Publication Records

HOUSER, Josef and Kateřina HOŠKOVÁ. CEITEC: project-based financing of core facilities. In 2023 Core Technologies for Life Sciences. 2023.

EŠNER, Milan, Vladimír ULMAN, Nils NORLIN, Ivana SEKANINOVÁ and Eliška JANÍČKOVÁ. ImgLib2 and BigDataViewer Hackathon Brno. 2023.

O'CONNELL, Mary Anne, Michaela MUSILOVÁ and Barbora TRUKSOVÁ. RNA PhD Conference 2023. 2023.

LUKAVSKY, Peter, Dalibor BLAŽEK, Vojtěch BYSTRÝ, Anna HELÁNOVÁ and Barbora TRUKSOVÁ. RNA Summer School 2023. 2023.

POKORNÁ, Pavlína, Miroslav KREPL, Sébastien CAMPAGNE and Jiří ŠPONER. Conformational Heterogeneity of RNA Stem-Loop Hairpins Bound to FUS-RNA Recognition Motif with Disordered RGG Tail Revealed by Unbiased Molecular Dynamics Simulations. Journal of Physical Chemistry B. American Chemical Society, 2022, vol. 126, No 45, p. 9207-9221. ISSN 1520-6106. Available from: https://dx.doi.org/10.1021/acs.jpcb.2c06168.

MRÁZIKOVÁ, Klaudia, Pascal AUFFINGER, Holger KRUSE, Vojtěch MLÝNSKÝ and Jiří ŠPONER. Quantum chemistry reveals AMBER force field shortcomings for anion…π contacts in nucleic acids. In 2nd International Conference on Noncovalent Interactions. 2022.

MRÁZIKOVÁ, Klaudia, Pascal AUFFINGER, Holger KRUSE, Vojtěch MLÝNSKÝ and Jiří ŠPONER. Quantum chemistry reveals AMBER force field shortcomings for anion…π contacts in nucleic acids. In WATOC 2020: 12th Triennial Congress of the World Association of Theoretical and Computational Chemists. 2022.

KREPL, Miroslav, Pavlína POKORNÁ, Vojtěch MLÝNSKÝ, Petr STADLBAUER and Jiří ŠPONER. Spontaneous binding of single-stranded RNAs to RRM proteins visualized by unbiased atomistic simulations with a rescaled RNA force field. Nucleic Acids Research. Oxford University Press, 2022, vol. 50, No 21, p. 12480-12496. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkac1106.

DOSEDĚLOVÁ, Věra, Petra ITTERHEIMOVÁ and Petr KUBÁŇ. Analysis of bile acids in human biological samples by microcolumn separation techniques: A review. Electrophoresis. Hoboken: Wiley, 2021, vol. 42, 1-2, p. 68-85. ISSN 0173-0835. Available from: https://dx.doi.org/10.1002/elps.202000139.

ŠTEFÁNIKOVÁ, Marianna, Petr KUBÁŇ, Zita CHOVANCOVÁ, Jana SKŘIČKOVÁ and Martina DOUBKOVÁ. Cytokiny v kondenzátu vydechovaného vzduchu u asthma bronchiale a idopatické plicní fibrózy. Studia pneumologica et phthiseologica. Trios s.r.o., 2021, vol. 81, No 2, p. 78-87. ISSN 1213-810X.

ROY, Rajarshi, David NEČAS and Lenka ZAJÍČKOVÁ. Evidence of flexoelectricity in graphene nanobubbles created by tip induced electric field. Carbon. Elsevier, 2021, vol. 179, No 1, p. 677-682. ISSN 0008-6223. Available from: https://dx.doi.org/10.1016/j.carbon.2021.04.086.

ZHANG, Zhengyue, J. VOGELE, Klaudia MRÁZIKOVÁ, H. KRUSE, X.H. CANG, J. WOHNERT, M. KREPL and Jiří ŠPONER. Phosphorothioate Substitutions in RNA Structure Studied by Molecular Dynamics Simulations, QM/MM Calculations, and NMR Experiments. Journal of Physical Chemistry B. Washington, D.C.: American Chemical Society, 2021, vol. 125, No 3, p. 825-840. ISSN 1520-6106. Available from: https://dx.doi.org/10.1021/acs.jpcb.0c10192.

