands: IOS Press, 2017, vol. 243, p. 75-79, 6 pp. ISSN 0926-9630. Available from: https://dx.doi.org/10.3233/978-1-61499-808-2-75.
    2. HUSÁK, Martin and Milan ČERMÁK. A Graph-based Representation of Relations in Network Security Alert Sharing Platforms. Online. In Prosper Chemouil, Edmundo Monteiro, Marinos Charalambides, Edmundo Madeira, Paulo Simões, Stefano Secci, Luciano Paschoal Gaspary, Carlos Raniery P. dos Santos. 2017 IFIP/IEEE Symposium on Integrated Network and Service Management (IM). Lisbon: IEEE, 2017, p. 891-892. ISBN 978-3-901882-89-0. Available from: https://dx.doi.org/10.23919/INM.2017.7987399.
    3. ELIÁŠ, Petr, Jan SEDMIDUBSKÝ and Pavel ZEZULA. A Real-Time Annotation of Motion Data Streams. In 19th IEEE International Symposium on Multimedia. Neuveden: IEEE Computer Society, 2017, p. 154-161. ISBN 978-1-5386-2937-6. Available from: https://dx.doi.org/10.1109/ISM.2017.29.
    4. GE, Mouzhi and Fabio PERSIA. A Survey of Multimedia Recommender Systems: Challenges and Opportunities. International Journal of Semantic Computing. World Scientific Publishing, 2017, vol. 11, No 3, p. 411-428. ISSN 1793-351X. Available from: https://dx.doi.org/10.1142/S1793351X17500039.
    5. HELFERT, Markus and Mouzhi GE. A Tool for Demonstrating the Data Quality Bullwhip Effect. In Proceedings of the Innovative Teaching Approaches in Business Informatics. Wroclaw, Poland: IEEE, 2017.
    6. ŠPAČEK, Stanislav, Pavel ČELEDA, Martin DRAŠAR and Martin VIZVÁRY. Analyzing an Off-the-Shelf Surveillance Software: Hacking Team Case Study. In Jaroslav Dočkal, Milan Jirsa, Josef Kaderka. SPI 2017 - Security and Protection of Information 2017. Brno: Univerzita obrany, 2017, p. 143-158. ISBN 978-80-7231-414-0.
    7. BURIAN, Ivan. Architektura a zkušenosti s resortními IS OVŠ MŠMT (Architecture and experience with departmental information systems of the department of higher education at the Ministry of Education). In Sborník příspěvků z 51. konference EurOpen.CZ. 2017. ISBN 978-80-86583-32-7.
    8. GE, Mouzhi and Theodoros CHONDROGIANNIS. Assessing the Quality of Spatio-textual Datasets in the Absence of Ground Truth. In Proceedings of the 21st European Conference on Advances in Databases and Information Systems. Cham: Springer, 2017, p. 12-20. ISBN 978-3-319-67161-1. Available from: https://dx.doi.org/10.1007/978-3-319-67162-8_2.
    9. FILIPOVIČ, Jiří, Filip PETROVIČ and Siegfried BENKNER. Autotuning of OpenCL Kernels with Global Optimizations. Online. In 1st Workshop on Autotuning and Adaptivity Approaches for Energy Efficient HPC Systems (ANDARE'2017). Portland (USA): ACM, 2017, p. nestránkováno, 6 pp. ISBN 978-1-4503-5363-2. Available from: https://dx.doi.org/10.1145/3152821.3152877.
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    81. ROČEK, Aleš, Michal JAVORNÍK, Karel SLAVÍČEK and Otto DOSTÁL. Reversible Watermarking in Medical Imaging with Zero Distortion in ROI. Online. In Proceedings of 24th IEEE International Conference on Electronics, Circuits and Systems (ICECS 2017). New York: IEEE, 2017, p. 356-359. ISBN 978-1-5386-1911-7. Available from: https://dx.doi.org/10.1109/ICECS.2017.8292071.
    82. HARAŠTA, Jakub, Jakub MÍŠEK, Monika HANYCH, Pavel LOUTOCKÝ, Michal MALANÍK, Jaromír ŠAVELKA, Markéta ŠTĚPÁNÍKOVÁ and Matěj MYŠKA. Rozměry citací v právu a anotační konvence (Citations in law and convention for annotations). Revue pro právo a technologie. Masarykova univerzita, 2017, vol. 8, No 15, p. 51-73. ISSN 1804-5383. Available from: https://dx.doi.org/10.5817/RPT2017-1-4.
