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    2025

    1. Estimating resource budgets to ensure autotuning efficiency
      OĽHA, Jaroslav, Jana HOZZOVÁ, Matej ANTOL and Jiří FILIPOVIČ. Estimating resource budgets to ensure autotuning efficiency. PARALLEL COMPUTING. NETHERLANDS: ELSEVIER, 2025. ISSN 0167-8191. Available from: https://dx.doi.org/10.1016/j.parco.2025.103126.
      More: https://is.muni.cz/publication/2478850/en
    2. Tumor Suppressor miR-34a: Potential Biomarker of TACE Response in HCC
      ZAVADIL, Jan, Jaroslav JURÁČEK, Barbora ČECHOVÁ, Tomáš ROHAN, Jakub HUSTÝ, Ondřej SLABÝ, Martina LITSCHMANNOVÁ, Michal UHER, S. Nahum GOLDBERG and Tomáš ANDRAŠINA. Tumor Suppressor miR-34a: Potential Biomarker of TACE Response in HCC. CARDIOVASCULAR AND INTERVENTIONAL RADIOLOGY. NEW YORK: Springer Nature, 2025, vol. 48, No 1, p. 1-12. ISSN 0174-1551. Available from: https://dx.doi.org/10.1007/s00270-024-03908-5.
      More: https://is.muni.cz/publication/2458117/en
    3. Using Polycaprolactone Nanofibers for the Proof-of-Concept Construction of the Alveolar-Capillary Interface
      CAPANDOVÁ, Michaela, Veronika SEDLÁKOVÁ, Zbyněk VORÁČ, Hana KOTASOVÁ, Jana DUMKOVÁ, Lukáš MORÁŇ, Josef JAROŠ, Matej ANTOL, Dáša BOHAČIAKOVÁ and Aleš HAMPL. Using Polycaprolactone Nanofibers for the Proof-of-Concept Construction of the Alveolar-Capillary Interface. JOURNAL OF BIOMEDICAL MATERIALS RESEARCH PART A. Hoboken: WILEY, 2025, vol. 113, No 1, p. 1-16. ISSN 1549-3296. Available from: https://dx.doi.org/10.1002/jbm.a.37824.
      More: https://is.muni.cz/publication/2447527/en

    2024

    1. A dataset of hyperspectral Look-Up Tables for 3.5 million traits and structural combinations of Central European temperate broadleaf forests
      HANOUSEK, Tomáš, Terézia SLANINÁKOVÁ, Tomáš REBOK and Růžena JANOUTOVÁ. A dataset of hyperspectral Look-Up Tables for 3.5 million traits and structural combinations of Central European temperate broadleaf forests. 2024. Available from: https://dx.doi.org/10.48700/datst.bcnpf-47q73.
      More: https://is.muni.cz/publication/2452297/en
    2. A methodology for comparing optimization algorithms for auto-tuning
      FLORIS-JAN, Willemsen, Richard SCHOONHOVEN, Jiří FILIPOVIČ, Jacob O. TØRRING, Rob van NIEUWPOORT and Ben van WERKHOVEN. A methodology for comparing optimization algorithms for auto-tuning. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2024, vol. 109, October 2024, p. 489-504. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2024.05.021.
      More: https://is.muni.cz/publication/2442217/en
    3. AlphaFind (software)
      SLANINÁKOVÁ, Terézia, David PROCHÁZKA, Jakub ČILLÍK, Lucie NOVOTNÁ and Adrián ROŠINEC. AlphaFind. 2024. Available from: https://dx.doi.org/10.5281/zenodo.11085862.
      More: https://is.muni.cz/publication/2441942/en
    4. AlphaFind — discover structure similarity across the proteome in AlphaFold DB
      SLANINÁKOVÁ, Terézia, David PROCHÁZKA, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Jakub ČILLÍK, Miriama JÁNOŠOVÁ, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL and Matej ANTOL. AlphaFind — discover structure similarity across the proteome in AlphaFold DB. In Elixir All-Hands 2024. 2024. Available from: https://dx.doi.org/10.7490/f1000research.1119872.1.
      More: https://is.muni.cz/publication/2441940/en
    5. AlphaFind — discover structure similarity across the proteome in AlphaFold DB
      GREŠOVÁ, Katarína, Pavlína ŠPRINGEROVÁ, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Jaroslav OĽHA, Adrián ROŠINEC, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL and Matej ANTOL. AlphaFind — discover structure similarity across the proteome in AlphaFold DB. In ECCB2024. 2024.
      More: https://is.muni.cz/publication/2436357/en
    6. AlphaFind: Discover structure similarity across the entire known proteome
      PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL and Matej ANTOL. AlphaFind: Discover structure similarity across the entire known proteome. bioRxiv, 2024.
      More: https://is.muni.cz/publication/2375820/en
    7. AlphaFind: Discover structure similarity across the entire known proteome – data and model
      NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Katarína GREŠOVÁ, Jaroslav OĽHA, Vlastislav DOHNAL, Adrián ROŠINEC and Matej ANTOL. AlphaFind: Discover structure similarity across the entire known proteome – data and model. 2024. Available from: https://dx.doi.org/10.48700/datst.d35zf-1ja47.
      More: https://is.muni.cz/publication/2441963/en
    8. AlphaFind: discover structure similarity across the proteome in AlphaFold DB
      PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jaroslav OĽHA, Adrián ROŠINEC, Katarína GREŠOVÁ, Miriama JÁNOŠOVÁ, Jakub ČILLÍK, Jana PORUBSKÁ, Radka SVOBODOVÁ, Vlastislav DOHNAL and Matej ANTOL. AlphaFind: discover structure similarity across the proteome in AlphaFold DB. Nucleic acids research. Oxford: Oxford University Press, 2024, vol. 52, July 5, p. "W182"-"W186", 5 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkae397.
      More: https://is.muni.cz/publication/2402219/en
    9. Beyond Metadata: Leveraging Similarity Search in Molecular Dynamics Data
      ROŠINEC, Adrián, Tomáš PAVLÍK, Terézia SLANINÁKOVÁ, Aleš KŘENEK, Pavlína ŠPRINGEROVÁ, Matej ANTOL and Radka SVOBODOVÁ. Beyond Metadata: Leveraging Similarity Search in Molecular Dynamics Data. In 2nd BioExcel Conference on Advances in Biomolecular Simulations. 2024. Available from: https://dx.doi.org/10.5281/zenodo.14500696.
      More: https://is.muni.cz/publication/2460781/en
    10. Cells, biomaterials, infrastructure; and the value of the data
      CAPANDOVÁ, Michaela, Veronika SEDLÁKOVÁ, Zbyněk VORÁČ, Hana KOTASOVÁ, Jana DUMKOVÁ, Lukáš MORÁŇ, Josef JAROŠ, Matej ANTOL, Dáša BOHAČIAKOVÁ and Aleš HAMPL. Cells, biomaterials, infrastructure; and the value of the data. In 2. Offsite Meeting of the Department of Histology and Embryology (ÚHE): Advancing Science and Collaboration. 2024. ISBN 978-80-280-0587-0.
      More: https://is.muni.cz/publication/2430579/en
    11. Data Management and FAIRification in MAFIL
      SVOBODA, Tomáš, Jakub ČILLÍK, Michal MIKL, Tomáš SLAVÍČEK and Radka SVOBODOVÁ. Data Management and FAIRification in MAFIL. In Czech‐BioImaging Annual Scientific Conference 2024: Imaging Principles of Life. 2024.
      More: https://is.muni.cz/publication/2439562/en
    12. Data Management of Biological Imaging Data
      SVOBODA, Tomáš, Adrián ROŠINEC, Tomáš RAČEK and Radka SVOBODOVÁ. Data Management of Biological Imaging Data. In ELIXIR CZ Annual Conference 2024: Data management. 2024.
      More: https://is.muni.cz/publication/2453921/en
    13. Data workflows at CEITEC MU
      SVOBODA, Tomáš and Adrián ROŠINEC. Data workflows at CEITEC MU. In Setkání OS metodiků MU. 2024.
      More: https://is.muni.cz/publication/2386819/en
    14. Efficient Code Region Characterization Through Automatic Performance Counters Reduction Using Machine Learning Techniques
      HARUTYUNYAN, Suren, Eduardo CÉSAR, Anna SIKORA, Jiří FILIPOVIČ, Akash DUTTA, Ali JANNESARI and Jordi ALCARAZ. Efficient Code Region Characterization Through Automatic Performance Counters Reduction Using Machine Learning Techniques. Online. In European Conference on Parallel Processing. Madrid, Spain: Springer Nature Switzerland, 2024, p. 18-32. ISBN 978-3-031-69576-6. Available from: https://dx.doi.org/10.1007/978-3-031-69577-3_2.
      More: https://is.muni.cz/publication/2442223/en
    15. EOSC CZ: Towards the development of Czech national ecosystem for FAIR research data
      ANTOL, Matej, Jiří MAREK, Michaela CAPANDOVÁ, Jaroslav JURÁČEK and Luděk MATYSKA. EOSC CZ: Towards the development of Czech national ecosystem for FAIR research data. arXiv, 2024, 2 pp.
      More: https://is.muni.cz/publication/2377657/en
    16. Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment
      VÍTEČEK, Jan, Andrea VÍTEČKOVÁ WÜNSCHOVÁ, Sandra THALEROVÁ, Sumeet GULATI, Lukáš KUBALA, Michaela CAPANDOVÁ, Aleš HAMPL and Robert MIKULÍK. Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment. PLOS ONE. SAN FRANCISCO: PUBLIC LIBRARY SCIENCE, 2024, vol. 6, No 19, p. 1-13. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0302269.
      More: https://is.muni.cz/publication/2409857/en
    17. Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment
      VÍTEČEK, Jan, Andrea VÍTEČKOVÁ WÜNSCHOVÁ, Sandra THALEROVÁ, Sumeet GULATI, Lukáš KUBALA, Michaela CAPANDOVÁ, Aleš HAMPL and Robert MIKULÍK. Factors influencing the efficacy of recombinant tissue plasminogen activator: Implications for ischemic stroke treatment. Plos one. San Francisco: Public Library of Science, 2024, vol. 19, No 6, p. 1-13. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0302269.
      More: https://is.muni.cz/publication/2441398/en
    18. Fast, structure-based searching in a large-scale protein data repository
      SLANINÁKOVÁ, Terézia, Katarína GREŠOVÁ, David PROCHÁZKA, Viktória SPIŠAKOVÁ, Adrián ROŠINEC, Jakub ČILLÍK, Pavlína ŠPRINGEROVÁ, Aleš KŘENEK, Vlastislav DOHNAL, Radka SVOBODOVÁ and Matej ANTOL. Fast, structure-based searching in a large-scale protein data repository. In ELIXIR CZ Annual Conference. 2024. Available from: https://dx.doi.org/10.13140/RG.2.2.31355.53281.
      More: https://is.muni.cz/publication/2441958/en
    19. Getting your DUCs in a row - standardising the representation of Digital Use Conditions
      JEANSON, Francis, Spencer J GIBSON, Pinar ALPER, Alexander BERNIER, J Patrick WOOLLEY, Daniel MIETCHEN, Andrzej STRUG, Regina BECKER, Pim KAMERLING, Maria del Carmen Sanchez GONZALEZ, Nancy MAH, Ann NOVAKOWSKI, Mark D WILKINSON, Oussama Mohammed BENHAMED, Annalisa LANDI, Georg Philip KROG, Heimo MÜLLER, Umar RIAZ, Colin VEAL, Petr HOLUB, Esther VAN ENCKEVORT and Anthony J BROOKES. Getting your DUCs in a row - standardising the representation of Digital Use Conditions. SCIENTIFIC DATA. London: NATURE PORTFOLIO, 2024, vol. 11, No 1, p. 1-10. ISSN 2052-4463. Available from: https://dx.doi.org/10.1038/s41597-024-03280-6.
      More: https://is.muni.cz/publication/2401179/en
    20. GraSR: Protein structural embeddings of AlphaFold DB
      NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. GraSR: Protein structural embeddings of AlphaFold DB. 2024. Available from: https://dx.doi.org/10.48700/datst.br8aq-db495.
      More: https://is.muni.cz/publication/2439240/en
    21. Hands-on experience with big data transfer via iRODS and Onedata
      SVOBODA, Tomáš, Adrián ROŠINEC and Ondřej FILIP. Hands-on experience with big data transfer via iRODS and Onedata. In e-INFRA CZ CONFERENCE 2024. 2024.
      More: https://is.muni.cz/publication/2416357/en
    22. High spatial and spectral resolution dataset of hyperspectral look-up tables for 3.5 million traits and structural combinations of Central European temperate broadleaf forests
      HANOUSEK, Tomáš, Terézia SLANINÁKOVÁ, Tomáš REBOK and Růžena JANOUTOVÁ. High spatial and spectral resolution dataset of hyperspectral look-up tables for 3.5 million traits and structural combinations of Central European temperate broadleaf forests. DATA IN BRIEF. NETHERLANDS: ELSEVIER, 2024, vol. 57, December 2024, p. 1-13. ISSN 2352-3409. Available from: https://dx.doi.org/10.1016/j.dib.2024.111105.
      More: https://is.muni.cz/publication/2452300/en
    23. Interpreting convolutional neural network classifiers applied to laser-induced breakdown optical emission spectra
      KÉPEŠ, Erik, Jakub VRÁBEL, Tomáš BRÁZDIL, Petr HOLUB, Pavel POŘÍZKA and Jozef KAISER. Interpreting convolutional neural network classifiers applied to laser-induced breakdown optical emission spectra. Talanta. AMSTERDAM: Elsevier, 2024, vol. 266, No 124946, p. 1-11. ISSN 0039-9140. Available from: https://dx.doi.org/10.1016/j.talanta.2023.124946.
      More: https://is.muni.cz/publication/2447199/en
    24. Introduction to the new generation EGI container execution platform
      ROŠINEC, Adrián. Introduction to the new generation EGI container execution platform. In EGI Webinar programme 2024. 2024. Available from: https://dx.doi.org/10.5281/zenodo.10566759.
      More: https://is.muni.cz/publication/2365613/en
    25. Learned Metric Index (software)
      SLANINÁKOVÁ, Terézia and David PROCHÁZKA. Learned Metric Index. 2024. Available from: https://dx.doi.org/10.5281/zenodo.13860051.
      More: https://is.muni.cz/publication/2438599/en
    26. Leveraging BBMRI-ERIC for XAI Research in Digital Pathology
      HOLUB, Petr. Leveraging BBMRI-ERIC for XAI Research in Digital Pathology. In 20th European Congress on Digital Pathology 2024 (ECDP2024). 2024.
      More: https://is.muni.cz/publication/2412198/en
    27. LMI-10: Protein structural embeddings of AlphaFold DB
      NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. LMI-10: Protein structural embeddings of AlphaFold DB. 2024. Available from: https://dx.doi.org/10.48700/datst.t45hr-bcw17.
      More: https://is.muni.cz/publication/2439238/en
    28. LMI-30: Protein structural embeddings of AlphaFold DB
      NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. LMI-30: Protein structural embeddings of AlphaFold DB. 2024. Available from: https://dx.doi.org/10.48700/datst.kgb8j-r5f84.
      More: https://is.muni.cz/publication/2439241/en
    29. MAFILDB - technická realizace (MAFILDB - technical implementation)
      SVOBODA, Tomáš. MAFILDB - technická realizace (MAFILDB - technical implementation). In FAIR data pro uživatele CF MAFIL. 2024.
      More: https://is.muni.cz/publication/2387957/en
    30. Pluripotent stem cell-derived expandable lung epithelial progenitors as a tool for investigation of ER- associated lung stress and regeneration
      HERŮDKOVÁ, Jarmila, Türkan PORTAKAL, Vítězslav HAVLÍČEK, Vendula PELKOVÁ, Katarína ČIMBOROVÁ, Lukáš PEČINKA, Lukáš MORÁŇ, Volodymyr POROKH, Michaela CAPANDOVÁ, Hana KOTASOVÁ, Aleš HAMPL and Petr VAŇHARA. Pluripotent stem cell-derived expandable lung epithelial progenitors as a tool for investigation of ER- associated lung stress and regeneration. In International Society for Stem Cell Research Annual Meeting. 10-13.7.2024. Hamburg, Německo. 2024.
      More: https://is.muni.cz/publication/2468921/en
    31. Proposal for a framework of contextual metadata in selected research infrastructures of the life sciences and the social sciences & humanities
      OHMANN, Christian, Maria PANAGIOTOPOULOU, Steve CANHAM, Petr HOLUB, Kurt MAJCEN, Gary SAUNDERS, Maddalena FRATELLI, Jing TANG, Philip GRIBBON, Reagon KARKI, Mari KLEEMOLA, Katja MOILANEN, Daan BROEDER, Walter DAELEMANS and Pieter FIVEZ. Proposal for a framework of contextual metadata in selected research infrastructures of the life sciences and the social sciences & humanities. International Journal of Metadata, Semantics and Ontologies. Inderscience Publishers, 2024, vol. 16, No 4, p. 261-277. ISSN 1744-2621.
      More: https://is.muni.cz/publication/2419937/en
    32. Rare ring conformations in PDB: Facts or wishful thinking?
      BUČEKOVÁ, Gabriela, Viktoriia DOSHCHENKO, Aliaksei CHARESHNEU, Jana PORUBSKÁ, Michal PAJTINKA, Michal OLEKSIK, Tomáš SVOBODA, Vladimír HORSKÝ and Radka SVOBODOVÁ. Rare ring conformations in PDB: Facts or wishful thinking? bioRxiv. 2024. Available from: https://dx.doi.org/10.1101/2024.06.20.598822.
      More: https://is.muni.cz/publication/2421800/en
    33. Research Data Management at CEITEC MU
      ROŠINEC, Adrián and Tomáš SVOBODA. Research Data Management at CEITEC MU. In Open Science Workshop 2024. 2024.
      More: https://is.muni.cz/publication/2416720/en
    34. Scaling Learned Metric Index to 100M Datasets
      PROCHÁZKA, David, Terézia SLANINÁKOVÁ, Jozef ČERŇANSKÝ, Jaroslav OĽHA, Matej ANTOL and Vlastislav DOHNAL. Scaling Learned Metric Index to 100M Datasets. In Edgar Chávez, Benjamin Kimia, Jakub Lokoč, Marco Patella, Jan Sedmidubsky. 17th International Conference on Similarity Search and Applications (SISAP 2024). Cham: Springer, 2024, p. 266-273. ISBN 978-3-031-75822-5. Available from: https://dx.doi.org/10.1007/978-3-031-75823-2_22.
      More: https://is.muni.cz/publication/2428378/en
    35. Scientific Dataset Management System for the Research Institute Based on Onedata
      SVOBODA, Tomáš, Adrián ROŠINEC, Tomáš RAČEK, Josef HANDL, Aleš KŘENEK and Radka SVOBODOVÁ. Scientific Dataset Management System for the Research Institute Based on Onedata. In EGI Conference 2024. 2024.
      More: https://is.muni.cz/publication/2453923/en
    36. Simulated trait and spectroscopy data to support retrieval of forest biophysical parameters from spaceborne imaging spectroscopy
      HANOUSEK, Tomáš, Terézia SLANINÁKOVÁ, Růžena JANOUTOVÁ, Marian ŠVIK and Tomáš REBOK. Simulated trait and spectroscopy data to support retrieval of forest biophysical parameters from spaceborne imaging spectroscopy. In 3rd WORKSHOP ON INTERNATIONAL COOPERATION IN SPACEBORNE IMAGING SPECTROSCOPY. 2024.
      More: https://is.muni.cz/publication/2452298/en
    37. Test Anxiety Among Czech Pupils in Lower-Secondary Education
      ŠEJNA, Erik. Test Anxiety Among Czech Pupils in Lower-Secondary Education. Studia paedagogica. Brno, 2024, vol. 29, No 2, p. 108-127. ISSN 1803-7437. Available from: https://dx.doi.org/10.5817/SP2024-2-5.
      More: https://is.muni.cz/publication/2448882/en
    38. Testová úzkost a sociálně-afektivní indikátory well-beingu v nižším sekundárním vzdělávání (Test Anxiety and Social-Affective Indicators of Well-being in Lower-Secondary Education)
      ŠEJNA, Erik. Testová úzkost a sociálně-afektivní indikátory well-beingu v nižším sekundárním vzdělávání (Test Anxiety and Social-Affective Indicators of Well-being in Lower-Secondary Education). Online. In Andrea Rozkovcová, Jakub Pivarč. Sborník příspěvků z XXXII. výroční konference České asociace pedagogického výzkumu: SPOLUPRÁCE OBORŮ PRO PODPORU KVALITY VZDĚLÁVÁNÍ. Česká asociace pedagogického výzkumu, 2024, p. 43-89. ISBN 978-80-7392-421-8.
      More: https://is.muni.cz/publication/2448917/en
    39. Toward a common standard for data and specimen provenance in life sciences
      WITTNER, Rudolf, Petr HOLUB, Cecilia MASCIA, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Clare ALLOCCA, Fay BETSOU, Tony BURDETT, Ibon CANCIO, Adriane CHAPMAN, Martin CHAPMAN, Mélanie COURTOT, Vasa CURCIN, Johann EDER, Mark ELLIOT, Katrina EXTER, Carole GOBLE, Martin GOLEBIEWSKI, Bron KISLER, Andreas KREMER, Simone LEO, Sheng LIN-GIBSON, Anna MARSANO, Marco MATTAVELLI, Josh MOORE, Hiroki NAKAE, Isabelle PERSEIL, Ayat SALMAN, James SLUKA, Stian SOILAND-REYES, Caterina STRAMBIO-DE-CASTILLIA, Michael SUSSMAN, Jason R SWEDLOW, Kurt ZATLOUKAL and Jörg GEIGER. Toward a common standard for data and specimen provenance in life sciences. LEARNING HEALTH SYSTEMS. UNITED STATES: WILEY, 2024, vol. 8, No 1, p. 1-9. ISSN 2379-6146. Available from: https://dx.doi.org/10.1002/lrh2.10365.
      More: https://is.muni.cz/publication/2276198/en
    40. Towards Dynamic Autotuning of SpMV in CUSP Library
      DEMEK, Miroslav and Jiří FILIPOVIČ. Towards Dynamic Autotuning of SpMV in CUSP Library. Online. In IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW). San Francisco, USA: IEEE, 2024, p. 14-22. ISBN 979-8-3503-6461-3. Available from: https://dx.doi.org/10.1109/IPDPSW63119.2024.00012.
      More: https://is.muni.cz/publication/2442222/en
    41. 2. Offsite Meeting of the Department of Histology and Embryology (ÚHE): Advancing Science and Collaboration
      HUTEČKOVÁ, Barbora, Jan KŘIVÁNEK, Zuzana SUMBALOVÁ KOLEDOVÁ, Zuzana HOLUBCOVÁ, Matea BREZAK, Ivana AĆIMOVIĆ, Türkan PORTAKAL, Jana DUMKOVÁ, Lukáš MORÁŇ, Aleš HAMPL, Yelyzaveta MAKIEIEVA, Tereza VÁŇOVÁ, Dáša BOHAČIAKOVÁ, Václav CHOCHOLA, Josef JAROŠ, Katarína ČIMBOROVÁ, Irena KOUTNÁ, Michaela BOSÁKOVÁ, Tomáš BÁRTA, Vítězslav HAVLÍČEK, Soňa KLOUDOVÁ, Vincent Alexander JONGEN, Jarmila HERŮDKOVÁ, Marcos GONZÁLEZ LÓPEZ, Leoš BENÁK, Maryam AZAM, Haneen Riadh Ali TUAIMA, Margarita GORBULINA, Josef LAVICKÝ, Marina ŠTRUNCOVÁ, Erika MIKULENKOVÁ, Riza Can CAKMAKCI, Petr VAŇHARA, Vendula PELKOVÁ, Victorio Martin POZO DEVOTO, Hana KOTASOVÁ, Michaela KAVKOVÁ, Petr TAUŠ, David VYSLOUŽIL, Canan ÇELIKER, Kateřina AMRUZ ČERNÁ, Naděžda VAŠKOVICOVÁ, Tereza SOURALOVÁ, Volodymyr POROKH, Drahomíra KYJOVSKÁ, Daniela KROČIANOVÁ, Michaela CAPANDOVÁ, Veronika SEDLÁKOVÁ, Veronika FEDOROVÁ, Jan RAŠKA, Miriam SATKOVÁ, Petr FOJTÍK, Klára PLEŠINGROVÁ, Soňa CESNÁRIKOVÁ, Jiří SEDMÍK, Hana HŘÍBKOVÁ, Marko MEĆAVA, Adam HARMANEC, Veronika POSPÍŠILOVÁ, Tami BOČKOVÁ, Veronika BOSÁKOVÁ, Adam BOGDANOVIČ, Zbyněk ZDRÁHAL, Vladislav RAKULTSEV, Marcela BUCHTOVÁ, Simona BÁRTOVÁ and Petr GINTAR. 2. Offsite Meeting of the Department of Histology and Embryology (ÚHE): Advancing Science and Collaboration. Edition: 1., electronic. Brno: Masarykova Univerzita, 2024, 18 pp. ISBN 978-80-280-0587-0.
      More: https://is.muni.cz/publication/2431280/en
    42. 3D-af-Surfer: Protein structural embeddings of AlphaFold DB
      NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. 3D-af-Surfer: Protein structural embeddings of AlphaFold DB. 2024. Available from: https://dx.doi.org/10.48700/datst.tbws0-hj147.
      More: https://is.muni.cz/publication/2441960/en
    43. 3DZD: Protein structural embeddings of AlphaFold DB v4
      NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. 3DZD: Protein structural embeddings of AlphaFold DB v4. 2024. Available from: https://dx.doi.org/10.48700/datst.t45hr-bcw17.
      More: https://is.muni.cz/publication/2441959/en
    44. 3DZD: Protein structural embeddings of ESM Atlas
      NOVOTNÁ, Lucie, Terézia SLANINÁKOVÁ, David PROCHÁZKA, Lukáš HEJTMÁNEK, Adrián ROŠINEC, Jaroslav OĽHA, Katarína GREŠOVÁ, Vlastislav DOHNAL and Matej ANTOL. 3DZD: Protein structural embeddings of ESM Atlas. 2024. Available from: https://dx.doi.org/10.48700/datst.cd6zk-k0v44.
      More: https://is.muni.cz/publication/2436500/en