POKORNÁ, Pavlína, Miroslav KREPL and Jiří ŠPONER. Residues flanking the ARK^me3T/S motif allow binding of diverse targets to the HP1 chromodomain: Insights from molecular dynamics simulations. Biochimica et Biophysica Acta - General Subjects. Amsterdam: Elsevier B.V., 2021, vol. 1865, No 1, p. 1-12. ISSN 0304-4165. Available from: https://dx.doi.org/10.1016/j.bbagen.2020.129771.

MRÁZIKOVÁ, Klaudia, Pascal AUFFINGER, Jiří ŠPONER, Vojtěch MLÝNSKÝ and Holger KRUSE. Revealing Short-Range Imbalances in AMBER Force Field for Lone-pair…π Contacts. In RNA 2021. 2021.

MALÁ, Miriam, Petra ITTERHEIMOVÁ, Lukáš HOMOLA, Jana VINOHRADSKÁ and Petr KUBÁŇ. 3D Printed Skin-Wash Sampler for Sweat Sampling in Cystic Fibrosis Diagnosis Using Capillary Electrophoretic Ion Ratio Analysis. Separations. Basel: MDPI, 2021, vol. 8, No 12, p. 1-10. ISSN 2297-8739. Available from: https://dx.doi.org/10.3390/separations8120234.

BOUCHAL, Pavel, Olga T. SCHUBERT, Jakub FAKTOR, Lenka ČÁPKOVÁ, Hana IMRICHOVÁ, Karolína ZOUFALOVÁ, Vendula PÁRALOVÁ, Roman HRSTKA, Yansheng S. LIU, Holger A. EBHARDT, Eva BUDINSKÁ, Rudolf NENUTIL and Ruedi AEBERSOLD. Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry. Cell Reports. CAMBRIDGE: Cell Press, 2019, vol. 28, No 3, p. "832"-"843.e7", 20 pp. ISSN 2211-1247. Available from: https://dx.doi.org/10.1016/j.celrep.2019.06.046.

JANEČKOVÁ, Barbora. METAGENOMICS WORKSHOP. 2018.

DUDOVÁ, Zdenka, Hana PIVOŇKOVÁ and Miroslav FOJTA. Cis-Diamminedichloroplatinum(II) as a Chemical Probe for Study of Guanine Substitution by 7-Deazaguanine in PCR Amplicons. In 45th Heyrovsky Discussion - Electrochemistry of Biopolymers and Bioactive Compounds. 2012. ISBN 978-80-87541-03-6.

VYCHODILOVÁ, Zdenka, Hana PIVOŇKOVÁ and Miroslav FOJTA. Electrochemical analysis of PCR amplicons with incorporated 7-deazapurines. Brno: Mendelova univerzita v Brně, 2012, p. 34-36. ISBN 978-80-7375-618-5.

RIEDL, J, P MENOVA, R POHL, Petr ORSÁG, Miroslav FOJTA and Michal HOCEK. GFP-like Fluorophores as DNA Labels for Studying DNA-Protein Interactions. Journal of Organic Chemistry. WASHINGTON: AMER CHEMICAL SOC, 2012, vol. 77, No 18, p. 8287-8293. ISSN 0022-3263. Available from: https://dx.doi.org/10.1021/jo301684b.

RIEDL, J, R POHL, NP ERNSTING, Petr ORSÁG, Miroslav FOJTA and Michal HOCEK. Labelling of nucleosides and oligonucleotides by solvatochromic 4-aminophthalimide fluorophore for studying DNA-protein interactions. CHEMICAL SCIENCE. Cambridge: ROYAL SOC CHEMISTRY, 2012, vol. 3, No 9, p. 2797-2806. ISSN 2041-6520. Available from: https://dx.doi.org/10.1039/c2sc20404e.