    83. KUČERA, Adam and Tomáš PITNER. Semantic BMS: Ontology for Analysis of Building Operation Efficiency. In Hřebíček J., Denzer R., Schimak G., Pitner T. Environmental Software Systems. Computer Science for Environmental Protection. Cham: Springer, 2017, p. 349-359. ISBN 978-3-319-89934-3. Available from: https://dx.doi.org/10.1007/978-3-319-89935-0_29.
    84. RYGL, Jan, Jan POMIKÁLEK, Radim ŘEHŮŘEK, Michal RŮŽIČKA, Vít NOVOTNÝ and Petr SOJKA. Semantic Vector Encoding and Similarity Search Using Fulltext Search Engines. Online. In Proceedings of the 2nd Workshop on Representation Learning for NLP, RepL4NLP 2017 c/o ACL 2017. Vancouver, Canada: Association for Computational Linguistics, ACL, 2017, p. 81-90. ISBN 978-1-945626-62-3. Available from: https://dx.doi.org/10.18653/v1/W17-2611.
    85. KLUSÁČEK, Dalibor, Boris PARÁK and Lukáš HEJTMÁNEK. Scheduling Challenges in a Shared Private Cloud Infrastructure. CGW Workshop'17 Proceedings. 2017, vol. 2017, No 1, p. 23-24.
    86. LAŠTOVIČKA, Martin and Pavel ČELEDA. Situational Awareness: Detecting Critical Dependencies and Devices in a Network. In Daphne Tuncer, Robert Koch, Rémi Badonnel, Burkhard Stiller. AIMS 2017 - 11th IFIP WG 6.6 International Conference on Autonomous Infrastructure, Management, and Security. Zurich (Switzerland): Springer, 2017, p. 173-178. ISBN 978-3-319-60773-3. Available from: https://dx.doi.org/10.1007/978-3-319-60774-0_17.
    87. SCHVARCBACHER, Martin and Bruno ROSSI. Smart Grids Co-Simulations with Low-Cost Hardware. Online. In 43rd Euromicro Conference on Software Engineering and Advanced Applications (SEAA) 2017. Not specified: IEEE, 2017, p. 252-255. ISBN 978-1-5386-2140-0. Available from: https://dx.doi.org/10.1109/SEAA.2017.43.
    88. BANGUI, Hind, Barbora BÜHNOVÁ, Said RAKRAK and Said RAGHAY. Smart mobile technologies for the city of the future. Online. In Smart City Symposium Prague (SCSP), 2017. Neuveden: IEEE, 2017, p. 1-6. ISBN 978-1-5386-3825-5. Available from: https://dx.doi.org/10.1109/SCSP.2017.7973851.
    89. POLČÁK, Radim. Stock Exchange Interconnections and Legal Issues in Data Exchange. Masaryk University Journal of Law and Technology. 2017, vol. 7, No 1, p. 351-362. ISSN 1802-5943. Available from: https://dx.doi.org/10.5817/MUJLT2017-2-7.
    90. ŽÁDNÍK, Martin, Jan WRONA, Pavel KROBOT, Pavel MINAŘÍK, Jan BARIENČÍK, Tomáš JIRSÍK, Milan ČERMÁK and Daniel TOVARŇÁK. Systém pro sběr, uchování a analýzu síťových dat velkého rozsahu (System for collecting, storing and analysis of large IP flow data). 2017.
    91. IVANOVIČ, Mirjana, Stelios XINOGALOS, Tomáš PITNER and Miloš SAVIĆ. Technology enhanced learning in programming courses – international perspective. Education and Information Technologies. New York, NY, USA: Springer US, 2017, vol. 22, No 6, p. 2981-3003. ISSN 1360-2357. Available from: https://dx.doi.org/10.1007/s10639-016-9565-y.
    92. SOJKA, Petr and Vít NOVOTNÝ. TeX na školách? Samozřejmě ano! Příklad užití TeXu na Fakultě informatiky Masarykovy univerzity (TeX in Schools? Just Say Yes: the Use Case of TeX Usage at the Faculty of Informatics, Masaryk University). Zpravodaj CSTUG. Brno: CSTUG, 2017, vol. 27, 3-4, p. 118-137. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2017-3-4/118.