    2023

    1. A Case Study on the Impact of Forensic-Ready Information Systems on the Security Posture
      DAUBNER, Lukáš, Raimundas MATULEVICIUS, Barbora BÜHNOVÁ, Matej ANTOL, Michal RŮŽIČKA and Tomáš PITNER. A Case Study on the Impact of Forensic-Ready Information Systems on the Security Posture. Online. In Advanced Information Systems Engineering. Cham: Springer Nature Switzerland, 2023, p. 522-538. ISBN 978-3-031-34559-3. Available from: https://dx.doi.org/10.1007/978-3-031-34560-9_31.
      More: https://is.muni.cz/publication/2293301/en
    2. A tissue miRNA expression pattern is associated with disease aggressiveness of localized prostate cancer
      JURÁČEK, Jaroslav, Marie BOUDNÁ, Michal STANÍK, Michaela RUČKOVÁ, Karolína TRACHTOVÁ, Hana MALČÍKOVÁ, Eva LŽIČAŘOVÁ, Dominik A BARTH, Martin PICHLER and Ondřej SLABÝ. A tissue miRNA expression pattern is associated with disease aggressiveness of localized prostate cancer. Prostate. HOBOKEN: WILEY, 2023, vol. 83, No 4, p. 340-351. ISSN 0270-4137. Available from: https://dx.doi.org/10.1002/pros.24466.
      More: https://is.muni.cz/publication/2388197/en
    3. AI for Life: Trends in Artificial Intelligence for Biotechnology
      HOLZINGER, Andreas, Katharina KEIBLINGER, Petr HOLUB, Kurt ZATLOUKAL and Heimo MÜLLER. AI for Life: Trends in Artificial Intelligence for Biotechnology. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, vol. 74, No 1, p. 16-24. ISSN 1871-6784. Available from: https://dx.doi.org/10.1016/j.nbt.2023.02.001.
      More: https://is.muni.cz/publication/2253679/en
    4. An Evaluation of EDAM Coverage in the Tools Ecosystem and Prototype Integration of Galaxy and Workflowhub Systems.
      LAMOTHE, Lucie, Jennifer R B JENSEN, Hans IENASESCU, Ove J R GUSTAFSSON, Alban GAIGNARD, Dmitry REPCHEVSKY, Radka SVOBODOVÁ, Tomáš RAČEK, Adrián ROŠINEC, Matej ANTOL and Hervé MÉNAGER. An Evaluation of EDAM Coverage in the Tools Ecosystem and Prototype Integration of Galaxy and Workflowhub Systems. BioHackrXiv. 2023, p. 1-10. Available from: https://dx.doi.org/10.37044/osf.io/79kje.
      More: https://is.muni.cz/publication/2293251/en
    5. "Be Sustainable Recommendations" for FAIR Resources in Life Sciences research: EOSC-Life's Lessons
      DAVID, Romain, Arina RYBINA, Jean-Marie BUREL, Jean-Karim HERICHE, Pauline AUDERGON, Jan-Willem BOITEN, Frederik COPPENS, Sara CROCKETT, Exter KATRINA, Sven FAHRENER, Maddalena FRATELLI, Carole GOBLE, Philipp GORMANNS, Tobias GRANTNER, Bjorn GRUNING, Kim Tamara GURWITZ, John HANCOCK, Henriette HARMSE, Petr HOLUB, Nick JUTY, Geoffrey KARNBACH, Emma KAROUNE, Antje KEPPLER, Jessica KLEMEIER, Carla LANCELOTTI, Jean-Luc LEGRAS, L Allyson LISTER, Livio Longo DARIO, Rebecca LUDWIG, Benedicte MADON, Marzia MASSIMI, Vera MATSER, Rafaele MATTEONI, Michaela Th MAYRHOFER, Ohmann CHRISTIAN, Maria PANAGIOTOPOULOU, Helen PARKINSON, Isabelle PERSEIL, Claudia PFANDER, Roland PIERUSCHKA, Michael RAESS, Andreas RAUBER, Audrey S RICHARD, Paolo ROMANO, Antonio ROSATO, Alex SANCHEZ-PLA, Susanna-Assunta SANSONE, Ugis SARKANS, Beatriz SERRANO-SOLANO, Jing TANG, Ziaurrehman TANOLI, Jonathan TEDDS, Harald WAGENER, Martin WEISE, Hans V WESTERHOFF, Rudolf WITTNER, Jonathan EWBANK, Niklas BLOMBERG and Philip GRIBBON. "Be Sustainable Recommendations" for FAIR Resources in Life Sciences research: EOSC-Life's Lessons. EMBO Journal. 2023. ISSN 1460-2075.
      More: https://is.muni.cz/publication/2307517/en
    6. Beskar Cloud: OpenStack Deployment on Top of Kubernetes
      ROŠINEC, Adrián and Klára MORAVCOVÁ. Beskar Cloud: OpenStack Deployment on Top of Kubernetes. In 12th Iberian Grid Conference. 2023.
      More: https://is.muni.cz/publication/2330642/en
    7. BIBBOX, a FAIR toolbox and App Store for Life Science Research
      MÜLLER, Heimo, Catarina LOPES-DIAS, Petr HOLUB, Markus PLASS, Emilian JUNGWIRTH, Robert REIHS, Paul R TORKE, Apostolos MALATRAS, Anouk BERGER, Heather COOMBS, Joakim DILLNER and Roxana MERINO-MARTINEZ. BIBBOX, a FAIR toolbox and App Store for Life Science Research. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, vol. 77, p. 12-19. ISSN 1871-6784. Available from: https://dx.doi.org/10.1016/j.nbt.2023.06.001.
      More: https://is.muni.cz/publication/2317098/en
    8. Biomarkery jako prognostické a prediktivní faktory u pacientů s hepatocelulárním karcinomem podstupujících radiologické onkologické intervence (Biomarkers as prognostic and predictive factors in patient with hepatocellular carcinoma undergoing radiological oncological interventions)
      ZAVADIL, Jan, Tomáš ROHAN, Jaroslav JURÁČEK, Igor KISS, Lenka OSTŘÍŽKOVÁ, Vlastimil VÁLEK, Ondřej SLABÝ and Tomáš ANDRAŠINA. Biomarkery jako prognostické a prediktivní faktory u pacientů s hepatocelulárním karcinomem podstupujících radiologické onkologické intervence (Biomarkers as prognostic and predictive factors in patient with hepatocellular carcinoma undergoing radiological oncological interventions). Klinická onkologie. Praha: Česká lékařská společnost J. E. Purkyně, 2023, vol. 36, No 2, p. 104-111. ISSN 0862-495X. Available from: https://dx.doi.org/10.48095/ccko2023104.
      More: https://is.muni.cz/publication/2275797/en
    9. Building OpenStack Cloud with Kubernetes as Undercloud
      ROŠINEC, Adrián and Klára MORAVCOVÁ. Building OpenStack Cloud with Kubernetes as Undercloud. In EGI Conference 2023. 2023.
      More: https://is.muni.cz/publication/2293254/en
    10. By leaps and bounds: From in vitro lung tissue models to fostering collaboration in science
      CAPANDOVÁ, Michaela. By leaps and bounds: From in vitro lung tissue models to fostering collaboration in science. In Annual Meeting, Pavlov, 24.5.-26.5.2023. 2023.
      More: https://is.muni.cz/publication/2354884/en
    11. By leaps and bounds: From in vitro lung tissue models to fostering collaboration in science
      CAPANDOVÁ, Michaela, Veronika SEDLÁKOVÁ, Dáša BOHAČIAKOVÁ, Hana KOTASOVÁ, Vendula PELKOVÁ, Zbyněk VORÁČ, Matej ANTOL and Aleš HAMPL. By leaps and bounds: From in vitro lung tissue models to fostering collaboration in science. In The Annual PhD Conference in Biomedical Sciences. 2023.
      More: https://is.muni.cz/publication/2354818/en
    12. Cerebral organoids derived from patients with Alzheimer´s disease with PSEN1/2 mutations have defective tissue patterning and altered development
      VÁŇOVÁ, Tereza, Jiří SEDMÍK, Jan RAŠKA, Kateřina AMRUZ ČERNÁ, Petr TAUŠ, Veronika POSPÍŠILOVÁ, Markéta NEZVEDOVÁ, Veronika FEDOROVÁ, Soňa KADÁKOVÁ, Hana KLÍMOVÁ, Michaela CAPANDOVÁ, Petra ORVISKÁ, Petr FOJTÍK, Simona BÁRTOVÁ, Karla PLEVOVÁ, Zdeněk SPÁČIL, Hana HŘÍBKOVÁ and Dáša BOHAČIAKOVÁ. Cerebral organoids derived from patients with Alzheimer´s disease with PSEN1/2 mutations have defective tissue patterning and altered development. CELL REPORTS. CAMBRIDGE: CELL PRESS, 2023, vol. 42, No 11, p. 1-27. ISSN 2211-1247. Available from: https://dx.doi.org/10.1016/j.celrep.2023.113310.
      More: https://is.muni.cz/publication/2329980/en
    13. Cloudification of scientific experimental data using Onedata
      SVOBODA, Tomáš, Aleš KŘENEK, Łukasz OPIOŁA, Andrea MANZI and Josef HANDL. Cloudification of scientific experimental data using Onedata. In EGI Conference 2023. 2023.
      More: https://is.muni.cz/publication/2294402/en
    14. Combination of Urinary MiR-501 and MiR-335 With Current Clinical Diagnostic Parameters as Potential Predictive Factors of Prostate Biopsy Outcome
      JURÁČEK, Jaroslav, Marie MĄDRZYK, Karolína TRACHTOVÁ, Michaela RUČKOVÁ, Júlia BOHOŠOVÁ, Dominik A. BARTH, Martin PICHLER, Michal STANÍK and Ondřej SLABÝ. Combination of Urinary MiR-501 and MiR-335 With Current Clinical Diagnostic Parameters as Potential Predictive Factors of Prostate Biopsy Outcome. CANCER GENOMICS & PROTEOMICS. ATHENS: INT INST ANTICANCER RESEARCH, 2023, vol. 20, No 3, p. 308-316. ISSN 1109-6535. Available from: https://dx.doi.org/10.21873/cgp.20383.
      More: https://is.muni.cz/publication/2293478/en
    15. CopAS: A Big Data Forensic Analytics System
      MACÁK, Martin, Tomáš REBOK, Matúš ŠTOVČIK, Mouzhi GE, Bruno ROSSI and Barbora BÜHNOVÁ. CopAS: A Big Data Forensic Analytics System. Online. In Proceedings of the 8th International Conference on Internet of Things, Big Data and Security IoTBDS - Volume 1. Setubal, Portugal: SciTePress, 2023, p. 150-161. ISBN 978-989-758-643-9. Available from: https://dx.doi.org/10.5220/0011929000003482.
      More: https://is.muni.cz/publication/2269259/en
    16. CoPAS: the Modular Data Analytics Tool (software)
      REBOK, Tomáš and Ondřej MACHALA. CoPAS: the Modular Data Analytics Tool. 2023.
      More: https://is.muni.cz/publication/2316749/en
    17. Cyberspace 2023
      POLČÁK, Radim, Jakub MÍŠEK, Matěj MYŠKA, Jakub HARAŠTA, Pavel LOUTOCKÝ, Bettina BACHER, Václav STUPKA, Michal KOŠČÍK, David ŠMAHEL, Monika METYKOVÁ, Herbert HRACHOVEC, Andreas KIRCHNER, Alena MACKOVÁ, Jakub MACEK, Dan Jerker Börje SVANTESSON, Erich SCHWEIGHOFER, Hana MACHÁČKOVÁ, Zbyněk LOEBL, Andreas WIEBE, Tamás SZÁDECZKY, Jan HOSPES, Nikolaus FORGÓ, Michal ČERNÝ, Jiří MAREK and Alex IVANČO. Cyberspace 2023. 2023.
      More: https://is.muni.cz/publication/2362877/en
    18. Easy Deployment of Dask and Jupyter Notebooks on Managed Kubernetes
      HEJTMÁNEK, Lukáš, Adrián ROŠINEC and Sebastian LUNA-VALERO. Easy Deployment of Dask and Jupyter Notebooks on Managed Kubernetes. In EGI Conference 2023. 2023.
      More: https://is.muni.cz/publication/2293257/en
    19. Enhancing Data Accessibility: Strategies and Tools for Effective Metadata Management
      ROŠINEC, Adrián, Tomáš SVOBODA, Tomáš RAČEK, Aleš KŘENEK and Radka SVOBODOVÁ. Enhancing Data Accessibility: Strategies and Tools for Effective Metadata Management. In IBERGRID 2023. 2023.
      More: https://is.muni.cz/publication/2320317/en
    20. Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials
      HERREROS, David, Roy R. LEDERMAN, James M. KRIEGER, Amaya JIMÉNEZ-MORENO, Marta MARTÍNEZ, David MYŠKA, David STŘELÁK, Jiří FILIPOVIČ, Carlos O. S. SORZANO and José M. CARAZO. Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials. Nature Communications. 2023, vol. 14, No 1, p. 1-10. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-023-35791-y.
      More: https://is.muni.cz/publication/2247618/en
    21. Introduction to Onedata at CEITEC MU and in Czech National Repository Platform
      SVOBODA, Tomáš, Radka SVOBODOVÁ, David ANTOŠ, Adrián ROŠINEC and Aleš KŘENEK. Introduction to Onedata at CEITEC MU and in Czech National Repository Platform. In MATECHat meeting. 2023.
      More: https://is.muni.cz/publication/2361077/en
    22. Kernel Tuning Toolkit
      PETROVIČ, Filip and Jiří FILIPOVIČ. Kernel Tuning Toolkit. SoftwareX. Elsevier, 2023, vol. 22, neuveden, p. 1-6. ISSN 2352-7110. Available from: https://dx.doi.org/10.1016/j.softx.2023.101385.
      More: https://is.muni.cz/publication/2271637/en
    23. Management of life-science data and their metadata
      RAČEK, Tomáš, Tomáš SVOBODA and Radka SVOBODOVÁ. Management of life-science data and their metadata. In XXII. setkání biochemiků a molekulárních biologů. 2023.
      More: https://is.muni.cz/publication/2339518/en
    24. Onedata4Sci: Life-science experimental datasets management system
      ROŠINEC, Adrián, Tomáš SVOBODA, Tomáš RAČEK, Josef HANDL, Jozef SABO, Aleš KŘENEK and Radka SVOBODOVÁ. Onedata4Sci: Life-science experimental datasets management system. In 3D-BioInfo | ISCB 3D-SIG | ELIXIR Czech Republic Structural Bioinformatics. 2023.
      More: https://is.muni.cz/publication/2340017/en
    25. Privacy risks of whole-slide image sharing in digital pathology
      HOLUB, Petr, Heimo MÜLLER, Tomáš BÍL, Luca PIREDDU, Markus PLASS, Fabian PRASSER, Irene SCHLÜNDER, Kurt ZATLOUKAL, Rudolf NENUTIL and Tomáš BRÁZDIL. Privacy risks of whole-slide image sharing in digital pathology. Nature Communications. 2023, vol. 14, No 2577, p. 1-15. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-023-37991-y.
      More: https://is.muni.cz/publication/2280138/en
    26. Provenance of specimen and data – A prerequisite for AI development in computational pathology
      PLASS, Markus, Rudolf WITTNER, Petr HOLUB, Francesca FREXIA, Cecilia MASCIA, Matej GALLO, Heimo MÜLLER and Jörg GEIGER. Provenance of specimen and data – A prerequisite for AI development in computational pathology. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, vol. 78, DEC, p. 22-28. ISSN 1871-6784. Available from: https://dx.doi.org/10.1016/j.nbt.2023.09.006.
      More: https://is.muni.cz/publication/2317118/en
    27. Public (Health) Sector and Academia
      ANTOL, Matej, Michal RŮŽIČKA, Luděk MATYSKA and Jiří MAREK. Public (Health) Sector and Academia. In Martin Komenda. Data-Driven Decision-Making in Medical Education and Healthcare. First edition. Brno: Masaryk University, 2023, p. 51-66. Data Rulezzzz! ISBN 978-80-280-0392-0.
      More: https://is.muni.cz/publication/2341268/en
    28. pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support
      VÁVRA, Ondřej, Jakub BERANEK, Jan ŠTOURAČ, Martin SURKOVSKY, Jiří FILIPOVIČ, Jiří DAMBORSKÝ, Jan MARTINOVIC and David BEDNÁŘ. pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinformatics. Oxford: Oxford University Press, 2023, vol. 39, No 8, p. 1-3. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btad443.
      More: https://is.muni.cz/publication/2309997/en
    29. Reproducible experiments with Learned Metric Index Framework
      SLANINÁKOVÁ, Terézia, Matej ANTOL, Jaroslav OĽHA, Vlastislav DOHNAL, Susana LADRA and Miguel A. MARTÍNEZ-PRIETO. Reproducible experiments with Learned Metric Index Framework. Information systems. Elsevier, 2023, vol. 118, No 1, p. 102255-102270. ISSN 0306-4379. Available from: https://dx.doi.org/10.1016/j.is.2023.102255.
      More: https://is.muni.cz/publication/2301611/en
    30. Sada pro odlišení indolentního a agresivního karcinomu prostaty (Kit for differentiating indolent and aggressive prostate cancer)
      SLABÝ, Ondřej, Jaroslav JURÁČEK and Michal STANÍK. Sada pro odlišení indolentního a agresivního karcinomu prostaty (Kit for differentiating indolent and aggressive prostate cancer). 2023.
      More: https://is.muni.cz/publication/2269517/en
    31. Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability
      GALLO, Matej, Vojtěch KRAJŇANSKÝ, Rudolf NENUTIL, Petr HOLUB and Tomáš BRÁZDIL. Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, vol. 78, December, p. 52-67. ISSN 1871-6784. Available from: https://dx.doi.org/10.1016/j.nbt.2023.09.008.
      More: https://is.muni.cz/publication/2326025/en
    32. SISAP 2023 Indexing Challenge – Learned Metric Index
      SLANINÁKOVÁ, Terézia, David PROCHÁZKA, Matej ANTOL, Jaroslav OĽHA and Vlastislav DOHNAL. SISAP 2023 Indexing Challenge – Learned Metric Index. In Pedreira, O., Estivill-Castro, V. Similarity Search and Applications. SISAP 2023. Lecture Notes in Computer Science, vol 14289. Cham: Springer, 2023, p. 282-290. ISBN 978-3-031-46993-0. Available from: https://dx.doi.org/10.1007/978-3-031-46994-7_24.
      More: https://is.muni.cz/publication/2330525/en
    33. Text-to-Motion Retrieval: Towards Joint Understanding of Human Motion Data and Natural Language
      MESSINA, Nicola, Jan SEDMIDUBSKÝ, Falchi FABRIZIO and Tomáš REBOK. Text-to-Motion Retrieval: Towards Joint Understanding of Human Motion Data and Natural Language. Online. In 46th International Conference on Research and Development in Information Retrieval (SIGIR). New York, NY, USA: Association for Computing Machinery, 2023, p. 2420-2425. ISBN 978-1-4503-9408-6. Available from: https://dx.doi.org/10.1145/3539618.3592069.
      More: https://is.muni.cz/publication/2273418/en
    34. Towards a Benchmarking Suite for Kernel Tuners
      TØRRING, Jacob O, van Werkhoven BEN, Filip PETROVIČ, Floris-Jan WILLEMSEN, Jiří FILIPOVIČ and Anne C ELSTER. Towards a Benchmarking Suite for Kernel Tuners. Online. In 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW). neuveden: IEEE, 2023, p. 724-733. ISBN 979-8-3503-1199-0. Available from: https://dx.doi.org/10.1109/IPDPSW59300.2023.00124.
      More: https://is.muni.cz/publication/2306557/en
    35. Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness
      DAVID, Romain, Audrey RICHARD, Claire CONNELLAN, Katharina LAUER, Maria Luisa CHIUSANO, Carole GOBLE, Martin HOUDE, Isabel KEMMER, Antje KEPPLER, Philippe LIEUTAUD, Christian OHMANN, Maria PANAGIOTOPOULOU, Sara Raza KHAN, Arina RYBINA, Stian SOILAND-REYES, Charlotte WIT, Rudolf WITTNER, Rafael Andrade BUONO, Sarah Arnaud MARSH, Pauline AUDERGON, Dylan BONFILS, Carazo JOSE-MARIA, Remi CHARREL, Frederik COPPENS, Wolfgang FECKE, Claudia FILIPPONE, Eva Garcia ALVAREZ, Sheraz GUL, Henning HERMJAKOB, Katja HERZOG, Petr HOLUB, Lukasz KOZERA, Allyson LISTER, José LÓPEZ-CORONADO, Bénédicte MADON, Kurt MAJCEN, William MARTIN, Wolfgang MÜLLER, Elli PAPADOPOULOU, Christine M.A. PRAT, Paolo ROMANO, Sansone SUSANNA-ASSUNTA, Gary SAUNDERS, Niklas BLOMBERG and Jonathan EWBANK. Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness. Data Science Journal. Ubiquity Press, 2023. ISSN 1683-1470. Available from: https://dx.doi.org/10.5334/dsj-2023-035.
      More: https://is.muni.cz/publication/2353863/en
    36. Umpalumpa: a framework for efficient execution of complex image processing workloads on heterogeneous nodes
      STŘELÁK, David, David MYŠKA, Filip PETROVIČ, Jan POLÁK, Jaroslav OĽHA and Jiří FILIPOVIČ. Umpalumpa: a framework for efficient execution of complex image processing workloads on heterogeneous nodes. Computing. Springer, 2023, vol. 105, No 11, p. 2389-2417. ISSN 0010-485X. Available from: https://dx.doi.org/10.1007/s00607-023-01190-w.
      More: https://is.muni.cz/publication/2293221/en
    37. xOpat: eXplainable Open Pathology Analysis Tool
      HORÁK, Jiří, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ, Tomáš BRÁZDIL, Petr HOLUB, Martin KAČENGA, Matej GALLO, Rudolf NENUTIL, Jan BYŠKA and Vít RUSŇÁK. xOpat: eXplainable Open Pathology Analysis Tool. COMPUTER GRAPHICS FORUM. England: Wiley, 2023, vol. 42, No 3, p. 63-73. ISSN 0167-7055. Available from: https://dx.doi.org/10.1111/cgf.14812.
      More: https://is.muni.cz/publication/2290959/en
    38. ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis
      HERREROS, David, Jakub KISKA, Erney RAMÍREZ-APORTELA, Jiří FILIPOVIČ, José María CARAZO and Carlos Oscar SORZANO. ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis. Journal of Molecular Biology. Elsevier, 2023, vol. 435, No 9, p. 1-14. ISSN 0022-2836. Available from: https://dx.doi.org/10.1016/j.jmb.2023.168088.
      More: https://is.muni.cz/publication/2276179/en