    93. VÝTVAROVÁ, Eva, Jan FOUSEK, Marek BARTOŇ, Radek MAREČEK, Martin GAJDOŠ, Martin LAMOŠ, Marie NOVÁKOVÁ, Tomáš SLAVÍČEK, Igor PETERLÍK and Michal MIKL. The Impact of Diverse Preprocessing Pipelines on Brain Functional Connectivity. Online. In 25th European Signal Processing Conference (EUSIPCO), Kos, Greece. Kos, Greece: IEEE, 2017, p. 2644-2648. ISBN 978-0-9928626-7-1. Available from: https://dx.doi.org/10.23919/EUSIPCO.2017.8081690.
    94. HENDRIKS, Luuk, Petr VELAN, Ricardo DE O SCHMIDT, Pieter-Tjerk DE BOER and Aiko PRAS. Threats and Surprises behind IPv6 Extension Headers. Online. In 2017 Network Traffic Measurement and Analysis Conference (TMA). Dublin, Ireland: IEEE Xplore Digital Library, 2017, p. 1-9. Available from: https://dx.doi.org/10.23919/TMA.2017.8002912.
    95. JIRSÍK, Tomáš, Milan ČERMÁK, Daniel TOVARŇÁK and Pavel ČELEDA. Toward Stream-Based IP Flow Analysis. IEEE Communications Magazine. IEEE, 2017, vol. 55, No 7, p. 70-76. ISSN 0163-6804. Available from: https://dx.doi.org/10.1109/MCOM.2017.1600972.
    96. PITNER, Tomáš, Jan MINISTR, Daniel TOVARŇÁK, Filip KŠENZULIAK and Adam KUČERA. Towards a Common Logging and Monitoring Framework for Critical Infrastructures. In Radek Němec, Lucie Chytilová. Strategic Management and its Support by Information Systems (SMSIS). Ostrava: VŠB - Technical University of Ostrava, 2017, p. 488-495. ISBN 978-80-248-4046-8.
    97. OŠLEJŠEK, Radek, Dalibor TOTH, Zdenek EICHLER and Karolína BURSKÁ. Towards a Unified Data Storage and Generic Visualizations in Cyber Ranges. In Mark Scanlon, Nhien-An Le-Khac. Proceedings of the 16th European Conference on Cyber Warfare and Security ECCWS 2017. UK: Academic Conferences and Publishing International Limited, 2017, p. 298-306. ISBN 978-1-911218-43-2.
    98. KASL, František. Towards identification of cybersecurity principles for smart city cyber-physical environment. In Cyberspace Conference 2017. 2017.
    99. NOVOTNÝ, Vít. Using Markdown Inside TeX Documents. TUGboat. Portland, OR 97208-2311, U.S.A: TUG, 2017, roč. 38, No 2, p. 214-217. ISSN 0896-3207.
    100. NOVOTNÝ, Vít. Vector Space Representations in Information Retrieval. Brno: Fakulta Informatiky Masarykovy Univerzity, 2017, 56 pp.
    101. BURSKÁ, Karolína and Radek OŠLEJŠEK. Visual Analytics for Network Security and Critical Infrastructures. In Daphne Tuncer, Robert Koch, Rémi Badonnel, Burkhard Stiller. AIMS 2017 - 11th IFIP WG 6.6 International Conference on Autonomous Infrastructure, Management, and Security. Zürich (Switzerland): Springer, 2017, p. 149-152. ISBN 978-3-319-60773-3. Available from: https://dx.doi.org/10.1007/978-3-319-60774-0_13.
    102. KOŠČÍK, Michal, Radim POLČÁK, Matěj MYŠKA and Jakub HARAŠTA. Výzkumná data a výzkumné databáze. Právní rámec zpracování a sdílení vědeckých poznatků (Research data and research databases. Legal framework for the processing and sharing of scientific findings). 1st ed. Praha: Wolters Kluwer, 2017, 164 pp. Právní monografie. ISBN 978-80-7552-952-7.
    103. KADLEC, Miroslav, Barbora BÜHNOVÁ, Jan TOMŠÍK, Jan HERMAN and Kateřina DRUŽBÍKOVÁ. Weather forecast based scheduling for demand response optimization in smart grids. Online. In Smart City Symposium Prague (SCSP), 2017. Prague: IEEE, 2017, p. 1-6. ISBN 978-1-5386-3825-5. Available from: https://dx.doi.org/10.1109/SCSP.2017.7973867.
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    105. PLESCH, Martin, Marcin PAWLOWSKI and Matej PIVOLUSKA. 1-out-of-2 oblivious transfer using a flawed bit-string quantum protocol. Physical Review A. 2017, vol. 95, No 4, p. "042324-1"-"042324-6", 6 pp. ISSN 2469-9926. Available from: https://dx.doi.org/10.1103/PhysRevA.95.042324.

    2016

    1. ROČEK, Aleš, Karel SLAVÍČEK, Otto DOSTÁL and Michal JAVORNÍK. A new approach to fully-reversible watermarking in medical imaging with breakthrough visibility parameters. Biomedical Signal Processing and Control. Elsevier, 2016, vol. 29, No 7, p. 44-52. ISSN 1746-8094. Available from: https://dx.doi.org/10.1016/j.bspc.2016.05.005.
    2. ČERMÁK, Milan, Daniel TOVARŇÁK, Martin LAŠTOVIČKA and Pavel ČELEDA. A Performance Benchmark of NetFlow Data Analysis on Distributed Stream Processing Systems. In Sema Oktug, Mehmet Ulema, Cicek Cavdar, Lisandro Zambenedetti Granville, Carlos Raniery P. dos Santos. NOMS 2016 - 2016 IEEE/IFIP Network Operations and Management Symposium. Istanbul, Turkey: IEEE Xplore Digital Library, 2016, p. 919-924. ISBN 978-1-5090-0223-8. Available from: https://dx.doi.org/10.1109/NOMS.2016.7502926.
    3. FILIPOVIČ, Jiří, Jana PAZÚRIKOVÁ, Aleš KŘENEK and Vojtěch SPIWOK. Accelerated RMSD Calculation for Molecular Metadynamics. In José Évora-Gómez and José Juan Hernandéz-Cabrera. Proceedings of the 2016 European Simulation and Modelling Conference. Ghent, Belgie: EUROSIS - ETI, 2016, p. 278-280. ISBN 978-90-77381-95-3.
    4. POLČÁK, Radim, Jakub MÍŠEK, Pavel LOUTOCKÝ, Jakub HARAŠTA, Václav STUPKA and Tomáš ABELOVSKÝ. Access to Telecommunication Data in Criminal Justice in Czech Republic and Slovakia. In Sieber, U., von zur Mühlen, N (eds.) Access to Telecommunication Data in Criminal Justice. 1st ed. Berlin: Duncker & Humblot, 2016, p. 247-435. Strafrechtliche Forschungsberichte. ISBN 978-3-428-15143-1.
    5. FOUSEK, Jan, Eva VÝTVAROVÁ, Adam MERTEL, Aleš CHALUPA and Eva HLADKÁ. Agent-Based Modelling And Simulation For The Geospatial Network Model Of The Roman World. Online. In International Symposium on Grids and Clouds (ISGC) 2016. Taipei, Taiwan: Proceedings of Science, 2016, p. 1-9. ISSN 1824-8039.
    6. STUPKA, Václav. AMM and Legal Implications for the Electricity Market. Online. In Björn Johansson, Filip Vencovský. BIR 2016 Workshops and Doctoral Consortium. 1684th ed. CEUR-WS.org, 2016. ISSN 1613-0073.
    7. PIVOLUSKA, Matej and Martin PLESCH. An explicit classical strategy for winning a CHSHq game. New Journal of Physics. IOP publishing, 2016, vol. 18, FEB 11 2016, p. nestránkováno, 10 pp. ISSN 1367-2630. Available from: https://dx.doi.org/10.1088/1367-2630/18/2/025013.
    8. DUDOVÁ, Zdenka, Jan ŠPAČEK, Luděk HAVRAN, Hana PIVOŇKOVÁ and Miroslav FOJTA. Analysis of Denatured PCR Products Modified with 7-deazapurine Bases at Hanging Mercury Drop Electrode. 2016. ISBN 978-80-905221-4-5.
    9. STUPKA, Václav. Analýza datového provozu jako prevence kybernetických bezpečnostních incidentů (Analysis of data traffic as a cyber security incidents prevention). Data Security Management. Praha: TATE International s.r.o., 2016, vol. 2016, No 3, p. 44-48. ISSN 1211-8737.