    2022

    1. Automated annotations of epithelial cells and stroma in hematoxylin–eosin-stained whole-slide images using cytokeratin re-staining
      BRÁZDIL, Tomáš, Matej GALLO, Rudolf NENUTIL, Andrej KUBANDA, Martin TOUFAR and Petr HOLUB. Automated annotations of epithelial cells and stroma in hematoxylin–eosin-stained whole-slide images using cytokeratin re-staining. The Journal of Pathology: Clinical Research. 2022, vol. 8, No 2, p. 129-142. ISSN 2056-4538. Available from: https://dx.doi.org/10.1002/cjp2.249.
      More: https://is.muni.cz/publication/1801217/en
    2. Automatic storing, sharing and archiving datasets with Onedata
      SVOBODA, Tomáš, Aleš KŘENEK and Josef HANDL. Automatic storing, sharing and archiving datasets with Onedata. In EGI Conference 2022. 2022.
      More: https://is.muni.cz/publication/2261877/en
    3. Automating scientific dataset management and processing using Onedata
      SVOBODA, Tomáš, Aleš KŘENEK and Josef HANDL. Automating scientific dataset management and processing using Onedata. In IBERGRID 2022. 2022.
      More: https://is.muni.cz/publication/2261899/en
    4. Improving ligand transport trajectory within flexible receptor in CaverDock
      NĚMCOVÁ, Petra, Jana HOZZOVÁ and Jiří FILIPOVIČ. Improving ligand transport trajectory within flexible receptor in CaverDock. Online. In SAC '22: Proceedings of the 37th ACM/SIGAPP Symposium on Applied Computing. USA: Association for Computing Machinery, 2022, p. 619-626. ISBN 978-1-4503-8713-2. Available from: https://dx.doi.org/10.1145/3477314.3506988.
      More: https://is.muni.cz/publication/1853582/en
    5. Learned Indexing in Proteins: Extended Work on Substituting Complex Distance Calculations with Embedding and Clustering Techniques
      OĽHA, Jaroslav, Terézia SLANINÁKOVÁ, Martin GENDIAR, Matej ANTOL and Vlastislav DOHNAL. Learned Indexing in Proteins: Extended Work on Substituting Complex Distance Calculations with Embedding and Clustering Techniques. arXiv, 2022. Available from: https://dx.doi.org/10.48550/ARXIV.2208.08910.
      More: https://is.muni.cz/publication/2212035/en
    6. Learned Indexing in Proteins: Substituting Complex Distance Calculations with Embedding and Clustering Techniques
      OĽHA, Jaroslav, Terézia SLANINÁKOVÁ, Martin GENDIAR, Matej ANTOL and Vlastislav DOHNAL. Learned Indexing in Proteins: Substituting Complex Distance Calculations with Embedding and Clustering Techniques. In Tomáš Skopal, Fabrizio Falchi, Jakub Lokoč, Maria Luisa Sapino, Ilaria Bartolini, Marco Patella. Similarity Search and Applications, 15th International Conference, SISAP 2022, Bologna, Italy, October 5–7, 2022, Proceedings. 1st ed. Cham: Springer Cham, 2022, p. 274-282. ISBN 978-3-031-17848-1. Available from: https://dx.doi.org/10.1007/978-3-031-17849-8_22.
      More: https://is.muni.cz/publication/2212037/en
    7. Lightweight Distributed Provenance Model for Complex Real–world Environments
      WITTNER, Rudolf, Cecilia MASCIA, Matej GALLO, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Jörg GEIGER and Petr HOLUB. Lightweight Distributed Provenance Model for Complex Real–world Environments. Scientific Data. Berlin: Nature Research, 2022, vol. 2022, No 9, p. 1-19. ISSN 2052-4463. Available from: https://dx.doi.org/10.1038/s41597-022-01537-6.
      More: https://is.muni.cz/publication/2212026/en
    8. Managed Kubernetes — Next Gen Academic Infrastructure?
      SPIŠAKOVÁ, Viktória, Adrián ROŠINEC, Lukáš HEJTMÁNEK and Matej ANTOL. Managed Kubernetes — Next Gen Academic Infrastructure? In EGI Conference 2022. 2022.
      More: https://is.muni.cz/publication/2262057/en
    9. On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy
      SORZANO, Carlos, Amaya JIMÉNEZ-MORENO, David MALUENDA, Marta MARTÍNEZ, Erney RAMÍREZ-APORTELA, James KRIEGER, Roberto MELERO, Ana CUERVO, Javier CONESA, Jiří FILIPOVIČ, Pablo CONESA, Laura del CAÑO, Yunior FONSECA, Jorge Jiménez-de LA MORENA, Patricia LOSANA, Ruben SÁNCHEZ-GARCÍA, David STŘELÁK, Estrella FERNÁNDEZ-GIMÉNEZ, Federico DE ISIDRO-GÓMEZ, David HERREROS, Jose Luis VILAS, Roberto MARABINI and Jose Maria CARAZO. On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy. Acta Crystallographica Section D: Structural Biology. Chester: International Union of Crystallography, 2022, vol. 78, No 4, p. 410-423. ISSN 2059-7983. Available from: https://dx.doi.org/10.1107/S2059798322001978.
      More: https://is.muni.cz/publication/1842337/en
    10. Podporujeme nadané prvňáčky (We support gifted pupils in the first grades)
      PORTEŠOVÁ, Šárka, Eva NOVÁKOVÁ, Růžena BLAŽKOVÁ, Michal JABŮREK, Ondřej STRAKA, Michal RŮŽIČKA, Matěj SMETANA, Jaroslav TOČÍK, Jana UNČOVSKÁ, Kateřina KREPSOVÁ, Ondřej DVOŘÁK, Ondřej VORÁČ, Jan KOTTMAN, Zdeněk NOVÁK, Petra BUŠKOVÁ, Jindřiška SVOBODOVÁ, Eva MALACHOVÁ and Tereza HRSTKOVÁ. Podporujeme nadané prvňáčky (We support gifted pupils in the first grades). 2022.
      More: https://is.muni.cz/publication/2227397/en
    11. Position paper on management of personal data in environment and health research in Europe
      GOVARTS, Eva, Liese GILLES, Stephanie BOPP, Petr HOLUB, Leslie MATALONGA, Roel VERMEULEN, Martine VRIJHEID, Sergi BELTRAN, Mette HARTLEV, Sarah JONES, Laura Rodriguez MARTIN, Arnout STANDAERT, Morris A SWERTZ, Jan THEUNIS, Xenia TRIER, Nina VOGEL, Koert VAN ESPEN, Sylvie REMY and Greet SCHOETERS. Position paper on management of personal data in environment and health research in Europe. Environment International. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2022, vol. 165. ISSN 0160-4120. Available from: https://dx.doi.org/10.1016/j.envint.2022.107334.
      More: https://is.muni.cz/publication/1859960/en
    12. The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes
      FREXIA, Francesca, Cecilia MASCIA, Rudolf WITTNER, Markus PLASS, Heimo MÜLLER, Jörg GEIGER and Petr HOLUB. The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes. In Challenges of Trustable AI and Added-Value on Health. 2022. Available from: https://dx.doi.org/10.3233/SHTI220489.
      More: https://is.muni.cz/publication/2212018/en
    13. Using hardware performance counters to speed up autotuning convergence on GPUs
      FILIPOVIČ, Jiří, Jana HOZZOVÁ, Amin NEZARAT, Jaroslav OĽHA and Filip PETROVIČ. Using hardware performance counters to speed up autotuning convergence on GPUs. Journal of Parallel and Distributed Computing. Elsevier, 2022, vol. 160, February, p. 16-35. ISSN 0743-7315. Available from: https://dx.doi.org/10.1016/j.jpdc.2021.10.003.
      More: https://is.muni.cz/publication/1799520/en

    2021

    1. Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion
      STŘELÁK, David, Amaya JIMÉNEZ-MORENO, José VILAS, Erney RAMÍREZ-APORTELA, Ruben SÁNCHEZ-GARCÍA, David MALUENDA, Javier VARGAS, David HERREROS, Estrella FERNÁNDEZ-GIMÉNEZ, Federico DE ISIDRO-GÓMEZ, Jan HORÁČEK, David MYŠKA, Martin HORÁČEK, Pablo CONESA, Yunior FONSECA-REYNA, Jorge JIMÉNEZ, Marta MARTÍNEZ, Mohamad HARASTANI, Slavica JONIĆ, Jiří FILIPOVIČ, Roberto MARABINI, José CARAZO and Carlos SORZANO. Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion. Molecules. Mayer und Muller, 2021, vol. 26, No 20, p. 1-14. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules26206224.
      More: https://is.muni.cz/publication/1798282/en
    2. Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials
      HERREROS, David, Roy R LEDERMAN, James KRIEGER, Amaya JIMENEZ-MORENO, Marta MARTINEZ, David MYŠKA, David STŘELÁK, Jiří FILIPOVIČ, Ivet BAHAR, Jose Maria CARAZO and Carlos Oscar S SANCHEZ. Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials. International Union of Crystallography Journals. online, 2021, vol. 8, No 6, p. 992-1005. ISSN 2052-2525. Available from: https://dx.doi.org/10.1107/S2052252521008903.
      More: https://is.muni.cz/publication/1798284/en
    3. BBMRI-ERIC Negotiator: Implementing Efficient Access to Biobanks
      REIHS, Robert, Rumyana PROYNOVA, Saher MAQSOOD, Maxmilian ATAIAN, Martin LABLANS, Philip R. QUINLAN, Emma LAWRENCE, Erinna BOWMAN, Esther VAN ENCKEVORT, Dominik František BUČÍK, Heimo MÜLLER and Petr HOLUB. BBMRI-ERIC Negotiator: Implementing Efficient Access to Biobanks. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2021, 8 pp. ISSN 1947-5535. Available from: https://dx.doi.org/10.1089/bio.2020.0144.
      More: https://is.muni.cz/publication/1782968/en
    4. CICM'21 Systems Entries
      LÍŠKA, Martin, Dávid LUPTÁK, Vít STARÝ NOVOTNÝ, Michal RŮŽIČKA, Boris SHMINKE, Petr SOJKA, Michal ŠTEFÁNIK and Makarius WENZEL. CICM'21 Systems Entries. Online. In 978-3-030-81097-9. INTELLIGENT COMPUTER MATHEMATICS (CICM 2021). CHAM: SPRINGER INTERNATIONAL PUBLISHING AG, 2021, p. 245-248. ISBN 978-3-030-81096-2. Available from: https://dx.doi.org/10.1007/978-3-030-81097-9_20.
      More: https://is.muni.cz/publication/2302943/en
    5. Computational enzyme design for metabolic engineering
      DAMBORSKÝ, Jiří, David BEDNÁŘ, Zbyněk PROKOP, Martin MAREK, Stanislav MAZURENKO, Jan ŠTOURAČ, Sérgio Manuel MARQUES, Gabriela Filipa FONSECA PINTO, Joan PLANAS IGLESIAS, Miloš MUSIL, Jiří HON, Ondřej VÁVRA, Rayyan Tariq KHAN, Jiří FILIPOVIČ and Barbora KOZLÍKOVÁ. Computational enzyme design for metabolic engineering. In The 45th FEBS Congress. 2021. ISSN 2211-5463.
      More: https://is.muni.cz/publication/1876012/en
    6. Data-driven Learned Metric Index: an Unsupervised Approach
      SLANINÁKOVÁ, Terézia, Matej ANTOL, Jaroslav OĽHA and Vlastislav DOHNAL. Data-driven Learned Metric Index: an Unsupervised Approach. In 14th International Conference on Similarity Search and Applications (SISAP 2021). Cham: Springer, 2021, p. 81-94. ISBN 978-3-030-89656-0. Available from: https://dx.doi.org/10.1007/978-3-030-89657-7_7.
      More: https://is.muni.cz/publication/1790340/en
    7. DeepAlign, a 3D Alignment Method based on Regionalized Deep Learning for Cryo-EM
      JIMÉNEZ-MORENO, Amaya, David STŘELÁK, Jiří FILIPOVIČ, José María CARAZO and Carlos Óscar S. SORZANO. DeepAlign, a 3D Alignment Method based on Regionalized Deep Learning for Cryo-EM. Journal of Structural Biology. San Diego,USA: Academic Press, 2021, vol. 213, No 2, p. "107712", 14 pp. ISSN 1047-8477. Available from: https://dx.doi.org/10.1016/j.jsb.2021.107712.
      More: https://is.muni.cz/publication/1757923/en
    8. Enabling Trustworthy and Traceable Research by Non-Repudiable Opaque Provenance in a Distributed Environment
      WITTNER, Rudolf, Jörg GEIGER, Cecilia MASCIA, Francesca FREXIA, Heimo MULLER and Petr HOLUB. Enabling Trustworthy and Traceable Research by Non-Repudiable Opaque Provenance in a Distributed Environment. In Provenance Week 2021; Workshop on Provenance for Transparent Research. 2021.
      More: https://is.muni.cz/publication/1783838/en
    9. GA4GH: International policies and standards for data sharing across genomic research and healthcare
      REHM, Heidi L, Angela J H PAGE, Lindsay SMITH, Jeremy B ADAMS, Gil ALTEROVITZ, Lawrence J BABB, Maxmillian P BARKLEY, Michael BAUDIS, Michael J S BEAUVAIS, Tim BECK, Jacques S BECKMANN, Sergi BELTRAN, David BERNICK, Alexander BERNIER, James K BONFIELD, Tiffany F BOUGHTWOOD, Guillaume BOURQUE, Sarion R BOWERS, Anthony J BROOKES, Michael BRUDNO, Matthew H BRUSH, David BUJOLD, Tony BURDETT, Orion J BUSKE, Moran N CABILI, Daniel L CAMERON, Robert J CARROLL, Esmeralda CASAS-SILVA, Debyani CHAKRAVARTY, Bimal P CHAUDHARI, Shu Hui CHEN, J Michael CHERRY, Justina CHUNG, Melissa CLINE, Hayley L CLISSOLD, Robert M COOK-DEEGAN, Melanie COURTOT, Fiona CUNNINGHAM, Miro CUPAK, Robert M DAVIES, Danielle DENISKO, Megan J DOERR, Lena I DOLMAN, Edward S DOVE, L Jonathan DURSI, Stephanie O M DYKE, James A EDDY, Karen EILBECK, Kyle P ELLROTT, Susan FAIRLEY, Khalid A FAKHRO, Helen V FIRTH, Michael S FITZSIMONS, Marc FIUME, Paul FLICEK, Ian M FORE, Mallory A FREEBERG, Robert R FREIMUTH, Lauren A FROMONT, Jonathan FUERTH, Clara L GAFF, Weiniu GAN, Elena M GHANAIM, David GLAZER, Robert C GREEN, Malachi GRIFFITH, Obi L GRIFFITH, Robert L GROSSMAN, Tudor GROZA, Jaime M Guidry AUVIL, Roderic GUIGO, Dipayan GUPTA, Melissa A HAENDEL, Ada HAMOSH, David P HANSEN, Reece K HART, Dean Mitchell HARTLEY, David HAUSSLER, Rachele M HENDRICKS-STURRUP, Calvin W L HO, Ashley E HOBB, Michael M HOFFMAN, Oliver M HOFMANN, Petr HOLUB, Jacob Shujui HSU, Jean-Pierre HUBAUX, Sarah E HUNT, Ammar HUSAMI, Julius O JACOBSEN, Saumya S JAMUAR, Elizabeth L JANES, Francis JEANSON, Aina JENE, Amber L JOHNS, Yann JOLY, Steven J M JONES, Alexander KANITZ, Kazuto KATO, Thomas M KEANE, Kristina KEKESI-LAFRANCE, Jerome KELLEHER, Giselle KERRY, Seik-Soon KHOR, Bartha M KNOPPERS, Melissa A KONOPKO, Kenjiro KOSAKI, Martin KUBA, Jonathan LAWSON, Rasko LEINONEN, Stephanie LI, Michael F LIN, Mikael LINDEN, Xianglin LIU, Isuru Udara LIYANAGE, Javier LOPEZ, Anneke M LUCASSEN, Michael LUKOWSKI, Alice L MANN, John MARSHALL, Michele MATTIONI, Alejandro METKE-JIMENEZ, Anna MIDDLETON, Richard J MILNE, Fruzsina MOLNAR-GABOR, Nicola MULDER, Monica C MUNOZ-TORRES, Rishi NAG, Hidewaki NAKAGAWA, Jamal NASIR, Arcadi NAVARRO, Tristan H NELSON, Ania NIEWIELSKA, Amy NISSELLE, Jeffrey NIU, Tommi H NYRONEN, Brian D CONNOR, Sabine OESTERLE, Soichi OGISHIMA, Vivian Ota WANG, Laura A D PAGLIONE, Emilio PALUMBO, Helen E PARKINSON, Anthony A PHILIPPAKIS, Angel D PIZARRO, Andreas PRLIC, Jordi RAMBLA, Augusto RENDON, Renee A RIDER, Peter N ROBINSON, Kurt W RODARMER, Laura Lyman RODRIGUEZ, Alan F RUBIN, Manuel RUEDA, Gregory A RUSHTON, Rosalyn S RYAN, Gary I SAUNDERS, Helen SCHUILENBURG, Torsten SCHWEDE, Serena SCOLLEN, Alexander SENF, Nathan C SHEFFIELD, Neerjah SKANTHARAJAH, Albert V SMITH, Heidi J SOFIA, Dylan SPALDING, Amanda B SPURDLE, Zornitza STARK, Lincoln D STEIN, Makoto SUEMATSU, Patrick TAN, Jonathan A TEDDS, Alastair A THOMSON, Adrian THOROGOOD, Timothy L TICKLE, Katsushi TOKUNAGA, Juha TOMROOS, David TORRENTS, Sean UPCHURCH, Alfonso VALENCIA, Roman Valls GUIMERA, Jessica VAMATHEVAN, Susheel VARMA, Danya F VEARS, Coby VINER, Craig VOISIN, Alex H WAGNER, Susan E WALLACE, Brian P WALSH, Marc S WILLIAMS, Eva C WINKLER, Barbara J WOLD, Grant M WOOD, J Patrick WOOLLEY, Chisato YAMASAKI, Andrew D YATES, Christina K YUNG, Lyndon J ZASS, Ksenia ZAYTSEVA, Junjun ZHANG, Peter GOODHAND, Kathryn NORTH and Ewan BIRNEY. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genomics. AMSTERDAM: Cell Press, 2021, vol. 1, No 2, p. 1-33. ISSN 2666-979X. Available from: https://dx.doi.org/10.1016/j.xgen.2021.100029.
      More: https://is.muni.cz/publication/2279798/en
    10. GA4GH: International policies and standards for data sharing across genomic research and healthcare
      REHM, Heidi, Angela PAGE, Lindsay SMITH, Jeremy ADAMS, Gil ALTEROVITZ, Lawrence BABB, Maxmillian BARKLEY, Michael BAUDIS, Michael BEAUVAIS, Tim BECK, Jacques BECKMANN, Sergi BELTRAN, David BERNICK, Alexander BERNIER, James BONFIELD, Tiffany BOUGHTWOOD, Guillaume BOURQUE, Sarion BOWERS, Anthony BROOKES, Michael BRUDNO, Matthew BRUSH, David BUJOLD, Tony BURDETT, Orion BUSKE, Moran CABILI, Daniel CAMERON, Robert CARROLL, Esmeralda CASAS-SILVA, Debyani CHAKRAVARTY, Bimal CHAUDHARI, Shu Hui CHEN, Michael CHERRY, Justina CHUNG, Melissa CLINE, Hayley CLISSOLD, Robert COOK-DEEGAN, Mélanie COURTOT, Fiona CUNNINGHAM, Miro CUPAK, Robert DAVIES, Danielle DENISKO, Megan DOERR, Lena DOLMAN, Edward DOVE, Jonathan DURSI, Stephanie DYKE, James EDDY, Karen EILBECK, Kyle ELLROTT, Susan FAIRLEY, Khalid FAKHRO, Helen FIRTH, Michael FITZSIMONS, Marc FIUME, Paul FLICEK, Ian FORE, Mallory FREEBERG, Robert FREIMUTH, Lauren FROMONT, Jonathan FUERTH, Clara GAFF, Weiniu GAN, Elena GHANAIM, David GLAZER, Robert GREEN, Malachi GRIFFITH, Obi GRIFFITH, Robert GROSSMAN, Tudor GROZA, Jaime Guidry AUVIL, Roderic GUIGÓ, Dipayan GUPTA, Melissa HAENDEL, Ada HAMOSH, David HANSEN, Reece HART, Dean Mitchell HARTLEY, David HAUSSLER, Rachele HENDRICKS-STURRUP, Calvin HO, Ashley HOBB, Michael HOFFMAN, Oliver HOFMANN, Petr HOLUB, Jacob Shujui HSU, Jean-Pierre HUBAUX, Sarah HUNT, Ammar HUSAMI, Julius JACOBSEN, Saumya JAMUAR, Elizabeth JANES, Francis JEANSON, Aina JENÉ, Amber JOHNS, Yann JOLY, Steven JONES, Alexander KANITZ, Kazuto KATO, Thomas KEANE, Kristina KEKESI-LAFRANCE, Jerome KELLEHER, Giselle KERRY, Seik-Soon KHOR, Bartha KNOPPERS, Melissa KONOPKO, Kenjiro KOSAKI, Martin KUBA, Jonathan LAWSON, Rasko LEINONEN, Stephanie LI, Michael LIN, Mikael LINDEN, Xianglin LIU, Isuru Udara LIYANAGE, Javier LOPEZ, Anneke LUCASSEN, Michael LUKOWSKI, Alice MANN, John MARSHALL, Michele MATTIONI, Alejandro METKE-JIMENEZ, Anna MIDDLETON, Richard MILNE, Fruzsina MOLNÁR-GÁBOR, Nicola MULDER, Monica MUNOZ-TORRES, Rishi NAG, Hidewaki NAKAGAWA, Jamal NASIR, Arcadi NAVARRO, Tristan NELSON, Ania NIEWIELSKA, Amy NISSELLE, Jeffrey NIU, Tommi NYRÖNEN, O Connor BRIAN, Sabine OESTERLE, Soichi OGISHIMA, Vivian Ota WANG, Laura PAGLIONE, Emilio PALUMBO, Helen PARKINSON, Anthony PHILIPPAKIS, Angel PIZARRO, Andreas PRLIC, Jordi RAMBLA, Augusto RENDON, Renee RIDER, Peter ROBINSON, Kurt RODARMER, Laura Lyman RODRIGUEZ, Alan RUBIN, Manuel RUEDA, Gregory RUSHTON, Rosalyn RYAN, Gary SAUNDERS, Helen SCHUILENBURG, Torsten SCHWEDE, Serena SCOLLEN, Alexander SENF, Nathan SHEFFIELD, Neerjah SKANTHARAJAH, Albert SMITH, Heidi SOFIA, Dylan SPALDING, Amanda SPURDLE, Zornitza STARK, Lincoln STEIN, Makoto SUEMATSU, Patrick TAN, Jonathan TEDDS, Alastair THOMSON, Adrian THOROGOOD, Timothy TICKLE, Katsushi TOKUNAGA, Juha TÖRNROOS, David TORRENTS, Sean UPCHURCH, Alfonso VALENCIA, Roman VALLS GUIMERA, Jessica VAMATHEVAN, Susheel VARMA, Danya VEARS, Coby VINER, Craig VOISIN, Alex WAGNER, Susan WALLACE, Brian WALSH, Marc WILLIAMS, Eva WINKLER, Barbara WOLD, Grant WOOD, Patrick WOOLLEY, Chisato YAMASAKI, Andrew YATES, Christina YUNG, Lyndon ZASS, Ksenia ZAYTSEVA, Junjun ZHANG, Peter GOODHAND, Kathryn NORTH and Ewan BIRNEY. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genomics. Cell Press, 2021, vol. 2021, No 1, p. 1-9. ISSN 2666-979X. Available from: https://dx.doi.org/10.1016/j.xgen.2021.100029.
      More: https://is.muni.cz/publication/1803800/en
    11. GA4GH Passport standard for digital identity and access permissions
      VOISIN, Craig, Mikael LINDEN, Stephanie DYKE, Sarion BOWERS, Pinar ALPER, Maxmillian BARKLEY, David BERNICK, Jianpeng CHAO, Mélanie COURTOT, Francis JEANSON, Melissa KONOPKO, Martin KUBA, Jonathan LAWSON, Jaakko LEINONEN, Stephanie LI, Vivian WANG, Anthony PHILIPPAKIS, Kathy REINOLD, Gregory RUSHTON, J. Dylan SPALDING, Juha TÖRNROOS, Ilya TULCHINSKY, Jaime M. Guidry AUVIL and Tommi NYRÖNEN. GA4GH Passport standard for digital identity and access permissions. Cell Genomics. Elsevier, 2021, vol. 1, No 2, p. "100030", 16 pp. ISSN 2666-979X. Available from: https://dx.doi.org/10.1016/j.xgen.2021.100030.
      More: https://is.muni.cz/publication/1811558/en
    12. Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
      S. SORZANO, Carlos Oscar, Amaya JIMÉNEZ-MORENO, David MALUENDA, Erney RAMÍREZ-APORTELA, Marta MARTÍNEZ, Ana CUERVO, Roberto MELERO, Jose Javier CONESA, Ruben SÁNCHEZ-GARCÍA, David STŘELÁK, Jiří FILIPOVIČ, Estrella FERNÁNDEZ-GIMÉNEZ, Federico DE ISIDRO-GÓMEZ, David HERREROS, Pablo CONESA, Laura DEL CAÑO, Yunior FONSECA, Jorge JIMÉNEZ DE LA MORENA, Jose Ramon MACÍAS, Patricia LOSANA, Roberto MARABINI and Jose-Maria CARAZO. Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods. In Structural Proteomics. Clifton, N.J.: Springer US, 2021, p. 257-289. Methods in Molecular Biology. ISBN 978-1-0716-1405-1. Available from: https://dx.doi.org/10.1007/978-1-0716-1406-8_13.
      More: https://is.muni.cz/publication/1790524/en
    13. Integration of Biobanks in National eHealth Ecosystems Facilitating Long-Term Longitudinal Clinical-Omics Studies and Citizens' Engagement in Research Through eHealthBioR.
      ANTONIADES, Athos, Maria PAPAIOANNOU, Apostolos MALATRAS, Gregory PAPAGREGORIOU, Heimo MULLER, Petr HOLUB, Constantinos DELTAS and Christos N SCHIZAS. Integration of Biobanks in National eHealth Ecosystems Facilitating Long-Term Longitudinal Clinical-Omics Studies and Citizens' Engagement in Research Through eHealthBioR. Online. Frontiers in Digital Health. 2021.
      More: https://is.muni.cz/publication/1853697/en
    14. ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data
      WITTNER, Rudolf, Petr HOLUB, Heimo MÜLLER, Joerg GEIGER, Carole GOBLE, Stian SOILAND-REYES, Luca PIREDDU, Francesca FREXIA, Cecilia MASCIA, Elliot FAIRWEATHER, Jason R SWEDLOW, Josh MOORE, Caterina STRAMBIO, David GRUNWALD and Hiroki NAKAE. ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data. In Lecture Notes in Computer Science. Cham: Springer, 2021, p. 222-225. ISBN 978-3-030-80959-1. Available from: https://dx.doi.org/10.1007/978-3-030-80960-7_16.
      More: https://is.muni.cz/publication/1783840/en
    15. Kernel Tuning Toolkit 2.0 (software)
      PETROVIČ, Filip, Jiří FILIPOVIČ, David STŘELÁK, Jana HOZZOVÁ and Richard TREMBECKÝ. Kernel Tuning Toolkit 2.0. 2021.
      More: https://is.muni.cz/publication/1790347/en
    16. Learned metric index - proposition of learned indexing for unstructured data
      ANTOL, Matej, Jaroslav OĽHA, Terézia SLANINÁKOVÁ and Vlastislav DOHNAL. Learned metric index - proposition of learned indexing for unstructured data. Information Systems. Elsevier, 2021, vol. 100, No 101774, p. 1-12. ISSN 0306-4379. Available from: https://dx.doi.org/10.1016/j.is.2021.101774.
      More: https://is.muni.cz/publication/1757938/en
    17. Metric hull as similarity-aware operator for representing unstructured data
      ANTOL, Matej, Miriama JÁNOŠOVÁ and Vlastislav DOHNAL. Metric hull as similarity-aware operator for representing unstructured data. Pattern Recognition Letters. Amsterdam: Elsevier, 2021, vol. 149, September 2021, p. 91-98. ISSN 0167-8655. Available from: https://dx.doi.org/10.1016/j.patrec.2021.05.011.
      More: https://is.muni.cz/publication/1780258/en
    18. Non-repudiable provenance for clinical decision support systems
      FAIRWEATHER, Elliot, Rudolf WITTNER, Martin CHAPMAN, Petr HOLUB and Vasa CURCIN. Non-repudiable provenance for clinical decision support systems. In Lecture Notes in Computer Science. Cham: Springer, 2021, p. 165-182. ISBN 978-3-030-80959-1. Available from: https://dx.doi.org/10.1007/978-3-030-80960-7_10.
      More: https://is.muni.cz/publication/1674782/en
    19. Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning
      RANGEL PAMPLONA PIZARRO PINTO, José Gaspar, Ondřej VÁVRA, Sérgio Manuel MARQUES, Jiří FILIPOVIČ, David BEDNÁŘ and Jiří DAMBORSKÝ. Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning. Computational and Structural Biotechnology Journal. Amsterdam: Elsevier, 2021, vol. 19, May, p. 3187-3197. ISSN 2001-0370. Available from: https://dx.doi.org/10.1016/j.csbj.2021.05.043.
      More: https://is.muni.cz/publication/1797399/en
    20. Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures
      HOZZOVÁ, Jana, Jiří FILIPOVIČ, Amin NEZARAT, Jaroslav OĽHA and Filip PETROVIČ. Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures. Data in Brief. Elsevier, 2021, vol. 39, December, p. 1-12. ISSN 2352-3409. Available from: https://dx.doi.org/10.1016/j.dib.2021.107631.
      More: https://is.muni.cz/publication/1805266/en
    21. Simulation of Ligand Transport in Receptors Using CaverDock
      HOZZOVÁ, Jana, Ondřej VÁVRA, David BEDNÁŘ and Jiří FILIPOVIČ. Simulation of Ligand Transport in Receptors Using CaverDock. In Flavio Ballante. Protein-Ligand Interactions and Drug Design. New York: Humana, New York, NY, 2021, p. 105-124. Methods in Molecular Biology, vol 2266. ISBN 978-1-0716-1208-8. Available from: https://dx.doi.org/10.1007/978-1-0716-1209-5_6.
      More: https://is.muni.cz/publication/1757928/en
    22. The Data Use Ontology to streamline responsible access to human biomedical datasets
      LAWSON, Jonathan, Moran N CABILI, Giselle KERRY, Tiffany BOUGHTWOOD, Adrian THOROGOOD, Pinar ALPER, Sarion R BOWERS, Rebecca R BOYLES, Anthony J BROOKES, Matthew BRUSH, Tony BURDETT, Hayley CLISSOLD, Stacey DONNELLY, Stephanie O M DYKE, Mallory A FREEBERG, Melissa A HAENDEL, Chihiro HATA, Petr HOLUB, Francis JEANSON, Aina JENE, Minae KAWASHIMA, Shuichi KAWASHIMA, Melissa KONOPKO, Irene KYOMUGISHA, Haoyuan LI, Mikael LINDEN, Laura Lyman RODRIGUEZ, Mizuki MORITA, Nicola MULDER, Jean MULLER, Satoshi NAGAIE, Jamal NASIR, Soichi OGISHIMA, Vivian Ota WANG, Laura D PAGLIONE, Ravi N PANDYA, Helen PARKINSON, Anthony A PHILIPPAKIS, Fabian PRASSER, Jordi RAMBLA, Kathy REINOLD, Gregory A RUSHTON, Andrea SALTZMAN, Gary SAUNDERS, Heidi J SOFIA, John D SPALDING, Morris A SWERTZ, Ilia TULCHINSKY, J ESTHER, van ENCKEVORT, Susheel VARMA, Craig VOISIN, Natsuko YAMAMOTO, Chisato YAMASAKI, Lyndon ZASS, M JAIME, Guidry AUVIL, Tommi H NYRÖNEN and Mélanie COURTOT. The Data Use Ontology to streamline responsible access to human biomedical datasets. Cell Genomics. 2021, vol. 1, No 2, p. 1-9, 12 pp. ISSN 2666-979X. Available from: https://dx.doi.org/10.1016/j.xgen.2021.100028.
      More: https://is.muni.cz/publication/1809677/en
    23. 4D-GRAPHS (software)
      BRÁZDIL, Tomáš, David PORTEŠ, Jiří FILIPOVIČ, Jana HOZZOVÁ, Thomas EVANGELIDIS and Konstantinos TRIPSIANES. 4D-GRAPHS. 2021.
      More: https://is.muni.cz/publication/1756437/en