    10. ROSSI, Bruno, Stanislav CHREN, Barbora BÜHNOVÁ and Tomáš PITNER. Anomaly Detection in Smart Grid Data: An Experience Report. Online. In The 2016 IEEE International Conference on Systems, Man, and Cybernetics (SMC 2016). Budapest: IEEE, 2016, p. 2313-2318. ISBN 978-1-5090-1897-0. Available from: https://dx.doi.org/10.1109/SMC.2016.7844583.
    11. HOLUB, Petr, Morris A. SWERTZ, Robert REIHS, David VAN ENCKEVORT, Heimo MÜLLER and Jan-Eric LITTON. BBMRI-ERIC Directory: 515 Biobanks with Over 60 Million Biological Samples. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2016, vol. 14, No 6, p. 559-562. ISSN 1947-5535. Available from: https://dx.doi.org/10.1089/bio.2016.0088.
    12. MAYRHOFER, Michaela Th., Petr HOLUB, Andrea WUTTE and Jan-Eric LITTON. BBMRI-ERIC: the novel gateway to biobanks. Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz. 2016, vol. 2016, p. 1-6. ISSN 1437-1588. Available from: https://dx.doi.org/10.1007/s00103-015-2301-8.
    13. LOUTOCKÝ, Pavel and Kamil MALINKA. Bezpečnost ICT ve vnitřních předpisech a školení zaměstnanců (ICT Security in the Internal Regulations and Training of the Employees). Revue pro právo a technologie. Masarykova univerzita, 2016, vol. 7, No 14, p. 45-64. ISSN 1804-5383.
    14. VÝTVAROVÁ, Eva, Radek MAREČEK, Jan FOUSEK and Ivan REKTOR. Combining network and partial least square analyses: epilepsy case study. In 12. Mezinárodní workshop funkční magnetické rezonance, Olomouc. 2016.
    15. RUSŇÁK, Vít, Pavel TROUBIL, Eva HLADKÁ, Desana DAXNEROVÁ, Pavel KAJABA, Matej MINÁRIK, Svatoslav ONDRA and Tomáš SKLENÁK. CoUnSiL: A Videoconferencing Environment for Interpretation of Sign Language. Online. In Okyay Kaynak. 2016 15th International Conference on Information Technology Based Higher Education and Training (ITHET). Istanbul, Turkey: IEEE, 2016, p. 1-8. ISBN 978-1-5090-0778-3. Available from: https://dx.doi.org/10.1109/ITHET.2016.7760711.
    16. RUSŇÁK, Vít, Pavel TROUBIL, Svatoslav ONDRA, Tomáš SKLENÁK, Desana DAXNEROVÁ, Eva HLADKÁ, Pavel KAJABA, Matej MINÁRIK, Peter NOVÁK, Christoph DAMM and Jaromír KALA. CoUnSiL: Collaborative Universe for Remote Interpreting of Sign Language in Higher Education. Online. In Klaus Miesenberger. Computers Helping People with Special Needs: 15th International Conference, ICCHP 2016, Linz, Austria, July 13-15, 2016, Proceedings, Part II. ICCHP 2016. Neuveden: Springer International Publishing, 2016, p. 392-399. ISBN 978-3-319-41267-2. Available from: https://dx.doi.org/10.1007/978-3-319-41267-2_55.
    17. RUSŇÁK, Vít. CoUnSiL: Videoconferencing Environment for Remote Interpreting of Sign Language in Higher Education (Videoconferencing Environment for Remote Interpreting of Sign Language in Higher Education). In Sign Languages in Tertiary Education and Scholarly Publications in Sign Languages. 2016.
    18. KOUKAL, Pavel and Radim POLČÁK. Česko-slovenské symposium Ochranné známky a průmyslové vzory (Czech-Slowak Symposion on the Trademarks and Industrial Designs Protection). 2016.
    19. ČERMÁK, Milan and Pavel ČELEDA. Detecting Advanced Network Threats Using a Similarity Search. In Badonnel, Rémi and Koch, Robert and Pras, Aiko and Drašar, Martin and Stiller, Burkhard. Management and Security in the Age of Hyperconnectivity. 9701st ed. Munich, Germany: Springer International Publishing, 2016, p. 137-141. ISBN 978-3-319-39813-6. Available from: https://dx.doi.org/10.1007/978-3-319-39814-3_14.