    2020

    1. A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit
      PETROVIČ, Filip, David STŘELÁK, Jana HOZZOVÁ, Jaroslav OĽHA, Richard TREMBECKÝ, Siegfried BENKNER and Jiří FILIPOVIČ. A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit. Future Generation Computer Systems. Elsevier, 2020, vol. 108, July, p. 161-177. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2020.02.069.
      More: https://is.muni.cz/publication/1630456/en
    2. ANALYZA – Datový sklad (ANALYZA – Dara Warehouse) (software)
      REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Martin DRAŠAR, Daniel TOVARŇÁK, Pavel ZEZULA, Martin MACÁK, Matúš GUOTH, Matej BABEJ, Dávid BRILLA and Martin KAŽIMÍR. ANALYZA – Datový sklad (ANALYZA – Dara Warehouse). 2020.
      More: https://is.muni.cz/publication/1736344/en
    3. ANALYZA – Vizualizační komponenta – Visilant (ANALYZA – Visualization Component – Visilant) (software)
      REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Martin DRAŠAR, Jarešová MIROSLAVA, Barbora KOZLÍKOVÁ, Kristína ZÁKOPČANOVÁ, Pavel ZEZULA, Katarína FURMANOVÁ, Marko ŘEHÁČEK, Jozef BÁTRNA and Daniel PLAKINGER. ANALYZA – Vizualizační komponenta – Visilant (ANALYZA – Visualization Component – Visilant). 2020.
      More: https://is.muni.cz/publication/1736358/en
    4. ANALYZA – Výpočetní a orchestrační subsystém (ANALYZA – Computation and Orchestration Subsystem) (software)
      REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Barbora KOZLÍKOVÁ, Vladimír MÍČ, Filip NÁLEPA, David NOVÁK, Daniel TOVARŇÁK, Pavel ZEZULA, Jakub PESCHEL, Kasanič DENIS, Denisa ŠRÁMKOVÁ, Erik HRICIŠÁK, Vladimír LAZÁRIK and Kristián GUTIČ. ANALYZA – Výpočetní a orchestrační subsystém (ANALYZA – Computation and Orchestration Subsystem). 2020.
      More: https://is.muni.cz/publication/1736351/en
    5. ARCLib (software)
      LHOTÁK, Marin, Martin DUDA, Andrea FOJTŮ, Jan HEJZL, Jan HUTAŘ, Filip KERSCH, Jana KŘÍŽOVÁ, Marek MELICHAR, Martina NEZBEDOVÁ, Miroslav PAVELKA, Eliška PAVLÁSKOVÁ, Jan POKORSKÝ, Michal PŠENIČKA, Ivana ŠLAPÁKOVÁ, Zdeněk TICHÝ, Miroslav BARTOŠEK, Jan BILWACHS, Lukáš HEJTMÁNEK, Zdeněk HRUŠKA, Václav JIROUŠEK, Pavlína KOČIŠOVÁ, Vlastimil KREJČÍŘ, Iveta LODROVÁ, Natalie OSTRÁKOVÁ, Michal RŮŽIČKA, Zdeněk VAŠEK and Petr ŽABIČKA. ARCLib. 2020.
      More: https://is.muni.cz/publication/1772106/en
    6. BBMRI-CZ as a Partner for Personalized Medicine and Translational Medical Research
      DUDOVÁ, Zdenka, Alice HÁLOVÁ, Dalibor VALÍK and Petr HOLUB. BBMRI-CZ as a Partner for Personalized Medicine and Translational Medical Research. In RANK 2020. 2020. ISBN 978-80-87436-17-2.
      More: https://is.muni.cz/publication/1806898/en
    7. BBMRI-ERIC’s contributions to research and knowledge exchange on COVID-19
      HOLUB, Petr, Lukasz KOZERA, Francesco FLORINDI, Esther van ENCKEVORT, Morris SWERTZ, Robert REIHS, Andrea WUTTE, Dalibor VALÍK and Michaela Th MAYRHOFER. BBMRI-ERIC’s contributions to research and knowledge exchange on COVID-19. European Journal of Human Genetics. London: Nature Publishing Group, 2020, vol. 28, No 6, p. 728-731. ISSN 1018-4813. Available from: https://dx.doi.org/10.1038/s41431-020-0634-8.
      More: https://is.muni.cz/publication/1661679/en
    8. CaverDock: A Novel Method for the Fast Analysis of Ligand Transport
      FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE/ACM Transactions on Computational Biology and Bioinformatics. Los Alamitos: IEEE Computer Society, 2020, vol. 17, No 5, p. 1625-1638. ISSN 1545-5963. Available from: https://dx.doi.org/10.1109/TCBB.2019.2907492.
      More: https://is.muni.cz/publication/1514116/en
    9. Expanding the BBMRI-ERIC Directory into a Global Catalogue of COVID-19–Ready Collections: A Joint Initiative of BBMRI-ERIC and ISBER
      CATCHPOOLE, Daniel R, Francesco FLORINDI, Caitlin AHERN, Debra Leiolani GARCIA, Piper MULLINS, Esther Van ENCKEVORT, Andy ZAAYENGA, Michaela Th MAYRHOFER and Petr HOLUB. Expanding the BBMRI-ERIC Directory into a Global Catalogue of COVID-19–Ready Collections: A Joint Initiative of BBMRI-ERIC and ISBER. Biopreservation and Biobanking. 2020, vol. 18, No 5, p. 479-480. Available from: https://dx.doi.org/10.1089/bio.2020.29075.drc.
      More: https://is.muni.cz/publication/1809660/en
    10. Exploiting historical data: Pruning autotuning spaces and estimating the number of tuning steps
      OĽHA, Jaroslav, Jana HOZZOVÁ, Jan FOUSEK and Jiří FILIPOVIČ. Exploiting historical data: Pruning autotuning spaces and estimating the number of tuning steps. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE. HOBOKEN: WILEY, 2020, vol. 32, No 21, p. 1-15. ISSN 1532-0626. Available from: https://dx.doi.org/10.1002/cpe.5962.
      More: https://is.muni.cz/publication/1675386/en
    11. FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electron Microscopy
      STŘELÁK, David, Jiří FILIPOVIČ, Amaya JIMÉNEZ-MORENO, Jose María CARAZO and Carlos Óscar SÁNCHEZ SORZANO. FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electron Microscopy. Electronics. Switzerland: MDPI, 2020, vol. 9, No 6, p. 1-25. ISSN 2079-9292. Available from: https://dx.doi.org/10.3390/electronics9061040.
      More: https://is.muni.cz/publication/1675418/en
    12. Multi-phase ELAStic Aggregates (MELASA) software tool for modeling anisotropic elastic properties of lamellar composites
      FRIÁK, Martin, Dušan LAGO, Nikola KOUTNÁ, David HOLEC, Tomáš REBOK and Mojmír ŠOB. Multi-phase ELAStic Aggregates (MELASA) software tool for modeling anisotropic elastic properties of lamellar composites. Computer Physics Communications. Amsterdam: Elsevier, 2020, vol. 247, FEB 2020, p. 1-9. ISSN 0010-4655. Available from: https://dx.doi.org/10.1016/j.cpc.2019.106863.
      More: https://is.muni.cz/publication/1548536/en
    13. Právní aspekty sdílení dat v rámci informačních technologií konceptu Smart City v dopravě a jejich dopady do práva veřejných zakázek (xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx)
      JELÍNEK, Kamil, Jan ŠLESINGER and Michal PROCHÁZKA. Právní aspekty sdílení dat v rámci informačních technologií konceptu Smart City v dopravě a jejich dopady do práva veřejných zakázek (xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx). 1st ed. Brno: Masarykova univerzita, Právnická fakulta, 2020, 91 pp. Edice Scientia, sv. 702. ISBN 978-80-210-9777-3.
      More: https://is.muni.cz/publication/1743996/en
    14. Seminář Open Science
      MAREK, Jiří. Seminář Open Science. 2020.
      More: https://is.muni.cz/publication/1620144/en