    20. KŘENEK, Aleš, Tomáš RAČEK and Jana PAZÚRIKOVÁ. Direct SAXS Curve Fitting with an Ensable of Conformations. In Molecular Machines 2016. 2016.
    21. VÝTVAROVÁ, Eva, Jan FOUSEK and Michal MIKL. Dynamic connectivity. In Educational course NeuroImaging: Mapping the function and structure of brain, Brno. 2016.
    22. MIKL, Michal, Eva VÝTVAROVÁ, Jan FOUSEK, Marek BARTOŇ, Martin GAJDOŠ, Martin LAMOŠ, Tomáš SLAVÍČEK and Radek MAREČEK. Effect of Preprocessing Pipeline on Functional Connectivity Analysis. In 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM), Geneva, Switzerland. 2016.
    23. VELAN, Petr. EventFlow: Network Flow Aggregation Based on User Actions. In Sema Oktug, Mehmet Ulema, Cicek Cavdar, Lisandro Zambenedetti Granville, Carlos Raniery P. dos Santos. IEEE/IFIP Network Operations and Management Symposium 2016 (NOMS 2016). Istanbul, Turkey: IEEE Xplore Digital Library, 2016, p. 767-771. ISBN 978-1-5090-0222-1. Available from: https://dx.doi.org/10.1109/NOMS.2016.7502895.
    24. HOŠMAN, Mirek Tobiáš. Filosofická východiska antinatalismu aneb má lidstvo vymřít? In FILEX 2016. 2016.
    25. PAZÚRIKOVÁ, Jana, Aleš KŘENEK and Luděk MATYSKA. Guided Optimization Method for Fast and Accurate Atomic Charges Computation. In José Évora-Gómez and José Juan Hernandéz-Cabrera. Proceedings of the 2016 European Simulation and Modelling Conference. Ghent, Belgicko: EUROSIS - ETI, 2016, p. 267-274. ISBN 978-90-77381-95-3.
    26. KABÁT, Milan, Vojtěch DAVID, Petr HOLUB and Martin PULEC. High-performance forward error correction: Enabling multi-gigabit flows and beyond on commodity GPU and CPU hardware in presence of packet loss. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2016, vol. 54, No 1, p. 326 - 335. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2015.04.007.
    27. RAMBOUSEK, Adam and Zuzana NEVĚŘILOVÁ. How to Present NLP Topics to Children? In Aleš Horák, Pavel Rychlý, Adam Rambousek. RASLAN 2016 Recent Advances in Slavonic Natural Language Processing. Brno: Tribun EU, 2016, p. 153-159. ISBN 978-80-263-1095-2.
    28. HUSÁK, Martin, Milan ČERMÁK, Tomáš JIRSÍK and Pavel ČELEDA. HTTPS Traffic Analysis and Client Identification Using Passive SSL/TLS Fingerprinting. EURASIP Journal on Information Security. 2016, vol. 2016, No 1, p. 1-14. ISSN 2510-523X. Available from: https://dx.doi.org/10.1186/s13635-016-0030-7.
    29. GAJDOŠ, Martin, Michal MIKL, Eva VÝTVAROVÁ and Jan FOUSEK. Impact of ROI coverage on representative signals in atlas based parcellations. In 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM), Geneva, Switzerland. 2016.
    30. POLČÁK, Radim. Informace a data v právu (Information and Data in Law). Revue pro právo a technologie. Masarykova univerzita, 2016, vol. 7, No 13, p. 67-91. ISSN 1804-5383.
    31. POLČÁK, Radim, Jakub MÍŠEK, Václav STUPKA, Pavel LOUTOCKÝ and Tomáš ABELOVSKÝ. Interception of electronic communications in the Czech Republic and Slovakia. 1st ed. Brno: Masaryk University, Faculty of Law, 2016, 241 pp. Publications of the Masaryk University, theoretical series, edition Scientia, File No. 573. ISBN 978-80-210-8423-0.
    32. POLČÁK, Radim, Jakub MÍŠEK, Václav STUPKA, Pavel LOUTOCKÝ and Tomáš ABELOVSKÝ. Interception of electronic communications in the Czech Republic and Slovakia. 1st ed. Brno: Masarykova univerzita, 2016, 241 pp. Spisy Právnické fakulty MU (řada teoretická), č. 573. ISBN 978-80-210-8423-0.