    2019

    1. A deterministic approach for rapid identification of the critical links in networks
      VODÁK, Rostislav, Michal BÍL, Tomáš SVOBODA, Zuzana KŘIVÁNKOVÁ, Jan KUBEČEK, Tomáš REBOK and Petr HLINĚNÝ. A deterministic approach for rapid identification of the critical links in networks. PLOS ONE. United States: Public Library of Science, 2019, vol. 14, No 7, p. 1-18. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0219658.
      More: https://is.muni.cz/publication/1546976/en
    2. A GPU acceleration of 3-D Fourier reconstruction in cryo-EM
      STŘELÁK, David, Carlos Óscar S. SORZANO, José María CARAZO and Jiří FILIPOVIČ. A GPU acceleration of 3-D Fourier reconstruction in cryo-EM. The International Journal of High Performance Computing Applications. SAGE Publishing, 2019, vol. 33, No 5, p. 948-959. ISSN 1094-3420. Available from: https://dx.doi.org/10.1177/1094342019832958.
      More: https://is.muni.cz/publication/1505476/en
    3. Big Data - overview, basic concepts and practical use in research
      REBOK, Tomáš. Big Data - overview, basic concepts and practical use in research. In Alliance4Life 5th project meeting. 2019.
      More: https://is.muni.cz/publication/1565699/en
    4. BM-index: Balanced Metric Space Index based on Weighted Voronoi Partitioning
      ANTOL, Matej and Vlastislav DOHNAL. BM-index: Balanced Metric Space Index based on Weighted Voronoi Partitioning. In Lecture Notes in Computer Science. Advances in Databases and Information Systems, 23th East European Conference, ADBIS 2019. LNCS 11695. Cham: Springer International Publishing, 2019, p. 337-353. ISBN 978-3-030-28729-0. Available from: https://dx.doi.org/10.1007/978-3-030-28730-6_21.
      More: https://is.muni.cz/publication/1534362/en
    5. Caver web: identification of tunnels and channels in proteins and analysis of ligand transport
      ŠTOURAČ, Jan, O. VAVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, Gabriela Filipa FONSECA PINTO, Andrea SCHENKMAYEROVÁ, Jiří DAMBORSKÝ and David BEDNÁŘ. Caver web: identification of tunnels and channels in proteins and analysis of ligand transport. In European Biotechnology Congress. 2019. ISSN 0168-1656. Available from: https://dx.doi.org/10.1016/j.jbiotec.2019.05.251.
      More: https://is.muni.cz/publication/1647656/en
    6. Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport
      ŠTOURAČ, Jan, Ondřej VÁVRA, Piia Pauliina KOKKONEN, Jiří FILIPOVIČ, José Gaspar RANGEL PAMPLONA PIZARRO PINTO, Jan BREZOVSKÝ, Jiří DAMBORSKÝ and David BEDNÁŘ. Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic acids research. Oxford: Oxford University Press, 2019, vol. 47, W1, p. 414-422. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkz378.
      More: https://is.muni.cz/publication/1544938/en
    7. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels
      VÁVRA, Ondřej, Jiří FILIPOVIČ, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Jan ŠTOURAČ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinformatics. Oxford: Oxford University Press, 2019, vol. 35, No 23, p. 4986-4993. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btz386.
      More: https://is.muni.cz/publication/1544936/en
    8. Exploiting historical data: pruning autotuning spaces and estimating the number of tuning steps
      OĽHA, Jaroslav, Jana HOZZOVÁ, Jan FOUSEK and Jiří FILIPOVIČ. Exploiting historical data: pruning autotuning spaces and estimating the number of tuning steps. In Ulrich Schwardmann, Christian Boehme, Dora B. Heras, Valeria Cardellini, Emmanuel Jeannot, Antonio Salis, Claudio Schifanella, Ravi Reddy Manumachu, Dieter Schwamborn, Laura Ricci, Oh Sangyoon, Thomas Gruber, Laura Antonelli, Stephen L. Scott. Lecture Notes in Computer Science. Cham, Switzerland: Springer, Cham, 2019, p. 295-307. ISBN 978-3-030-48339-5. Available from: https://dx.doi.org/10.1007/978-3-030-48340-1_23.
      More: https://is.muni.cz/publication/1551680/en
    9. Fast Screening of Inhibitor Binding/Unbinding using Novel Software Tool CaverDock
      RANGEL PAMPLONA PIZARRO PINTO, José Gaspar, Ondřej VÁVRA, Jiří FILIPOVIČ, Jan ŠTOURAČ, David BEDNÁŘ and Jiří DAMBORSKÝ. Fast Screening of Inhibitor Binding/Unbinding using Novel Software Tool CaverDock. FRONTIERS IN CHEMISTRY. LAUSANNE: FRONTIERS MEDIA SA, 2019, vol. 7, OCT 29 2019, p. 1-14. ISSN 2296-2646. Available from: https://dx.doi.org/10.3389/fchem.2019.00709.
      More: https://is.muni.cz/publication/1596878/en
    10. Leveraging European infrastructures to access 1 million human genomes by 2022
      SAUNDERS, Gary, Michael BAUDIS, Regina BECKER, Sergi BELTRAN, Christophe BÉROUD, Ewan BIRNEY, Cath BROOKSBANK, Søren BRUNAK, Marc Van den BULCKE, Rachel DRYSDALE, Salvador CAPELLA-GUTIERREZ, Paul FLICEK, Francesco FLORINDI, Peter GOODHAND, Ivo GUT, Jaap HERINGA, Petr HOLUB, Jef HOOYBERGHS, Nick JUTY, Thomas M KEANE, Jan O KORBEL, Ilkka LAPPALAINEN, Brane LESKOSEK, Gert MATTHIJS, Michaela Th MAYRHOFER, Andres METSPALU, Arcadi NAVARRO, Steven NEWHOUSE, Tommi NYRÖNEN, Angela PAGE, Bengt PERSSON, Aarno PALOTIE, Helen PARKINSON, Jordi RAMBLA, David SALGADO, Erik STEINFELDER, Morris A SWERTZ, Alfonso VALENCIA, Susheel VARMA, Niklas BLOMBERG and Serena SCOLLEN. Leveraging European infrastructures to access 1 million human genomes by 2022. Nature Reviews Genetics. 2019, vol. 20, No 11, p. 692-701, 9 pp. ISSN 1471-0056. Available from: https://dx.doi.org/10.1038/s41576-019-0156-9.
      More: https://is.muni.cz/publication/1550920/en
    11. Metodika bitové ochrany digitálních dat (The methodology for bit-level preservation of digital dat)
      RŮŽIČKA, Michal, Andrea MIRANDA, Lukáš HEJTMÁNEK, Zdeněk VAŠEK, Vlastimil KREJČÍŘ and Miroslav BARTOŠEK. Metodika bitové ochrany digitálních dat (The methodology for bit-level preservation of digital dat). 2019.
      More: https://is.muni.cz/publication/1507697/en
    12. Nástroje pro ověřování bezpečnosti SW/HW a simulaci útoků na prvky kritické informační infrastruktury (Tools for verification of SW/HW security and simulation of attacks on critical information infrastructure) (software)
      ČELEDA, Pavel, Jakub ČEGAN, Martin DRAŠAR, Ivo NUTÁR, Jiří RÁJA, Tomáš REBOK, Andrej TOMČI and Daniel TOVARŇÁK. Nástroje pro ověřování bezpečnosti SW/HW a simulaci útoků na prvky kritické informační infrastruktury (Tools for verification of SW/HW security and simulation of attacks on critical information infrastructure). 2019.
      More: https://is.muni.cz/publication/1611336/en
    13. Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC
      MATE, Sebastian, Marvin KAMPF, Wolfgang RÖDLE, Stefan KRAUS, Rumyana PROYNOVA, Kaisa SILANDER, Lars EBERT, Martin LABLANS, Christina SCHÜTTLER, Christian KNELL, Niina EKLUND, Michael HUMMEL, Petr HOLUB and Hans-Ulrich PROKOSCH. Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC. Appl Clin Inform. 2019, vol. 10, No 04, p. 679-692. Available from: https://dx.doi.org/10.1055/s-0039-1695793.
      More: https://is.muni.cz/publication/1555796/en
    14. PhenoMeNal: processing and analysis of metabolomics data in the cloud
      PETERS, K, J BRADBURY, S BERGMANN, M CAPUCCINI, M CASCANTE, Atauri P DE, TMD EBBELS, C FOGUET, R GLEN, A GONZALEZ-BELTRAN, UL GUNTHER, E HANDAKAS, T HANKEMEIER, K HAUG, S HERMAN, Petr HOLUB, M IZZO, D JACOB, D JOHNSON, F JOURDAN, N KALE, I KARAMAN, B KHALILI, PE KHONSARI, K KULTIMA, S LAMPA, A LARSSON, C LUDWIG, P MORENO, S NEUMANN, JA NOVELLA, O Donovan C, JTM PEARCE, A PELUSO, ME PIRAS, L PIREDDU, MAC REED, P ROCCA-SERRA, P ROGER, A ROSATO, R RUEEDI, C RUTTKIES, N SADAWI, RM SALEK, SA SANSONE, V SELIVANOV, O SPJUTH, D SCHOBER, EA THEVENOT, M TOMASONI, M VAN RIJSWIJK, M VAN VLIET, MR VIANT, RJM WEBER, G ZANETTI and C STEINBECK. PhenoMeNal: processing and analysis of metabolomics data in the cloud. GIGASCIENCE. OXFORD: OXFORD UNIV PRESS, 2019, vol. 8, No 2, 12 pp. ISSN 2047-217X. Available from: https://dx.doi.org/10.1093/gigascience/giy149.
      More: https://is.muni.cz/publication/1534757/en
    15. Projekt ARCLib – vývoj open-source řešení pro dlouhodobou archivaci digitálních dokumentů pro knihovny a další paměťové instituce – aktuální stav (ARCLib – development of open source system for long-term preservation for library digital collections)
      LHOTÁK, Martin, Zdeněk VAŠEK and Michal RŮŽIČKA. Projekt ARCLib – vývoj open-source řešení pro dlouhodobou archivaci digitálních dokumentů pro knihovny a další paměťové instituce – aktuální stav (ARCLib – development of open source system for long-term preservation for library digital collections). In LTP 2019: Nové trendy a východiská pri budovaní LTP archívov: zborník príspevkov zo 4. medzinárodnej konferencie o dlhodobej archivácii. Bratislava: Univerzitná knižnica v Bratislave, 2019, p. 53-63. ISBN 978-80-89303-77-9.
      More: https://is.muni.cz/publication/1772108/en
    16. Software pro detekci a analýzu napadení KII (Software for detection and analysis of attacks on critical information infrastructures) (software)
      ČELEDA, Pavel, Jakub ČEGAN, Kamil ANDONIADIS, Michal BERAN, František HRDINA, Tomáš JIRSÍK, Daniel KOUŘIL, Michal MAZOUREK, Radek OŠLEJŠEK, Michal PROCHÁZKA, Daniel TOVARŇÁK, Petr VELAN, Martin VIZVÁRY, Vadim JANOVSKIJ and Kristína ZÁKOPČANOVÁ. Software pro detekci a analýzu napadení KII (Software for detection and analysis of attacks on critical information infrastructures). 2019.
      More: https://is.muni.cz/publication/1611317/en
    17. Software pro simulaci obecných i kritických informačních infrastruktur (Software for simulation of generic and critical information infrastructures) (software)
      ČELEDA, Pavel, Jakub ČEGAN, Kamil ANDONIADIS, Milan ČERMÁK, Jan DUDA, Vlastimil HOLER, Ľuboš HYŽÁK, Boris JADUŠ, Jakub KADAŠI, David LEŠKA, Martin MACHÁČ, Ivo NUTÁR, Radek OŠLEJŠEK, Dominik PILÁR, Tomáš PLESNÍK, Michal PROCHÁZKA, Tomáš REBOK, Vít RUSŇÁK, Miloslav STANĚK, Pavel ŠEDA, Valdemar ŠVÁBENSKÝ, Daniel TOVARŇÁK, Petr VELAN, Martin VIZVÁRY, Jan VYKOPAL and Tatiana ZBONČÁKOVÁ. Software pro simulaci obecných i kritických informačních infrastruktur (Software for simulation of generic and critical information infrastructures). 2019.
      More: https://is.muni.cz/publication/1611316/en

    2018

    1. Common ELIXIR Service for Researcher Authentication and Authorisation
      LINDEN, Mikael, Michal PROCHÁZKA, Ilkka LAPPALAINEN, Dominik František BUČÍK, Pavel VYSKOČIL, Martin KUBA, Sami SILÉN, Peter BELMANN, Alexander SCZYRBA, Steven NEWHOUSE, Luděk MATYSKA and Tommi NYRÖNEN. Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research. F1000 Research Ltd., 2018, vol. 7, No 2018, p. 1-16. ISSN 2046-1402. Available from: https://dx.doi.org/10.12688/f1000research.15161.1.
      More: https://is.muni.cz/publication/1463876/en
    2. Computation of Identification of a Gnostical Regression Model, Robust to Both Input and Output Disturbances with the Help of Parallel Computing–Basic Version
      KNÍŽEK, Jiří, Lubomír PAVLIŠKA, Václav PROCHÁZKA, Adéla VRTKOVÁ, Ladislav BERÁNEK, Pavel BOUCHAL, Bořivoj VOJTĚŠEK, Rudolf NENUTIL and Martin KUBA. Computation of Identification of a Gnostical Regression Model, Robust to Both Input and Output Disturbances with the Help of Parallel Computing–Basic Version. International Journal of Mathematics and Computation™. CESER, 2018, vol. 29, No 2, p. 29-58. ISSN 0974-5718.
      More: https://is.muni.cz/publication/1484863/en
    3. cuFFTAdvisor (software)
      STŘELÁK, David and Jiří FILIPOVIČ. cuFFTAdvisor. 2018.
      More: https://is.muni.cz/publication/1443522/en
    4. Dynamic Reconfiguration in Multigroup Multicast Routing under Uncertainty
      TROUBIL, Pavel, Hana RUDOVÁ and Petr HOLUB. Dynamic Reconfiguration in Multigroup Multicast Routing under Uncertainty. Journal of Heuristics. Springer, 2018, vol. 24, No 3, p. 395-423. ISSN 1381-1231. Available from: https://dx.doi.org/10.1007/s10732-017-9339-8.
      More: https://is.muni.cz/publication/1388266/en
    5. Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health
      HOLUB, Petr, Florian KOHLMAYER, Fabian PRASSER, Michaela Theresia MAYRHOFER, Irene SCHLUNDER, Gillian M. MARTIN, Sara CASATI, Lefteris KOUMAKIS, Andrea WUTTE, Lukas KOZERA, Dominik STRAPAGIEL, Gabriele ANTON, Gianluigi ZANETTI, Osman Ugur SEZERMAN, Maimuna MENDY, Dalibor VALÍK, Marialuisa LAVITRANO, Georges DAGHER, Kurt ZATLOUKAL, GertJan B. VAN OMMEN and Jan-Eric LITTON. Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2018, vol. 16, No 2, p. 97-105. ISSN 1947-5535. Available from: https://dx.doi.org/10.1089/bio.2017.0110.
      More: https://is.muni.cz/publication/1534756/en
    6. Kernel Tuning Toolkit (software)
      PETROVIČ, Filip, Jiří FILIPOVIČ, David STŘELÁK and Jana PAZÚRIKOVÁ. Kernel Tuning Toolkit. 2018.
      More: https://is.muni.cz/publication/1396357/en
    7. Metodika aplikace GDPR na výzkumná data v prostředí vysokých škol v ČR (Methodology of GDPR Application to Research Data in Czech Republic Universities)
      POLČÁK, Radim, Leoš ŠEVČÍK, Michal KOŠČÍK, Jakub KLODWIG and Petr HOLUB. Metodika aplikace GDPR na výzkumná data v prostředí vysokých škol v ČR (Methodology of GDPR Application to Research Data in Czech Republic Universities). 1. vydání. Brno: Neuveden, 2018, 156 pp. Available from: https://dx.doi.org/10.5281/zenodo.2532860.
      More: https://is.muni.cz/publication/1554297/en
    8. MIaS: Math-Aware Retrieval in Digital Mathematical Libraries
      SOJKA, Petr, Michal RŮŽIČKA and Vít NOVOTNÝ. MIaS: Math-Aware Retrieval in Digital Mathematical Libraries. Online. In Proceedings of the 27th ACM International Conference on Information and Knowledge Management (CIKM '18). Torino, Italy: Association for Computing Machinery, 2018, p. 1923-1926. ISBN 978-1-4503-6014-2. Available from: https://dx.doi.org/10.1145/3269206.3269233.
      More: https://is.muni.cz/publication/1430425/en
    9. Performance analysis and autotuning setup of the cuFFT library
      STŘELÁK, David and Jiří FILIPOVIČ. Performance analysis and autotuning setup of the cuFFT library. Online. In ACM International Conference Proceeding Series. Limassol, Cyprus: ACM, 2018, p. nestránkováno, 6 pp. ISBN 978-1-4503-6591-8. Available from: https://dx.doi.org/10.1145/3295816.3295817.
      More: https://is.muni.cz/publication/1505456/en
    10. Towards Artificial Priority Queues for Similarity Query Execution
      ANTOL, Matej and Vlastislav DOHNAL. Towards Artificial Priority Queues for Similarity Query Execution. Online. In 2018 IEEE 34th International Conference on Data Engineering Workshops (ICDEW). Paris, France: IEEE, 2018, p. 78-83. ISBN 978-1-5386-6306-6. Available from: https://dx.doi.org/10.1109/ICDEW.2018.00020.
      More: https://is.muni.cz/publication/1422496/en

    2017

    1. A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples
      PROYNOVA, Rumyana, Diogo ALEXANDRE, Martin LABLANS, David VAN ENCKEVORT, Sebastian MATE, Niina EKLUND, Kaisa SILANDER, Michael HUMMEL, Petr HOLUB and Frank ÜCKERT. A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples. Stud Health Technol Inform. Netherlands: IOS Press, 2017, vol. 243, p. 75-79, 6 pp. ISSN 0926-9630. Available from: https://dx.doi.org/10.3233/978-1-61499-808-2-75.
      More: https://is.muni.cz/publication/1401923/en
    2. Autotuning of OpenCL Kernels with Global Optimizations
      FILIPOVIČ, Jiří, Filip PETROVIČ and Siegfried BENKNER. Autotuning of OpenCL Kernels with Global Optimizations. Online. In 1st Workshop on Autotuning and Adaptivity Approaches for Energy Efficient HPC Systems (ANDARE'2017). Portland (USA): ACM, 2017, p. nestránkováno, 6 pp. ISBN 978-1-4503-5363-2. Available from: https://dx.doi.org/10.1145/3152821.3152877.
      More: https://is.muni.cz/publication/1396355/en
    3. BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration
      PANG, Chao, Fleur KELPIN, David VAN ENCKEVORT, Niina EKLUND, Kaisa SILANDER, Dennis HENDRIKSEN, Mark DE HAAN, Jonathan JETTEN, Tommy DE BOER, Bart CHARBON, Petr HOLUB, Hans HILLEGE and Morris A. SWERTZ. BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration. Bioinformatics. Oxford: Oxford University Press, 2017, vol. 33, No 22, p. 3627-3634. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btx478.
      More: https://is.muni.cz/publication/1401920/en
    4. CaverDock 1.0 (software)
      FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA and Jiří DAMBORSKÝ. CaverDock 1.0. 2017.
      More: https://is.muni.cz/publication/1396336/en
    5. Computation of Kovanic's Expectedness Distributions with the Help of Parallel Computing - Basic Version (with Special References of Health and Environment)
      KNÍŽEK, Jiří, Ladislav BERÁNEK, Pavel BOUCHAL, Bořivoj VOJTĚŠEK, Rudolf NENUTIL, Martin KUBA, Lubomír PAVLIŠKA and Václav PROCHÁZKA. Computation of Kovanic's Expectedness Distributions with the Help of Parallel Computing - Basic Version (with Special References of Health and Environment). INTERNATIONAL JOURNAL OF ECOLOGICAL ECONOMICS & STATISTICS. UTTARAKHAND: CENTRE ENVIRONMENT SOCIAL & ECONOMIC RESEARCH PUBL-CESER, 2017, vol. 38, No 1, p. 96-119. ISSN 0973-1385.
      More: https://is.muni.cz/publication/1414508/en
    6. Conception and Implementation of an Austrian Biobank Directory Integration Framework
      HOFER-PICOUT, Philipp, Horst PICHLER, Johann EDER, Sabrina B. NEURURER, Heimo MÜLLER, Robert REIHS, Petr HOLUB, Thomas INSAM and Georg GOEBEL. Conception and Implementation of an Austrian Biobank Directory Integration Framework. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2017, vol. 15, No 4, p. 332-340. ISSN 1947-5535. Available from: https://dx.doi.org/10.1089/bio.2016.0113.
      More: https://is.muni.cz/publication/1401926/en
    7. Flexible Similarity Search of Semantic Vectors Using Fulltext Search Engines
      RŮŽIČKA, Michal, Vít NOVOTNÝ, Petr SOJKA, Jan POMIKÁLEK and Radim ŘEHŮŘEK. Flexible Similarity Search of Semantic Vectors Using Fulltext Search Engines. Online. In CEUR Workshop Proceedings, Vol. 1923. Vienna, Austria: Neuveden, 2017, p. 1-12. ISSN 1613-0073.
      More: https://is.muni.cz/publication/1392125/en
    8. Four simple recommendations to encourage best practices in research software
      JIMÉNEZ, Rafael C, Mateusz KUZAK, Monther ALHAMDOOSH, Michelle BARKER, Bérénice BATUT, Mikael BORG, Salvador CAPELLA-GUTIERREZ, Neil Chue HONG, Martin COOK, Manuel CORPAS, Madison FLANNERY, Leyla GARCIA, Josep Ll GELPÍ, Simon GLADMAN, Carole GOBLE, Montserrat González FERREIRO, Alejandra GONZALEZ-BELTRAN, Philippa C GRIFFIN, Björn GRÜNING, Jonas HAGBERG, Petr HOLUB, Rob HOOFT, Jon ISON, Daniel S KATZ, Brane LESKOŠEK, Federico López GÓMEZ, Luis J OLIVEIRA, David MELLOR, Rowland MOSBERGEN, Nicola MULDER, Yasset PEREZ-RIVEROL, Robert PERGL, Horst PICHLER, Bernard POPE, Ferran SANZ, Maria V SCHNEIDER, Victoria STODDEN, Radosław SUCHECKI, Radka SVOBODOVÁ VAŘEKOVÁ, Harry-Anton TALVIK, Ilian TODOROV, Andrew TRELOAR, Sonika TYAGI, Maarten van GOMPEL, Daniel VAUGHAN, Allegra VIA, Xiaochuan WANG, Nathan S WATSON-HAIGH and Crouch STEVE. Four simple recommendations to encourage best practices in research software. F1000Research. 2017, vol. 6, JUN, p. 876-888. ISSN 2046-1402. Available from: https://dx.doi.org/10.12688/f1000research.11407.1.
      More: https://is.muni.cz/publication/1401937/en
    9. Math Information Retrieval for Digital Libraries
      RŮŽIČKA, Michal. Math Information Retrieval for Digital Libraries. Brno: Masaryk University, Faculty of Informatics, 2017, 144 pp. Doctoral Thesis.
      More: https://is.muni.cz/publication/1401941/en
    10. Nařízení GDPR a jeho implementace na vysokých školách v ČR – jak na to (GDPR Regulation and its Implementation at Universities in the Czech Republic - how to do it)
      BARTOŠEK, Miroslav, Michal RŮŽIČKA and Václav STUPKA. Nařízení GDPR a jeho implementace na vysokých školách v ČR – jak na to (GDPR Regulation and its Implementation at Universities in the Czech Republic - how to do it). In EUNIS-CZ. Dopad zavedení novely VŠ zákona do IS vysokých škol. 1st ed. Plzeň: Západočeská univerzita v Plzni, 2017, p. 5-14. ISBN 978-80-261-0713-2.
      More: https://is.muni.cz/publication/1388243/en
    11. Popularity-Based Ranking for Fast Approximate kNN Search
      ANTOL, Matej and Vlastislav DOHNAL. Popularity-Based Ranking for Fast Approximate kNN Search. Informatica. Lithuanian Academy of Sciences, 2017, vol. 28, No 1, p. 1-21. ISSN 0868-4952. Available from: https://dx.doi.org/10.15388/Informatica.2017.118.
      More: https://is.muni.cz/publication/1377613/en
    12. Semantic Vector Encoding and Similarity Search Using Fulltext Search Engines
      RYGL, Jan, Jan POMIKÁLEK, Radim ŘEHŮŘEK, Michal RŮŽIČKA, Vít NOVOTNÝ and Petr SOJKA. Semantic Vector Encoding and Similarity Search Using Fulltext Search Engines. Online. In Proceedings of the 2nd Workshop on Representation Learning for NLP, RepL4NLP 2017 c/o ACL 2017. Vancouver, Canada: Association for Computational Linguistics, ACL, 2017, p. 81-90. ISBN 978-1-945626-62-3. Available from: https://dx.doi.org/10.18653/v1/W17-2611.
      More: https://is.muni.cz/publication/1386510/en

    2016

    1. Accelerated RMSD Calculation for Molecular Metadynamics
      FILIPOVIČ, Jiří, Jana PAZÚRIKOVÁ, Aleš KŘENEK and Vojtěch SPIWOK. Accelerated RMSD Calculation for Molecular Metadynamics. In José Évora-Gómez and José Juan Hernandéz-Cabrera. Proceedings of the 2016 European Simulation and Modelling Conference. Ghent, Belgie: EUROSIS - ETI, 2016, p. 278-280. ISBN 978-90-77381-95-3.
      More: https://is.muni.cz/publication/1360278/en
    2. BBMRI-ERIC Directory: 515 Biobanks with Over 60 Million Biological Samples
      HOLUB, Petr, Morris A. SWERTZ, Robert REIHS, David VAN ENCKEVORT, Heimo MÜLLER and Jan-Eric LITTON. BBMRI-ERIC Directory: 515 Biobanks with Over 60 Million Biological Samples. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2016, vol. 14, No 6, p. 559-562. ISSN 1947-5535. Available from: https://dx.doi.org/10.1089/bio.2016.0088.
      More: https://is.muni.cz/publication/1401933/en
    3. BBMRI-ERIC: the novel gateway to biobanks
      MAYRHOFER, Michaela Th., Petr HOLUB, Andrea WUTTE and Jan-Eric LITTON. BBMRI-ERIC: the novel gateway to biobanks. Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz. 2016, vol. 2016, p. 1-6. ISSN 1437-1588. Available from: https://dx.doi.org/10.1007/s00103-015-2301-8.
      More: https://is.muni.cz/publication/1335195/en
    4. High-performance forward error correction: Enabling multi-gigabit flows and beyond on commodity GPU and CPU hardware in presence of packet loss
      KABÁT, Milan, Vojtěch DAVID, Petr HOLUB and Martin PULEC. High-performance forward error correction: Enabling multi-gigabit flows and beyond on commodity GPU and CPU hardware in presence of packet loss. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2016, vol. 54, No 1, p. 326 - 335. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2015.04.007.
      More: https://is.muni.cz/publication/1324427/en
    5. Math Indexer and Searcher under the Hood: Fine-Tuning Query Expansion and Unification Strategies
      RŮŽIČKA, Michal, Petr SOJKA and Martin LÍŠKA. Math Indexer and Searcher under the Hood: Fine-Tuning Query Expansion and Unification Strategies. Online. In Noriko Kando and Kazuaki Kishida and Makoto P. Kato and Shuhei Yamamoto. Proceedings of the 12th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2016, p. 331-337. ISBN 978-4-86049-071-3.
      More: https://is.muni.cz/publication/1346605/en
    6. Math-Aware Search Interfaces for Digital Mathematical Libraries (DML)
      SOJKA, Petr and Michal RŮŽIČKA. Math-Aware Search Interfaces for Digital Mathematical Libraries (DML). 2016.
      More: https://is.muni.cz/publication/1334168/en
    7. Numerical and experimental investigation of three-dimensional cavitating flow around the straight NACA2412 hydrofoil
      SEDLÁŘ, Milan, Bin JI, Tomáš KRÁTKÝ, Tomáš REBOK and Rostislav HUZLÍK. Numerical and experimental investigation of three-dimensional cavitating flow around the straight NACA2412 hydrofoil. Ocean Engineering. Elsevier Ltd., 2016, vol. 123, No 123, p. 357-382. ISSN 0029-8018. Available from: https://dx.doi.org/10.1016/j.oceaneng.2016.07.030.
      More: https://is.muni.cz/publication/1350801/en
    8. Optimizing Query Performance with Inverted Cache in Metric Spaces
      ANTOL, Matej and Vlastislav DOHNAL. Optimizing Query Performance with Inverted Cache in Metric Spaces. In Lecture Notes in Computer Science. Advances in Databases and Information Systems, 20th East European Conference, ADBIS 2016. Cham: Springer, 2016, p. 60-73. ISBN 978-3-319-44038-5. Available from: https://dx.doi.org/10.1007/978-3-319-44039-2_5.
      More: https://is.muni.cz/publication/1346419/en
    9. Projekt ArcLib – budování systému pro dlouhodobou archivaci digitálních dat v českých knihovnách (ArcLib Project: Designing Solution for Long-term Preservation in Czech Libraries)
      MELICHAR, Marek, Jan HUTAŘ, Michal RŮŽIČKA, Zdeněk HRUŠKA, Zdeněk VAŠEK, Miroslav BARTOŠEK and Martin LHOTÁK. Projekt ArcLib – budování systému pro dlouhodobou archivaci digitálních dat v českých knihovnách (ArcLib Project: Designing Solution for Long-term Preservation in Czech Libraries). IT lib. Bratislava: Centrum vedecko-technických informácií SR, 2016, vol. 20, No 2, p. 13-17. ISSN 1335-793X.
      More: https://is.muni.cz/publication/1350093/en
    10. ScaleText: The Design of a Scalable, Adaptable and User-Friendly Document System for Similarity Searches : Digging for Nuggets of Wisdom in Text
      RYGL, Jan, Petr SOJKA, Michal RŮŽIČKA and Radim ŘEHŮŘEK. ScaleText: The Design of a Scalable, Adaptable and User-Friendly Document System for Similarity Searches : Digging for Nuggets of Wisdom in Text. In Aleš Horák, Pavel Rychlý, Adam Rambousek. Proceedings of the Tenth Workshop on Recent Advances in Slavonic Natural Language Processing, RASLAN 2016. Brno: Tribun EU, 2016, p. 79-87. ISBN 978-80-263-1095-2.
      More: https://is.muni.cz/publication/1361540/en
    11. Tests of Hypotheses in a Set of LC-MS Profiles
      KNÍŽEK, Jiří, Pavel BOUCHAL, Vendula PÁRALOVÁ, Bořivoj VOJTĚŠEK, Rudolf NENUTIL, Ladislav BERÁNEK and Martin KUBA. Tests of Hypotheses in a Set of LC-MS Profiles. International Journal of Engineering and Future Technology. 2016, vol. 2, No 1, p. 45-54. ISSN 2455-6432.
      More: https://is.muni.cz/publication/1376341/en
    12. Tests of Hypotheses in a Set of Spectral Courses Alias Marker Statistics
      KNÍŽEK, Jiří, Jiří ŠINDELÁŘ, Pavel BOUCHAL, Bořivoj VOJTĚŠEK, Rudolf NENUTIL, Ladislav BERÁNEK and Martin KUBA. Tests of Hypotheses in a Set of Spectral Courses Alias Marker Statistics. Int J Stat Econ. 2016, vol. 17, No 1, p. 50-72. ISSN 0975-556X.
      More: https://is.muni.cz/publication/1376338/en
    13. Toward Natural Multi-User Interaction in Advanced Collaborative Display Environments
      RUSŇÁK, Vít, Lukáš RUČKA and Petr HOLUB. Toward Natural Multi-User Interaction in Advanced Collaborative Display Environments. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2016, vol. 54, January 2016, p. 313-325. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2015.03.019.
      More: https://is.muni.cz/publication/1206166/en
    14. Towards Global Biobank Integration by Implementation of the Minimum Information About Biobank data Sharing (MIABIS 2.0 Core)
      MERINO-MARTINEZ, Roxana, Loreana NORLIN, David VAN ENCKEVORT, Gabriele ANTON, Simone SCHUFFENHAUER, Kaisa SILANDER, Linda MOOK, Petr HOLUB, Raffael BILD, Morris SWERTZ and Jan-Eric LITTON. Towards Global Biobank Integration by Implementation of the Minimum Information About Biobank data Sharing (MIABIS 2.0 Core). Biopreservation and Biobanking. 2016. ISSN 1947-5535. Available from: https://dx.doi.org/10.1089/bio.2015.0070.
      More: https://is.muni.cz/publication/1335198/en
    15. Uchování digitálního dědictví a systém Archivematica (Preservation of Digital Heritage and System Archivematica)
      BARTOŠEK, Miroslav. Uchování digitálního dědictví a systém Archivematica (Preservation of Digital Heritage and System Archivematica). ITlib. Infotmačné technológie a knižnice. Bratislava: Centrum vedecko-technických informácií SR, 2016, vol. 2016, No 2, p. 32-35. ISSN 1335-793X.
      More: https://is.muni.cz/publication/1350092/en
    16. Univerzitní systém pro správu osobních digitálních certifikátů
      JAKUBIČKA, Martin and Michal PROCHÁZKA. Univerzitní systém pro správu osobních digitálních certifikátů. Plzeň, Česká republika: Západočeská univerzita v Plzni, 2016, p. 10-18, 8 pp. ISBN 978-80-261-0625-8.
      More: https://is.muni.cz/publication/1346416/en
    17. Vývoj postoje k vědeckým informacím a modelu otevřeného přístupu (Evolution of the attitude to scholarly information and open access model)
      BARTOŠEK, Miroslav. Vývoj postoje k vědeckým informacím a modelu otevřeného přístupu (Evolution of the attitude to scholarly information and open access model). In Petra Dědičová, Pavla Rygelová, Jiří Marek, Jan Skůpa. Otevřený přístup k vědeckým informacím : současný stav v České republice a ve světě. První vydání. Brno: Nakladatelství VUTIUM, 2016, p. 14-22. ISBN 978-80-214-5282-4.
      More: https://is.muni.cz/publication/1347127/en

    2015

    1. Acceleration of dRMSD Calculation and Efficient Usage of GPU Caches
      FILIPOVIČ, Jiří, Jan PLHÁK and David STŘELÁK. Acceleration of dRMSD Calculation and Efficient Usage of GPU Caches. In Waleed Smari. Proceedings of IEEE International Conference on High Performance Computing & Simulation. neuveden: IEEE, 2015, p. 47-54. ISBN 978-1-4673-7812-3. Available from: https://dx.doi.org/10.1109/HPCSim.2015.7237020.
      More: https://is.muni.cz/publication/1306977/en
    2. Accurate Fitting SAXS Curves with NMR Structure Ensembles
      KŘENEK, Aleš, Karel KUBÍČEK, Richard ŠTEFL and Jiří FILIPOVIČ. Accurate Fitting SAXS Curves with NMR Structure Ensembles. Online. In Simon Lin, Vicky Huang. Proceedings of International Symposium on Grids and Clouds 2015. Pissa: Proceedings of Science, 2015, p. nestránkováno, 9 pp. ISSN 1824-8039.
      More: https://is.muni.cz/publication/1309251/en
    3. Archivematica - open source systém pro digitální archivaci (Archivematica - Open Source System for Digital Archiving)
      BARTOŠEK, Miroslav. Archivematica - open source systém pro digitální archivaci (Archivematica - Open Source System for Digital Archiving). Knihovna. Praha: Národní knihovna ČR, 2015, Ročník 26, No 2, p. 25-38. ISSN 1801-3252.
      More: https://is.muni.cz/publication/1319618/en
    4. Combining Text and Formula Queries in Math Information Retrieval: Evaluation of Query Results Merging Strategies
      LÍŠKA, Martin, Petr SOJKA and Michal RŮŽIČKA. Combining Text and Formula Queries in Math Information Retrieval: Evaluation of Query Results Merging Strategies. In Davood Rafiei, Katsumi Tanaka. NWSearch '15: Proceedings of the First International Workshop on Novel Web Search Interfaces and Systems. New York, NY, USA: ACM, 2015, p. 7-9. ISBN 978-1-4503-3789-2. Available from: https://dx.doi.org/10.1145/2810355.2810359.
      More: https://is.muni.cz/publication/1309755/en
    5. Distributed job scheduling in MetaCentrum
      TÓTH, Šimon and Miroslav RUDA. Distributed job scheduling in MetaCentrum. Journal of Physics: Conference Series. Institute of Physics, 2015, vol. 608, No 1, p. 012025-12029. ISSN 1742-6596. Available from: https://dx.doi.org/10.1088/1742-6596/608/1/012025.
      More: https://is.muni.cz/publication/1203506/en
    6. Dlouhodobé uchování digitálních informací, Archivematica a projekt LTP-pilot (Digital preservation, Archivematica, and the LTP-pilot project)
      BARTOŠEK, Miroslav. Dlouhodobé uchování digitálních informací, Archivematica a projekt LTP-pilot (Digital preservation, Archivematica, and the LTP-pilot project). Duha. Brno: Moravská zemská knihovna v Brně, 2015, roč. 29, č. 3, p. 36-37. ISSN 0862-1985.
      More: https://is.muni.cz/publication/1310575/en
    7. Iterative Optimization of a Multi-compartmental Air Quality Modelling System
      TOMÁŠ, Martin, Tomáš REBOK and Christos EFSTATHIOU. Iterative Optimization of a Multi-compartmental Air Quality Modelling System. In Jan Kofroň and Tomáš Vojnar. Tenth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS 2015). první. Brno: MEMICS 2015, 2015, p. 70-81. ISBN 978-80-214-5254-1.
      More: https://is.muni.cz/publication/1343029/en
    8. KYPO - Kybernetický polygon (KYPO - Cybernetic Proving Ground)
      ČEGAN, Jakub, Pavel ČELEDA, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Jan VYKOPAL, Martin VIZVÁRY, Radek OŠLEJŠEK, Zdenek EICHLER, Dalibor TOTH, Milan ČERMÁK, Jan SOUKAL, Tomáš REBOK, Václav RAČANSKÝ, Ivo NUTÁR and Dušan LAGO. KYPO - Kybernetický polygon (KYPO - Cybernetic Proving Ground). 2015.
      More: https://is.muni.cz/publication/1316780/en
    9. Multicast Routing for High-Quality Multimedia Environments: Deployment and New Problems
      TROUBIL, Pavel, Hana RUDOVÁ and Petr HOLUB. Multicast Routing for High-Quality Multimedia Environments: Deployment and New Problems. Online. In Ingo Schwab, Leo van Moergestel, Gil Gonçalves. INTELLI 2015, The Fourth International Conference on Intelligent Systems and Applications. USA: IARIA, 2015, p. 61-65. ISBN 978-1-61208-437-4.
      More: https://is.muni.cz/publication/1313931/en
    10. MUSE framework 2.0 (software)
      RUSŇÁK, Vít, Lukáš RUČKA, Pavel KAJABA, Desana DAXNEROVÁ, Matej MINÁRIK, Jiří KAREŠ, Michal BÁBEL and Petr HOLUB. MUSE framework 2.0. 2015.
      More: https://is.muni.cz/publication/1309349/en
    11. OpenCL Kernel Fusion for GPU, Xeon Phi and CPU
      FILIPOVIČ, Jiří and Siegfried BENKNER. OpenCL Kernel Fusion for GPU, Xeon Phi and CPU. In Proceedings of IEEE International Symposium on Computer Architecture and High Performance Computing. Florianópolis: IEEE, 2015, p. 98-105. ISSN 1550-6533. Available from: https://dx.doi.org/10.1109/SBAC-PAD.2015.29.
      More: https://is.muni.cz/publication/1306983/en
    12. Optimizing CUDA code by kernel fusion: application on BLAS
      FILIPOVIČ, Jiří, Matúš MADZIN, Jan FOUSEK and Luděk MATYSKA. Optimizing CUDA code by kernel fusion: application on BLAS. The Journal of Supercomputing. Springer US, 2015, vol. 71, No 10, p. 3934-3957. ISSN 0920-8542. Available from: https://dx.doi.org/10.1007/s11227-015-1483-z.
      More: https://is.muni.cz/publication/1306828/en
    13. První návrh cílové infrastruktury pro provoz systému IRIS (First draft of the target infrastructure for the IRIS system operation)
      PROCHÁZKA, Filip, Tomáš REBOK and Aleš FARDA. První návrh cílové infrastruktury pro provoz systému IRIS (First draft of the target infrastructure for the IRIS system operation). 2015.
      More: https://is.muni.cz/publication/1342130/en
    14. Ruby Benchmark Suite using Docker
      NGUYEN, Filip, Tomáš REBOK, Richard LUDVIGH and Václav TUNKA. Ruby Benchmark Suite using Docker. Online. In M. Ganzha, L. Maciaszek, M. Paprzycki. Annals of Computer Science and Information Systems, Volume 5. 2015th ed. Poland: IEEE, 2015, p. 947-952. ISBN 978-83-60810-66-8. Available from: https://dx.doi.org/10.15439/2015F99.
      More: https://is.muni.cz/publication/1319509/en
    15. Software pro konfiguraci a monitorování virtuálního prostředí KYPO (Software for configuration and monitoring of KYPO environment) (software)
      ČEGAN, Jakub, Pavel ČELEDA, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Jan VYKOPAL, Martin VIZVÁRY, Milan ČERMÁK, Jan SOUKAL, Tomáš REBOK, Ivo NUTÁR and Dušan LAGO. Software pro konfiguraci a monitorování virtuálního prostředí KYPO (Software for configuration and monitoring of KYPO environment). 2015.
      More: https://is.muni.cz/publication/1316782/en
    16. Software pro vizualizaci virtuálního prostředí KYPO (Software for visualization of KYPO environment) (software)
      OŠLEJŠEK, Radek, Zdenek EICHLER, Dalibor TOTH, Pavel ČELEDA, Jakub ČEGAN, Tomáš JIRSÍK, Tomáš PLESNÍK, Michal PROCHÁZKA, Petr VELAN, Martin VIZVÁRY and Jan VYKOPAL. Software pro vizualizaci virtuálního prostředí KYPO (Software for visualization of KYPO environment). 2015.
      More: https://is.muni.cz/publication/1316784/en
    17. Using PKI to Provide Credential Delegation in non Web-based Federations
      KOUŘIL, Daniel, Marcel POUL and Michal PROCHÁZKA. Using PKI to Provide Credential Delegation in non Web-based Federations. In Proceedings of the International Conference on Information Science and Applications, Lecture Notes in Electrical Engineering. Pattaya, Thailand: Springer Berlin Heidelberg, 2015, p. 525-532. ISBN 978-3-662-46577-6. Available from: https://dx.doi.org/10.1007/978-3-662-46578-3_62.
      More: https://is.muni.cz/publication/1298383/en
    18. Videokonferenční prostředí pro komunikaci vzdálených skupin a způsob komunikace vzdálených skupin v systému videokonferenčního prostředí (Videoconferencing Environment for Remote Group Collaboration and Communication Mode of Remote Groups in a Videoconferencnig System Environment)
      SLOVÁK, Petr, Petr HOLUB and Pavel TROUBIL. Videokonferenční prostředí pro komunikaci vzdálených skupin a způsob komunikace vzdálených skupin v systému videokonferenčního prostředí (Videoconferencing Environment for Remote Group Collaboration and Communication Mode of Remote Groups in a Videoconferencnig System Environment). 2015.
      More: https://is.muni.cz/publication/1324437/en
    19. Závěrečná zpráva STORK e-Academia pilot (STORK e-Academia pilot final report)
      PROCHÁZKA, Michal. Závěrečná zpráva STORK e-Academia pilot (STORK e-Academia pilot final report). Brno: Masarykova univerzita, 2015, 29 pp.
      More: https://is.muni.cz/publication/1334101/en

    2014

    1. Cloud-based Testbed for Simulation of Cyber Attacks
      KOUŘIL, Daniel, Tomáš REBOK, Tomáš JIRSÍK, Jakub ČEGAN, Martin DRAŠAR, Martin VIZVÁRY and Jan VYKOPAL. Cloud-based Testbed for Simulation of Cyber Attacks. In Hanan Lutfiyya and Piotr Cholda. Proceedings of the Network Operations and Management Symposium (NOMS 2014). Krakow, Poland: IEEE Xplore Digital Library, 2014, p. 1-6. ISBN 978-1-4799-0913-1. Available from: https://dx.doi.org/10.1109/NOMS.2014.6838298.
      More: https://is.muni.cz/publication/1179611/en
    2. Computer applications systems and networks for medical education : MEFANET: Czech and Slovak Medical Faculties Network
      SCHWARZ, Daniel, Ladislav DUŠEK, Martin BAREŠ, Julie BIENERTOVÁ VAŠKŮ, Jitka FEBEROVÁ, Jiří KOFRÁNEK, Martin KOMENDA, Barbora LUDÍKOVÁ, Jiří MAYER, Jaroslav MAJERNÍK, Radim POLČÁK, Jarmila POTOMKOVÁ, Michal PROCHÁZKA, Adrian RAUDASCHL, Petr ŠTOURAČ, Jaroslav ŠTĚRBA, Stanislav ŠTÍPEK, Čestmír ŠTUKA, Ilja TACHECÍ and Martin VEJRAŽKA. Computer applications systems and networks for medical education : MEFANET: Czech and Slovak Medical Faculties Network. 1st ed. Brno: Masaryk University, Institute of Biostatistics and Analyses : Facta Medica, 2014, 230 pp. ISBN 978-80-904731-9-5. Available from: https://dx.doi.org/10.13140/2.1.1383.0723.
      More: https://is.muni.cz/publication/1211459/en
    3. Local Search Heuristics for Media Streams Planning with Transcoding
      MAREK, Jiří, Hana RUDOVÁ and Petr HOLUB. Local Search Heuristics for Media Streams Planning with Transcoding. Online. In IEEE 13th International Symposium on Network Computing and Applications NCA 2014. USA: IEEE, 2014, p. 167-170. ISBN 978-1-4799-5393-6. Available from: https://dx.doi.org/10.1109/NCA.2014.32.
      More: https://is.muni.cz/publication/1198861/en
    4. Math Indexer and Searcher under the Hood: History and Development of a Winning Strategy
      RŮŽIČKA, Michal, Petr SOJKA and Martin LÍŠKA. Math Indexer and Searcher under the Hood: History and Development of a Winning Strategy. In Noriko Kando, Hideo Joho, Kazuaki Kishida. Proceedings of the 11th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2014, p. 127-134. ISBN 978-4-86049-065-2.
      More: https://is.muni.cz/publication/1201956/en
    5. Math Indexer and Searcher Web Interface: Towards Fulfillment of Mathematicians' Information Needs
      LÍŠKA, Martin, Petr SOJKA and Michal RŮŽIČKA. Math Indexer and Searcher Web Interface: Towards Fulfillment of Mathematicians' Information Needs. In Stephen M. Watt, James H. Davenport, Alan P. Sexton, Petr Sojka, Josef Urban. Intelligent Computer Mathematics CICM 2014. Proceedings of Calculemus, DML, MKM, and Systems and Projects. LNAI 8543. Zurich: Springer International Publishing Switzerland, 2014, p. 444-448. ISBN 978-3-319-08433-6. Available from: https://dx.doi.org/10.1007/978-3-319-08434-3_36.
      More: https://is.muni.cz/publication/1181486/en
    6. MathCanEval 1.0 (software)
      SZALAI, Dominik, Robert ŠIŠKA, David FORMÁNEK, Jakub ADLER and Michal RŮŽIČKA. MathCanEval 1.0. 2014.
      More: https://is.muni.cz/publication/1210482/en
    7. MathML Canonicalizer 1.0.0 (software)
      FORMÁNEK, David, Robert ŠIŠKA, Dominik SZALAI, Jakub ADLER, Michal RŮŽIČKA, Martin LÍŠKA and Petr SOJKA. MathML Canonicalizer 1.0.0. 2014.
      More: https://is.muni.cz/publication/1159502/en
    8. Maths Information Retrieval for Digital Libraries
      RŮŽIČKA, Michal. Maths Information Retrieval for Digital Libraries. 2014. ISBN 978-3-319-08434-3.
      More: https://is.muni.cz/publication/1188431/en
    9. Media Streams Planning with Uncertain Link Capacities
      TROUBIL, Pavel, Hana RUDOVÁ and Petr HOLUB. Media Streams Planning with Uncertain Link Capacities. Online. In IEEE 13th International Symposium on Network Computing and Applications NCA 2014. USA: IEEE, 2014, p. 197-204. ISBN 978-1-4799-5393-6. Available from: https://dx.doi.org/10.1109/NCA.2014.37.
      More: https://is.muni.cz/publication/1195496/en
    10. MUSE framework 1.5 (software)
      RUSŇÁK, Vít, Lukáš RUČKA, Pavel KAJABA, Desana DAXNEROVÁ, Matej MINÁRIK, Jiří KAREŠ, Michal BÁBEL and Petr HOLUB. MUSE framework 1.5. 2014.
      More: https://is.muni.cz/publication/1216463/en
    11. Perun – Modern Approach for User and Service Management
      PROCHÁZKA, Michal, Slávek LICEHAMMER and Luděk MATYSKA. Perun – Modern Approach for User and Service Management. Mauritius: IIMC International Information Management Corporation Ltd, 2014, 11 pp. ISBN 978-1-905824-44-1.
      More: https://is.muni.cz/publication/1194834/en
    12. Regression Algorithm for Identification of Biomarker Areas in SELDI-TOF Mass Spectra
      KNÍŽEK, Jiří, Pavel BOUCHAL, Bořivoj VOJTĚŠEK, Rudolf NENUTIL, Ladislav BERÁNEK, Martin KUBA and Pavel TOMŠÍK. Regression Algorithm for Identification of Biomarker Areas in SELDI-TOF Mass Spectra. International Journal of Imaging and Robotics. 2014, vol. 13, No 2, p. 40-57. ISSN 2231-525X.
      More: https://is.muni.cz/publication/1160440/en
    13. SuperWASP data release 1 public again
      PAUNZEN, Ernst, Martin KUBA, Richard G. WEST and Miloslav ZEJDA. SuperWASP data release 1 public again. INFORMATION BULLETIN ON VARIABLE STARS. 2014, vol. 6090, No 6090, p. "nestrankovano", 2 pp. ISSN 1587-2440.
      More: https://is.muni.cz/publication/1161750/en
    14. Vulnerability analysis methods for road networks
      BÍL, Michal, Rostislav VODÁK, Jan KUBEČEK, Tomáš REBOK, Tomáš SVOBODA and Petr HLINĚNÝ. Vulnerability analysis methods for road networks. In European Geosciences Union General Assembly 2014 (EGU 2014). 2014.
      More: https://is.muni.cz/publication/1183914/en
    15. WebMIaS 1.5 (software)
      LÍŠKA, Martin, Petr SOJKA and Michal RŮŽIČKA. WebMIaS 1.5. 2014.
      More: https://is.muni.cz/publication/1173740/en