    33. HELÁN, Radek, František URBAN and Karel SLAVÍČEK. Jednotka pro vyhodnocování optického inklinometru (Fiber optic inclinometer interrogation unit). 2016.
    34. VÝTVAROVÁ, Eva, Jan FOUSEK and Michal MIKL. Komunitní struktura a předzpracování v sítích funkční konektivity. In 63. Společný sjezd české a slovenské společnosti pro klinickou neurofyziologii, Praha. 2016.
    35. STUPKA, Václav. Kybernetická bezpečnost a ochrana kritických energetických infrastruktur. In 13. Letní škola aplikované informatiky Bedřichov. 2016.
    36. KOZEL, Jiří, Andrea KÝNOVÁ, Petr KOVÁCS, Pavel BOHUMEL and Jan SIKORA. Mapová knihovna munimap (Munimap mapping library). 2016.
    37. RŮŽIČKA, Michal, Petr SOJKA and Martin LÍŠKA. Math Indexer and Searcher under the Hood: Fine-Tuning Query Expansion and Unification Strategies. Online. In Noriko Kando and Kazuaki Kishida and Makoto P. Kato and Shuhei Yamamoto. Proceedings of the 12th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2016, p. 331-337. ISBN 978-4-86049-071-3.
    38. SOJKA, Petr and Michal RŮŽIČKA. Math-Aware Search Interfaces for Digital Mathematical Libraries (DML). 2016.
    39. KREJČÍŘ, Vlastimil. Memento – cestování časem na webu (Memento: Time Travel for the Web). Online. In INFORUM 2016: 22. ročník konference o profesionálních informačních zdrojích. Praha: Albertina icome Praha, 2016, p. nestránkováno, 11 pp. ISSN 1801-2213.
    40. BOUDA, Jan, Lukáš HOLÍK, Jan KOFROŇ, Jan STREJČEK and Adam RAMBOUSEK. MEMICS 2016. 11th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. 1., elektronické vyd. Brno: Masarykova univerzita, 2016. ISBN 978-80-210-8362-2.
    41. RAČEK, Tomáš, Radka SVOBODOVÁ VAŘEKOVÁ, Aleš KŘENEK, Jana PAZÚRIKOVÁ, Stanislav GEIDL and Jaroslav KOČA. NEEMP – nástroj pro parametrizaci EEM. In ENBIK2016. 2016. ISBN 978-80-7080-960-0.
    42. RAČEK, Tomáš, Jana PAZÚRIKOVÁ, Radka SVOBODOVÁ VAŘEKOVÁ, Stanislav GEIDL, Aleš KŘENEK, Francesco Luca FALGINELLA, Vladimír HORSKÝ, Václav HEJRET and Jaroslav KOČA. NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges. Journal of Cheminformatics. London: BIOMED CENTRAL LTD, 2016, vol. 8, October, p. nestránkováno, 14 pp. ISSN 1758-2946. Available from: https://dx.doi.org/10.1186/s13321-016-0171-1.
    43. POLČÁK, Radim. Nejdůležitější dopady všeobecného nařízení o ochraně osobních údajů (GDPR) (Most significant impact of the GDPR into the Czech law). Data Security Management. TATE International s.r.o., 2016, vol. 2016, No 4, p. 22-26. ISSN 1211-8737.
    44. MEDKOVÁ, Jana and Pavel ČELEDA. Network Defence Using Attacker-Defender Interaction Modelling. In Badonnel, R., Koch, R., Pras, A., Drašar, M., Stiller, B. IFIP International Conference on Autonomous Infrastructure, Management and Security. Munich, Germany: Springer International Publishing, 2016, p. 127-131. ISBN 978-3-319-39813-6. Available from: https://dx.doi.org/10.1007/978-3-319-39814-3_12.
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    46. SEDLÁŘ, Milan, Bin JI, Tomáš KRÁTKÝ, Tomáš REBOK and Rostislav HUZLÍK. Numerical and experimental investigation of three-dimensional cavitating flow around the straight NACA2412 hydrofoil. Ocean Engineering. Elsevier Ltd., 2016, vol. 123, No 123, p. 357-382. ISSN 0029-8018. Available from: https://dx.doi.org/10.1016/j.oceaneng.2016.07.030.
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