    2013

    1. Accessibility Issues in Digital Mathematical Libraries
      SOJKA, Petr, Michal RŮŽIČKA, Maroš KUCBEL and Martin JARMAR. Accessibility Issues in Digital Mathematical Libraries. In Proceedings of the Conference Universal Learning Design 2013. Brno: Masaryk University, 2013, p. 89-97. ISBN 978-80-210-6270-2.
      More: https://is.muni.cz/publication/1089724/en
    2. Automatic reconstruction of Norway spruce tree models from LiDAR data
      SLOUP, Petr and Tomáš REBOK. Automatic reconstruction of Norway spruce tree models from LiDAR data. In ISPRS2013-SSG. 2013.
      More: https://is.muni.cz/publication/1159075/en
    3. Automatic Tree Reconstruction from its Laser Scan [poster]
      SLOUP, Petr, Tomáš REBOK and Jan HANUŠ. Automatic Tree Reconstruction from its Laser Scan [poster]. In Global Change and Resilience. 2013.
      More: https://is.muni.cz/publication/1159074/en
    4. BBMRI_CZ Index Service (software)
      HOLUB, Petr, Ondřej VOJTÍŠEK, Dalibor VALÍK, Kristína GREPLOVÁ, Dana KNOFLÍČKOVÁ and Rudolf NENUTIL. BBMRI_CZ Index Service. 2013.
      More: https://is.muni.cz/publication/1163839/en
    5. CoUniverse 1.0 (software)
      TROUBIL, Pavel, Jiří MAREK, Petr HOLUB and Miloš LIŠKA. CoUniverse 1.0. 2013.
      More: https://is.muni.cz/publication/1163870/en
    6. Digitální knihovna fotografií (Digital Photography Library) (software)
      BARTOŠEK, Miroslav, Petr KOVÁŘ and Vlastimil KREJČÍŘ. Digitální knihovna fotografií (Digital Photography Library). 2013.
      More: https://is.muni.cz/publication/1168668/en
    7. DML-CZ DSpace (software)
      KREJČÍŘ, Vlastimil, Tomáš HOFMAN, Michal RŮŽIČKA and Miroslav BARTOŠEK. DML-CZ DSpace. 2013.
      More: https://is.muni.cz/publication/1168735/en
    8. DML-CZ: The Experience of a Medium-Sized Digital Mathematics Library
      BARTOŠEK, Miroslav and Jiří RÁKOSNÍK. DML-CZ: The Experience of a Medium-Sized Digital Mathematics Library. Notices of the AMS. Providence (USA): American Mathematical Society, 2013, vol. 60, No 8, p. 1028-1033. ISSN 0002-9920. Available from: https://dx.doi.org/10.1090/noti1031.
      More: https://is.muni.cz/publication/1122996/en
    9. FFdigi DSpace (software)
      KREJČÍŘ, Vlastimil, Dominik SZALAI, Miroslav BARTOŠEK and Lucie FABRIKOVÁ. FFdigi DSpace. 2013.
      More: https://is.muni.cz/publication/1169128/en
    10. Fully-automated Occlusion-insensitive Norway Spruce Tree Reconstructions from 3D Point Cloud Data [poster]
      SLOUP, Petr, Tomáš REBOK and Jan HANUŠ. Fully-automated Occlusion-insensitive Norway Spruce Tree Reconstructions from 3D Point Cloud Data [poster]. In ISPRS2013-SSG. 2013.
      More: https://is.muni.cz/publication/1159072/en
    11. GPU-accelerated DXT and JPEG compression schemes for low-latency network transmissions of HD, 2K, and 4K video
      HOLUB, Petr, Martin ŠROM, Martin PULEC, Jiří MATELA and Martin JIRMAN. GPU-accelerated DXT and JPEG compression schemes for low-latency network transmissions of HD, 2K, and 4K video. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2013, vol. 29, No 8, p. 1991-2006. ISSN 0167-739X. Available from: https://dx.doi.org/10.1016/j.future.2013.06.006.
      More: https://is.muni.cz/publication/1116913/en
    12. Local Search Heuristics for Media Streams Planning Problem
      MAREK, Jiří, Petr HOLUB and Hana RUDOVÁ. Local Search Heuristics for Media Streams Planning Problem. In Leonard Barolli, Fatos Xhafa, Makoto Takizawa, Tomoya Enokido, Hui-Huang Hsu. Proceedings of the 7th IEEE International Conference on Advanced Information Networking and Applications. Washington: IEEE Computer Society, 2013, p. 945-953. ISBN 978-0-7695-4953-8. Available from: https://dx.doi.org/10.1109/AINA.2013.132.
      More: https://is.muni.cz/publication/1076440/en
    13. Masaryk University DOI Tools (software)
      RŮŽIČKA, Michal. Masaryk University DOI Tools. 2013.
      More: https://is.muni.cz/publication/1168782/en
    14. Media Streams Planning with Transcoding
      TROUBIL, Pavel, Hana RUDOVÁ and Petr HOLUB. Media Streams Planning with Transcoding. Online. In 12th IEEE International Symposium on Network Computing and Applications (NCA 2013). USA: IEEE, 2013, p. 41-48. ISBN 978-0-7685-5043-6. Available from: https://dx.doi.org/10.1109/NCA.2013.46.
      More: https://is.muni.cz/publication/1112614/en
    15. Metadata Editor FFdigi (software)
      RŮŽIČKA, Michal, Petr KOVÁŘ and Vlastimil KREJČÍŘ. Metadata Editor FFdigi. 2013.
      More: https://is.muni.cz/publication/1168781/en
    16. MUSE framework 1.1.1 (software)
      RUSŇÁK, Vít, Lukáš RUČKA, Martin ĽUPTÁK and Petr HOLUB. MUSE framework 1.1.1. 2013.
      More: https://is.muni.cz/publication/1165244/en
    17. Perun - user and resources management system (software)
      SEBESTIÁNOVÁ, Zora, Michal PROCHÁZKA, Slávek LICEHAMMER, Michal ŠŤAVA and Pavel ZLÁMAL. Perun - user and resources management system. 2013.
      More: https://is.muni.cz/publication/1163580/en
    18. Portál elektronických informačních zdrojů (Electronic information resources portal) (software)
      BARTOŠEK, Miroslav and Vlastimil KREJČÍŘ. Portál elektronických informačních zdrojů (Electronic information resources portal). 2013.
      More: https://is.muni.cz/publication/1168674/en
    19. Real-time JPEG2000 for Digital Cinema and Large-Scale Image Archiving
      MATELA, Jiří, Martin JIRMAN and Petr HOLUB. Real-time JPEG2000 for Digital Cinema and Large-Scale Image Archiving. San Jose, CA, USA: NVIDIA Corporation, 2013. GPU Technology Conference.
      More: https://is.muni.cz/publication/1120659/en
    20. RemSig - Bezpečné úložiště digitálních certifikátů (RemSig - Secure digital certificate storage) (software)
      PROCHÁZKA, Michal and Daniel KOUŘIL. RemSig - Bezpečné úložiště digitálních certifikátů (RemSig - Secure digital certificate storage). 2013.
      More: https://is.muni.cz/publication/1163825/en
    21. Similarity Search for Mathematics: Masaryk University team at the NTCIR-10 Math Task
      LÍŠKA, Martin, Petr SOJKA and Michal RŮŽIČKA. Similarity Search for Mathematics: Masaryk University team at the NTCIR-10 Math Task. In Noriko Kando, Kazuaki Kishida. Proceedings of the 10th NTCIR Conference on Evaluation of Information Access Technologies. Tokyo: National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 Japan, 2013, p. 686-691. ISBN 978-4-86049-062-1.
      More: https://is.muni.cz/publication/1112631/en
    22. THALAMOSS Data Management Platform (software)
      SOCHOR, Jan, Petr HOLUB and Ondřej VOJTÍŠEK. THALAMOSS Data Management Platform. 2013.
      More: https://is.muni.cz/publication/1163850/en
    23. Three-dimensional Tree Reconstructions from Terrestrial LiDAR Scans
      REBOK, Tomáš, Petr SLOUP, Jan HANUŠ and Věroslav KAPLAN. Three-dimensional Tree Reconstructions from Terrestrial LiDAR Scans. In National Grid Infrastructure Yearbook 2011-12. 2013, p. 91-95. ISBN 978-80-904689-7-9.
      More: https://is.muni.cz/publication/1160326/en
    24. Toolset for Image and Text Processing and Metadata Enhancements — Final Release: Deliverable 7.4 of project EuDML
      WOJCIECHOWSKI, Krzys, Petr SOJKA, Nicolas HOUILLON, Michal RŮŽIČKA, Radim HATLAPATKA, Vlastimil KREJČÍŘ, Miroslav HRDINA, Jiří SOCHOR, Pavel RYCHLÝ, Aleš HORÁK, Alan SEXTON, Gilberto PEDROSA, Franck LONTIN, Thierry BOUCHE and Maciej KOŁUDA. Toolset for Image and Text Processing and Metadata Enhancements — Final Release: Deliverable 7.4 of project EuDML. 1 as of 9th February 2013. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2013, 24 pp. Deliverable D7.4.
      More: https://is.muni.cz/publication/1102834/en
    25. Towards Machine-Actionable Modules of a Digital Mathematics Library: The Example of DML-CZ
      RŮŽIČKA, Michal, Petr SOJKA and Vlastimil KREJČÍŘ. Towards Machine-Actionable Modules of a Digital Mathematics Library: The Example of DML-CZ. In J. Carette et al. CICM 2013, LNAI 7961. Berlin / Heidelberg: Springer, 2013, p. 263-277. ISBN 978-3-642-39319-8. Available from: https://dx.doi.org/10.1007/978-3-642-39320-4_17.
      More: https://is.muni.cz/publication/1109059/en
    26. Towards User-Aware Multi-Touch Interaction Layer for Group Collaborative Systems
      RUSŇÁK, Vít, Lukáš RUČKA and Petr HOLUB. Towards User-Aware Multi-Touch Interaction Layer for Group Collaborative Systems. In Kučera, A.; Henzinger, Th.A.; Nešetřil, J.; Vojnar, T.; Antoš, D. Lecture Notes in Computer Science Volume 7721. Revised Selected Papers. Berlin Heidelberg: Springer-Verlag Berlin / Heidelberg, 2013, p. 200-212. ISBN 978-3-642-36044-2. Available from: https://dx.doi.org/10.1007/978-3-642-36046-6_19.
      More: https://is.muni.cz/publication/1082807/en
    27. VLANManager (software)
      TÓTH, Gabriel and Petr HOLUB. VLANManager. 2013.
      More: https://is.muni.cz/publication/1163864/en
    28. 3.5 Million Smartmeters in the Cloud
      KŘENEK, Aleš, Petr HOLUB, Vlastimil HOLER, Daniel KOUŘIL, Filip PROCHÁZKA, Zdeněk HEJNA, Miroslav GURIČAN and František MULLER. 3.5 Million Smartmeters in the Cloud. Online. In Simon Lin. Proceedings ISGC 2013. Trieste: PoS - Proceedings of Science, 2013, p. 180-189. ISSN 1824-8039.
      More: https://is.muni.cz/publication/1131279/en

    2012

    1. CZ02: Remote Collaboration Over 8K Visualization Using UltraGrid and SAGE
      HOLUB, Petr, Martin PULEC, Jiří MATELA, Martin JIRMAN, Joe MAMBRETTI, Jim CHEN, Fei YEH and Luc RENAMBOT. CZ02: Remote Collaboration Over 8K Visualization Using UltraGrid and SAGE. Chicago, USA, 2012. GLIF Technical Working Group Meeting #18.
      More: https://is.muni.cz/publication/1081044/en
    2. Digitální knihovna Filozofické fakulty Masarykovy univerzity (Digital Library of the Faculty of Arts of Masaryk University)
      MÁCKOVÁ, Zdeňka and Miroslav BARTOŠEK. Digitální knihovna Filozofické fakulty Masarykovy univerzity (Digital Library of the Faculty of Arts of Masaryk University). Duha [online]. Brno: Moravská zemská knihovna, 2012, vol. 26, No 1. ISSN 1804-4255.
      More: https://is.muni.cz/publication/1173416/en
    3. E-learning na FF MU: Setkání a prezentace kurzů
      SUDICKÝ, Petr, Libor JUHAŇÁK and Daniel MIKŠÍK. E-learning na FF MU: Setkání a prezentace kurzů. 2012.
      More: https://is.muni.cz/publication/1493858/en
    4. Exploring collaboration in group-to-group videoconferencing
      SLOVÁK, Petr, Peter NOVÁK, Pavel TROUBIL, Vít RUSŇÁK, Petr HOLUB and Eric C. HOFER. Exploring collaboration in group-to-group videoconferencing. In Julie Dugdale, Cédric Masclet, Maria Antonietta Grasso, Jean François Boujut, Parina Hassanaly. From Research to Practice in the Design of Cooperative Systems: Results and Open Challenges; Proceedings of the 10th International Conference on the Design of Cooperative Systems. London: Springer, 2012, p. 229-244, 15 pp. ISBN 978-1-4471-4092-4. Available from: https://dx.doi.org/10.1007/978-1-4471-4093-1_16.
      More: https://is.muni.cz/publication/986494/en
    5. GColl2 (software)
      TROUBIL, Pavel and Petr HOLUB. GColl2. 2012.
      More: https://is.muni.cz/publication/1095638/en
    6. GPU-specific reformulations of image compression algorithms
      MATELA, Jiří, Petr HOLUB, Martin JIRMAN and Martin ŠROM. GPU-specific reformulations of image compression algorithms. Online. In Tescher, AG. Proceedings of Applications of Digital Image Processing XXXV. 8499th ed. BELLINGHAM, WA 98227-0010 USA: SPIE-INT SOC OPTICAL ENGINEERING, 2012, p. nestránkováno, 8 pp. ISBN 978-0-8194-9216-6. Available from: https://dx.doi.org/10.1117/12.929971.
      More: https://is.muni.cz/publication/989228/en
    7. Hypertext Atlases of Pathology
      FEIT, Josef, Lukáš HEJTMÁNEK, Michal PROCHÁZKA, Slávek LICEHAMMER and Luděk MATYSKA. Hypertext Atlases of Pathology. 2012. ISSN 0945-6317.
      More: https://is.muni.cz/publication/1080998/en
    8. Libkerat - TUIO 2.0 implementation, version 1.0 (software)
      RUČKA, Lukáš, Vít RUSŇÁK and Petr HOLUB. Libkerat - TUIO 2.0 implementation, version 1.0. 2012.
      More: https://is.muni.cz/publication/1078039/en
    9. Low GPU Occupancy Approach to Fast Arithmetic Coding in JPEG2000
      MATELA, Jiří, Martin ŠROM and Petr HOLUB. Low GPU Occupancy Approach to Fast Arithmetic Coding in JPEG2000. In Lecture Notes in Computer Science 7119. Heidelberg: Springer Berlin / Heidelberg, 2012, p. 136-145. ISBN 978-3-642-25928-9. Available from: https://dx.doi.org/10.1007/978-3-642-25929-6_13.
      More: https://is.muni.cz/publication/950789/en
    10. MathML Canonicalizer (software)
      LÍŠKA, Martin, David FORMÁNEK, Michal RŮŽIČKA and Petr SOJKA. MathML Canonicalizer. 2012.
      More: https://is.muni.cz/publication/1075497/en
    11. MUNI FITS Photometric Archive
      KUBA, Martin and Marek CHRASTINA. MUNI FITS Photometric Archive. In 44. konference o výzkumu proměnných hvězd. 2012.
      More: https://is.muni.cz/publication/1078097/en
    12. MUSE framework 1.0 (software)
      RUSŇÁK, Vít, Lukáš RUČKA and Petr HOLUB. MUSE framework 1.0. 2012.
      More: https://is.muni.cz/publication/1082815/en
    13. New Fairness and Performance Metrics for Current Grids
      KLUSÁČEK, Dalibor, Hana RUDOVÁ and Miroslav RUDA. New Fairness and Performance Metrics for Current Grids. In Cracow Grid Workshop 2012. 2012. ISBN 978-83-61433-06-4.
      More: https://is.muni.cz/publication/1075210/en
    14. Normalization of Digital Mathematics Library Content
      FORMÁNEK, David, Martin LÍŠKA, Michal RŮŽIČKA and Petr SOJKA. Normalization of Digital Mathematics Library Content. In Petr Sojka, Michael Kohlhase. DML 2012: Towards a Digital Mathematics Library. Brno: Masaryk University, 2012, p. 91-103. ISSN 1613-0073.
      More: https://is.muni.cz/publication/1075491/en
    15. Normalization of Digital Mathematics Library Content
      FORMÁNEK, David, Martin LÍŠKA, Michal RŮŽIČKA and Petr SOJKA. Normalization of Digital Mathematics Library Content. In CEUR Workshop Proceedings, Volume 921. Aachen: Neuveden, 2012, p. 91-103, 12 pp. ISSN 1613-0073.
      More: https://is.muni.cz/publication/986146/en
    16. Parallelized LDGM Coding for Demanding Multimedia Applications
      KABÁT, Milan and Petr HOLUB. Parallelized LDGM Coding for Demanding Multimedia Applications. In Antonin Kucera, Thomas A. Henzinger, Jaroslav Nesetril, Tomas Vojnar, David Antos. Memics 2012, Eighth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. First edition. Brno: Novpress s.r.o., 2012, p. 28-37. ISBN 978-80-87342-15-2.
      More: https://is.muni.cz/publication/1081553/en
    17. Planning, Predictability and Optimization within the TORQUE Scheduler
      CHLUMSKÝ, Václav, Dalibor KLUSÁČEK and Miroslav RUDA. Planning, Predictability and Optimization within the TORQUE Scheduler. In Antonín Kučera, Thomas Henzinger, Jaroslav Nešetřil, Tomáš Vojnar, David Antoš. MEMICS 2012. první. Brno: Novpress s.r.o., 2012, p. 96-97. ISBN 978-80-87342-15-2.
      More: https://is.muni.cz/publication/1075218/en
    18. Practical Experiences with Torque Meta-Scheduling in The Czech National Grid
      TÓTH, Šimon and Miroslav RUDA. Practical Experiences with Torque Meta-Scheduling in The Czech National Grid. Krakow, Poland: AGH University of Science and Technology Press, 2012, p. 33-45. ISSN 1508-2806.
      More: https://is.muni.cz/publication/992710/en
    19. The Biobanking Research Infrastructurec BBMRI_CZ: a Critical Tool to Enhance
      HOLUB, Petr, Kamila GREPLOVÁ, Dana KNOFLÍČKOVÁ and Dalibor VALÍK. The Biobanking Research Infrastructurec BBMRI_CZ: a Critical Tool to Enhance. Klinická onkologie. Praha: Česká lékařská společnost J.E.Purkyně, 2012, vol. 2012, No 2, p. 2S78- 2S81, 4 pp. ISSN 0862-495X.
      More: https://is.muni.cz/publication/1087133/en
    20. THE EXTENSION OF TORQUE SCHEDULER ALLOWING THE USE OF PLANNING AND OPTIMIZATION IN GRIDS
      KLUSÁČEK, Dalibor, Václav CHLUMSKÝ and Miroslav RUDA. THE EXTENSION OF TORQUE SCHEDULER ALLOWING THE USE OF PLANNING AND OPTIMIZATION IN GRIDS. Computer Science Journal. Krakow, Poland: AGH University of Science and Technology, 2012, vol. 13, No 2, p. 5-19. ISSN 1508-2806. Available from: https://dx.doi.org/10.7494/csci.2012.13.2.5.
      More: https://is.muni.cz/publication/1075197/en
    21. Toolset for Image and Text Processing and Metadata Enhancements — Value release: Deliverable 7.3 of project EuDML
      SOJKA, Petr, Krzysztof WOJCIECHOWSKI, Nicolas HOUILLON, Michal RŮŽIČKA and Radim HATLAPATKA. Toolset for Image and Text Processing and Metadata Enhancements — Value release: Deliverable 7.3 of project EuDML. 1.01 as of 8th March 2012. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2012, 32 pp. Deliverable D7.3.
      More: https://is.muni.cz/publication/1076135/en
    22. UltraGrid: Low-Latency High-Quality Video Transmissions on Commodity Hardware
      HOLUB, Petr, Jiří MATELA, Martin PULEC and Martin ŠROM. UltraGrid: Low-Latency High-Quality Video Transmissions on Commodity Hardware. In Proceedings of the 20th ACM international conference on Multimedia. New York, NY, USA: ACM, 2012, p. 1457-1460. ISBN 978-1-4503-1089-5. Available from: https://dx.doi.org/10.1145/2393347.2396519.
      More: https://is.muni.cz/publication/1081042/en
    23. UltraGrid 1.1 (software)
      HOLUB, Petr, Martin PULEC, Jiří MATELA, Martin ŠROM and Martin JIRMAN. UltraGrid 1.1. 2012.
      More: https://is.muni.cz/publication/1081043/en

    2011

    1. A Race for Security: Identifying Vulnerabilities on 50 000 Hosts Faster than Attackers
      PROCHÁZKA, Michal, Daniel KOUŘIL, Romain WARTEL, Christos KANELLOPOULOS and Christos TRIANTAFYLLIDIS. A Race for Security: Identifying Vulnerabilities on 50 000 Hosts Faster than Attackers. Taipei, Taiwan: Academia Sinica, 2011. ISGC 2011 & OGF 31.
      More: https://is.muni.cz/publication/949191/en
    2. Automated trust negotiation in identity federations using OWL-based abduction of missing credentials
      KUBA, Martin. Automated trust negotiation in identity federations using OWL-based abduction of missing credentials. Online. In Proceedings of the 6th International Conference forInternet Technology and Secured Transactions (ICITST-2011). Abu Dhabi: IEEE Xplore DigitalLibrary, 2011, p. 164-169. ISBN 978-1-908320-00-1.
      More: https://is.muni.cz/publication/966881/en
    3. Building Corpora of Technical Texts : Approaches and Tools
      SOJKA, Petr, Martin LÍŠKA and Michal RŮŽIČKA. Building Corpora of Technical Texts : Approaches and Tools. In Aleš Horák, Pavel Rychlý. Fifth Workshop on Recent Advances in Slavonic Natural Languages Processing, RASLAN 2011. první. Brno: Tribun EU, 2011, p. 71--82, 11 pp. ISBN 978-80-263-0077-9.
      More: https://is.muni.cz/publication/958877/en
    4. Česká digitální matematická knihovna a projekt EuDML (Czech digital mathematics library and the EuDML project)
      BARTOŠEK, Miroslav. Česká digitální matematická knihovna a projekt EuDML (Czech digital mathematics library and the EuDML project). In 6. Česko-slovenské soustředění matematické olympiády a Setkání českých a slovenských matematiků. 2011.
      More: https://is.muni.cz/publication/947641/en
    5. Data Transfer Planning with Tree Placement for Collaborative Environments
      HOLUB, Petr, Hana RUDOVÁ and Miloš LIŠKA. Data Transfer Planning with Tree Placement for Collaborative Environments. Constraints. Springer, 2011, vol. 16, No 3, p. 283-316. ISSN 1383-7133. Available from: https://dx.doi.org/10.1007/s10601-011-9106-7.
      More: https://is.muni.cz/publication/933074/en
    6. DML-CZ: česká digitální matematická knihovna v roce 2011 (DML-CZ: The Czech Digital Mathematics Library in 2011)
      BARTOŠEK, Miroslav. DML-CZ: česká digitální matematická knihovna v roce 2011 (DML-CZ: The Czech Digital Mathematics Library in 2011). ProInflow. Brno: Masarykova univerzita, 2011, vol. 3, listopad, p. 5-12. ISSN 1804-2406.
      More: https://is.muni.cz/publication/958090/en
    7. Easing Access to Grids Using Moonshot
      HARTMAN, Sam, Jens JENSEN, Daniel KOUŘIL and Michal PROCHÁZKA. Easing Access to Grids Using Moonshot. Praha: TERENA Networking Conference, 2011.
      More: https://is.muni.cz/publication/949197/en
    8. Efficient JPEG2000 EBCOT Context Modeling for Massively Parallel Architectures
      MATELA, Jiří, Vít RUSŇÁK and Petr HOLUB. Efficient JPEG2000 EBCOT Context Modeling for Massively Parallel Architectures. In Storer, James A. and Marcellin, Michael W. Data Compression Conference (DCC), 2011. Washington, DC, USA: IEEE Computer Society, 2011, p. 423-432. ISBN 978-0-7695-4352-9. Available from: https://dx.doi.org/10.1109/DCC.2011.49.
      More: https://is.muni.cz/publication/916772/en
    9. Exploring Trust in Group-to-Group Video-Conferencing
      SLOVÁK, Petr, Peter NOVÁK, Pavel TROUBIL, Petr HOLUB and Eric HOFER. Exploring Trust in Group-to-Group Video-Conferencing. Online. In CHI EA '11 Proceedings of the 2011 annual conference extended abstracts on Human factors in computing systems. New York, NY, USA: ACM New York, NY, USA, 2011, p. 1459-1464. ISBN 978-1-4503-0268-5. Available from: https://dx.doi.org/10.1145/1979742.1979791.
      More: https://is.muni.cz/publication/971436/en
    10. Federated Access to Grids
      KOUŘIL, Daniel, Sam HARTMAN, Josh HOWLETT, Jens JENSEN and Michal PROCHÁZKA. Federated Access to Grids. Vilnius: EGI User Forum, 2011.
      More: https://is.muni.cz/publication/949195/en
    11. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000
      MATELA, Jiří, Vít RUSŇÁK and Petr HOLUB. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science -- Selected Papers. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011, p. 77--84. ISBN 978-3-939897-22-4.
      More: https://is.muni.cz/publication/934115/en
    12. Jak sledovat zranitelnosti na 50 000 strojích
      PROCHÁZKA, Michal and Daniel KOUŘIL. Jak sledovat zranitelnosti na 50 000 strojích. Data Security Management. Praha: Tate International, 2011, 1/2011, p. 14-17. ISSN 1211-8737.
      More: https://is.muni.cz/publication/949193/en
    13. Kterak posluchárny spojovati a ještě záznam poříditi aneb audiovizuální technika na MU
      ANTOŠ, David, Petr HOLUB and Ivana KŘENKOVÁ. Kterak posluchárny spojovati a ještě záznam poříditi aneb audiovizuální technika na MU. ÚVT MU, 2011, 5 pp. Zpravodaj ÚVT MU, roč. XXI, č. 3. ISSN 1212-0901.
      More: https://is.muni.cz/publication/926261/en
    14. multiOUT (software)
      MATELA, Jiří, Martin PULEC and Petr HOLUB. multiOUT. 2011.
      More: https://is.muni.cz/publication/964190/en
    15. MUSE framework 0.1 (software)
      RUSŇÁK, Vít, Lukáš RUČKA and Petr HOLUB. MUSE framework 0.1. 2011.
      More: https://is.muni.cz/publication/967001/en
    16. MUSE: Multi-Sensor Framework
      RUSŇÁK, Vít, Lukáš RUČKA and Petr HOLUB. MUSE: Multi-Sensor Framework. 2011.
      More: https://is.muni.cz/publication/964499/en
    17. Otevřený přístup k vědeckým informacím na Masarykově univerzitě (Open Access to Scientific Information at Masaryk University)
      BARTOŠEK, Miroslav, Michal BRANDEJS and Ivana ČERNÁ. Otevřený přístup k vědeckým informacím na Masarykově univerzitě (Open Access to Scientific Information at Masaryk University). ITlib. Informačné technológie a knižnice. Bratislava: Centrum VTI SR, 2011, vol. 2011, No 2, p. 34-35. ISSN 1335-793X.
      More: https://is.muni.cz/publication/952550/en
    18. Peer-to-peer Cooperative Scheduling Architecture for National Grid Infrastructure
      MATYSKA, Luděk, Miroslav RUDA and Šimon TÓTH. Peer-to-peer Cooperative Scheduling Architecture for National Grid Infrastructure. In Simon C.Lin, Eric Yen. Data Driven e-Science. Academia Sinica Grid Computing Centre, 2011, p. 105-118. ISBN 978-1-4419-8014-4.
      More: https://is.muni.cz/publication/956018/en
    19. Použití Subversion pro verzování TeXových dokumentů (Version Control of TeX Documents Using Subversion)
      RŮŽIČKA, Michal. Použití Subversion pro verzování TeXových dokumentů (Version Control of TeX Documents Using Subversion). Zpravodaj CSTUG. Brno: CSTUG, 2011, vol. 2011, No 1, p. 21–64. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2011-1/21.
      More: https://is.muni.cz/publication/901229/en
    20. Redakční systém odborného časopisu s podporou exportu do digitální knihovny (A Scientific Journal Processing System with the Capability of Exporting to a Digital Library)
      RŮŽIČKA, Michal and Petr SOJKA. Redakční systém odborného časopisu s podporou exportu do digitální knihovny (A Scientific Journal Processing System with the Capability of Exporting to a Digital Library). Zpravodaj CSTUG. Brno: CSTUG, 2011, vol. 2011, No 1, p. 4–20. ISSN 1211-6661. Available from: https://dx.doi.org/10.5300/2011-1/4.
      More: https://is.muni.cz/publication/958958/en
    21. Reputation Based Trust Management System Supporting Collaboration in a Medical Application
      ŠPÁNEK, Roman, Daniel KOUŘIL, Martin KUBA and Michal PROCHÁZKA. Reputation Based Trust Management System Supporting Collaboration in a Medical Application. In Proceedings of e-Technologies and Networks for Development (ICeND 2011), Communications in Computer and Information Science, vol. 171. Heidelberg: Springer Berlin, 2011, p. 285-297. ISBN 978-3-642-22729-5.
      More: https://is.muni.cz/publication/956108/en
    22. Scientific Journal Processing System with the Capability of Exporting to a Digital Library using MathML (software)
      RŮŽIČKA, Michal and Petr SOJKA. Scientific Journal Processing System with the Capability of Exporting to a Digital Library using MathML. 2011.
      More: https://is.muni.cz/publication/927596/en
    23. Seminář multimédií (Multimedia workshop)
      RŮŽIČKA, Jan, Miroslav VOZŇÁK, Petr HOLUB, Jiří MATELA, Michal KRSEK, Jiří NAVRÁTIL, Lukáš MACURA, Miloš LIŠKA and Filip ŘEZÁČ. Seminář multimédií (Multimedia workshop). 2011.
      More: https://is.muni.cz/publication/964528/en
    24. Současné a budoucí možnosti e-learningu na FF MU
      SUDICKÝ, Petr and Daniel MIKŠÍK. Současné a budoucí možnosti e-learningu na FF MU. 2011.
      More: https://is.muni.cz/publication/1493857/en
    25. The Extension of TORQUE Scheduler Allowing the Use of Planning and Optimization Algorithms in Grids
      CHLUMSKÝ, Václav, Dalibor KLUSÁČEK and Miroslav RUDA. The Extension of TORQUE Scheduler Allowing the Use of Planning and Optimization Algorithms in Grids. In Cracow Grid Workshop. 2011.
      More: https://is.muni.cz/publication/962237/en
    26. Towards Peer-to-Peer Scheduling Architecture for the Czech National Grid
      TÓTH, Šimon, Miroslav RUDA and Luděk MATYSKA. Towards Peer-to-Peer Scheduling Architecture for the Czech National Grid. Krakow, Poland: Academic Computer Centre CYFRONET AGH, 2011, p. 92-101. ISBN 978-83-61433-03-3.
      More: https://is.muni.cz/publication/992717/en
    27. UltraGrid Streaming to SAGE
      PULEC, Martin, Jiří MATELA and Petr HOLUB. UltraGrid Streaming to SAGE. 2011.
      More: https://is.muni.cz/publication/964501/en
    28. UltraGrid 0.9 (software)
      PULEC, Martin, Martin ŠROM, Petr HOLUB and Jiří MATELA. UltraGrid 0.9. 2011.
      More: https://is.muni.cz/publication/964519/en
    29. UltraGrid 1.0 (software)
      PULEC, Martin, Petr HOLUB, Jiří MATELA, Martin ŠROM and Martin JIRMAN. UltraGrid 1.0. 2011.
      More: https://is.muni.cz/publication/964523/en
    30. Využití e-learningového portálu AKUTNE.CZ při studiu medicíny (Use of e-learning AKUTNE.CZ portal to study medicine)
      BALÁKOVÁ, Lenka, Petr ŠTOURAČ, Ivo KŘIKAVA, Pavel ŠEVČÍK, Daniel SCHWARZ, Ivo ŠNÁBL, Radim ŠUSTR and Petr HOLUB. Využití e-learningového portálu AKUTNE.CZ při studiu medicíny (Use of e-learning AKUTNE.CZ portal to study medicine). In Petr Sojka, Martin Kvizda. Sborník SCO 2011. 1st ed. Brno: MUNI Press, 2011, p. 165-169. ISBN 978-80-210-5528-5.
      More: https://is.muni.cz/publication/965032/en
    31. Web Interface and Collection for Mathematical Retrieval : WebMIaS and MREC
      LÍŠKA, Martin, Petr SOJKA, Michal RŮŽIČKA and Peter MRAVEC. Web Interface and Collection for Mathematical Retrieval : WebMIaS and MREC. In Petr Sojka, Thierry Bouche. DML 2011: Towards a Digital Mathematics Library. Brno: Masaryk University, 2011, p. 77-84. ISBN 978-80-210-5542-1.
      More: https://is.muni.cz/publication/946673/en

    2010

    1. Comparison of CP and IP Techniques for Data Transfer Planning
      HOLUB, Petr, Miloš LIŠKA, Hana RUDOVÁ and Pavel TROUBIL. Comparison of CP and IP Techniques for Data Transfer Planning. In Proceedings of the Eleventh AI*IA Symposium on Artificial Intelligence. 2010. ISBN 978-88-904924-1-9.
      More: https://is.muni.cz/publication/905530/en
    2. CoUniverse Orchestrated Collaborative Environments with Dynamic Circuit Networks
      LIŠKA, Miloš, Petr HOLUB, Andrew LAKE and John VOLLBRECHT. CoUniverse Orchestrated Collaborative Environments with Dynamic Circuit Networks. 2010 Ninth International Conference on Networks, 2010, p. 300-305. ISBN 978-0-7695-3979-9.
      More: https://is.muni.cz/publication/887350/en
    3. Design and Implementation of a Production Dynamically Configurable Testbed
      WELSHONS, Kenny, Patrick DORN, Andrei HUTANU, Petr HOLUB, John VOLLBRECHT and Gabrielle ALLEN. Design and Implementation of a Production Dynamically Configurable Testbed. In TG '10 Proceedings of the 2010 TeraGrid Conference. Pittsburgh, PA, USA: ACM New York, NY, USA, 2010, p. 1-8. ISBN 978-1-60558-818-6.
      More: https://is.muni.cz/publication/887352/en
    4. Eye-Control of Videoconferencing Environment Using Common Web-Cameras
      TROUBIL, Pavel and Petr HOLUB. Eye-Control of Videoconferencing Environment Using Common Web-Cameras. In Proceedings of the IADIS International Conferences Collaborative Technologies 2010 and Web Based Communities 2010. Freiburg: IADIS Press, 2010, p. 153-156. ISBN 978-972-8939-21-2.
      More: https://is.muni.cz/publication/899132/en
    5. GColl: enhancing trust in flexible group-to-group videoconferencing
      SLOVÁK, Petr, Pavel TROUBIL and Petr HOLUB. GColl: enhancing trust in flexible group-to-group videoconferencing. In Proceedings of the 28th of the international conference extended abstracts on Human factors in computing systems. New York, NY, USA: ACM, 2010, p. 3607-3612. ISBN 978-1-60558-930-5.
      More: https://is.muni.cz/publication/887351/en
    6. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000
      MATELA, Jiří, Vít RUSŇÁK and Petr HOLUB. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. In MEMICS 2010 Proceedings. first. Brno: NOVPRESS, 2010, p. 126-134. ISBN 978-80-87342-10-7.
      More: https://is.muni.cz/publication/904619/en
    7. H.323 for Medical Application and Virtual Laboratories
      HOLUB, Petr. H.323 for Medical Application and Virtual Laboratories. In 3rd E2EWorkshop on Provisioning E2E Services. 2010.
      More: https://is.muni.cz/publication/910549/en
    8. Intelligent logging server
      DRAŠAR, Martin, Martin JUŘEN, Daniel KOUŘIL, Pavel MINAŘÍK, Michal PROCHÁZKA and Jan VYKOPAL. Intelligent logging server. Warsaw: SECURE 2010, 2010.
      More: https://is.muni.cz/publication/949192/en
    9. MetaCentrum Yearbook 2009
      KŘENKOVÁ, Ivana, David ANTOŠ and Luděk MATYSKA. MetaCentrum Yearbook 2009. first. Prague: CESNET, z. s. p. o., 2010, 172 pp. ISBN 978-80-904173-7-3.
      More: https://is.muni.cz/publication/895228/en
    10. MetaCentrum—e-Infrastructure for Computational and Data Challenges
      KMUNÍČEK, Jan, Martin KUBA, Ivana KŘENKOVÁ and David ANTOŠ. MetaCentrum—e-Infrastructure for Computational and Data Challenges. Nové Hrady, 2010.
      More: https://is.muni.cz/publication/911380/en
    11. Metadata Editor EuDML
      BARTOŠEK, Miroslav, Petr KOVÁŘ and Michal RŮŽIČKA. Metadata Editor EuDML. 2010.
      More: https://is.muni.cz/publication/927548/en
    12. Network-Based Collaborative Environments
      HOLUB, Petr. Network-Based Collaborative Environments. In Informatics Colloquium FI MU. 2010.
      More: https://is.muni.cz/publication/887361/en
    13. Report on available collections and metadata: Deliverable 3.1 of project EuDML
      BOUCHE, Thierry, Hugo MANGUINHAS, Claude GOUTORBE, Nicolas HOUILLON, Rosa DE LA VIESCA, Helena FERNANDEZ, Jean-Paul JORDA, Marie-Louise CHAIX, Katarzyna ZAMLYNSKA, Wojtek SYLWESTRZAK, Michael JOST, Radoslav PAVLOV, Jiří RÁKOSNÍK, Miroslav BARTOŠEK, Petr SOJKA, Ioannis KARYDIS and Thomas FISCHER. Report on available collections and metadata: Deliverable 3.1 of project EuDML. 1.6 as of 5th August 2010. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2010, 40 pp. Deliverable D3.1.
      More: https://is.muni.cz/publication/1076362/en
    14. Something you may have wanted to know about L&B
      ŠUSTR, Zdeněk, Jiří SITERA, František DVOŘÁK, Jiří FILIPOVIČ, Daniel KOUŘIL, Aleš KŘENEK, Luděk MATYSKA, Miloš MULAČ, Jan POSPÍŠIL, Miroslav RUDA, Zdeněk SALVET and Michal VOCŮ. Something you may have wanted to know about L&B. Journal of Physics: Conference Series. 2010, vol. 219, No 6, 10 pp. ISSN 1742-6596.
      More: https://is.muni.cz/publication/887148/en
    15. Testy softwarových VoIP klientů (Evaluation of Software VoIP clients)
      HRBATÝ, Dušan, Jakub MAREČEK, Michal VÁVRA, Tomáš REBOK, Eva HLADKÁ, Jan DOLEČEK, Martin JANTOŠOVIČ, František KOBZÍK, Michal KOHUT, Vít RUSŇÁK, Martin SKALA, Daniel STIBOR and Jiří ŠKROBÁK. Testy softwarových VoIP klientů (Evaluation of Software VoIP clients). Brno: Laboratoř pokročilých síťových technologií FI MU, 2010.
      More: https://is.muni.cz/publication/880729/en
    16. The EuDML metadata schema: Deliverable D3.2 of project EuDML
      JOST, Michael, Thierry BOUCHE, Claude GOUTORBE, Jean-Paul JORDA, Miroslav BARTOŠEK, Peter STANCHEV and Michał POLITOWSKI. The EuDML metadata schema: Deliverable D3.2 of project EuDML. 1.6 as of 15th December 2010. EU CIP-ICT-PSP project 250503 EuDML: The European Digital Mathematics Library, 2010, 31 pp. Deliverable D3.2.
      More: https://is.muni.cz/publication/1076262/en
    17. Unassisted Lecture Recording at Masaryk University
      HOLUB, Petr. Unassisted Lecture Recording at Masaryk University. In 3rd TF-Media task force meeting. 2010.
      More: https://is.muni.cz/publication/910548/en
    18. User Centric Authentication for Web Applications
      PROCHÁZKA, Michal, Daniel KOUŘIL and Luděk MATYSKA. User Centric Authentication for Web Applications. In Proceedings of the 2010 International Symposium on Collaborative Technologies and Systems. Chicago, USA: IEEE, 2010, p. 67-74. ISBN 978-1-4244-6620-7.
      More: https://is.muni.cz/publication/885632/en
    19. Virtual Clusters as a New Service of MetaCentrum, the Czech NGI
      RUDA, Miroslav, Zdeněk ŠUSTR, Jiří SITERA, David ANTOŠ, Lukáš HEJTMÁNEK and Petr HOLUB. Virtual Clusters as a New Service of MetaCentrum, the Czech NGI. In Cracow Grid Workshop '09. Krakow: Academic Computer Centre CYFRONET AGH, 2010, p. 64-71. ISBN 978-83-61433-01-9.
      More: https://is.muni.cz/publication/878251/en
    20. Virtual Multicast
      HOLUB, Petr and Eva HLADKÁ. Virtual Multicast. In Trends in Telecommunications Technologies. 1st ed. Vukovar, Croatia: IN-TECH, 2010, p. 63-85. ISBN 978-953-307-072-8.
      More: https://is.muni.cz/publication/887353/en

    2009

    1. Atlases jako poskytovatel služby ve federacích (Atlases as a Service provider in the Identity Federations)
      PROCHÁZKA, Michal and Josef FEIT. Atlases jako poskytovatel služby ve federacích (Atlases as a Service provider in the Identity Federations). Brno: Masarykova univerzita, 2009. ISBN 978-80-7392-118-7.
      More: https://is.muni.cz/publication/857582/en
    2. Central European Regional EMC2 meeting
      PROCHÁZKA, Michal. Central European Regional EMC2 meeting. 2009.
      More: https://is.muni.cz/publication/842994/en
    3. CoUniverse: Framework for Building Self-Organizing Collaborative Environments Using Extreme-Bandwidth Media Applications
      LIŠKA, Miloš and Petr HOLUB. CoUniverse: Framework for Building Self-Organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. In The Eighth International Conference on Networks ICN 2009. Cancún, Mexico: IARIA, 2009, p. 259-265. ISBN 978-0-7695-3552-4.
      More: https://is.muni.cz/publication/800069/en
    4. Czech Digital Mathematics Library -- DML-CZ
      SOJKA, Petr, Jiří RÁKOSNÍK, Miroslav BARTOŠEK, Martin LHOTÁK and Jiří VESELÝ. Czech Digital Mathematics Library -- DML-CZ. 2009.
      More: https://is.muni.cz/publication/878622/en
    5. Česká digitální matematická knihovna - DML-CZ (Czech Digital Mathematics Library - DML-CZ)
      RÁKOSNÍK, Jiří, Martin LHOTÁK, Miroslav BARTOŠEK, Petr SOJKA and Oldřich ULRYCH. Česká digitální matematická knihovna - DML-CZ (Czech Digital Mathematics Library - DML-CZ). 2009.
      More: https://is.muni.cz/publication/868115/en
    6. DiProNN: Distributed Programmable Network Node
      REBOK, Tomáš. DiProNN: Distributed Programmable Network Node. Brno: Faculty of Informatics, Masaryk University, 2009, 200 pp. Ph.D. Thesis.
      More: https://is.muni.cz/publication/852435/en
    7. e-Infrastruktury - komplexní nástroje pro podporu vědy, výzkumu i výuky (e-Infrastructures--tools for science and education support)
      HOLUB, Petr and David ANTOŠ. e-Infrastruktury - komplexní nástroje pro podporu vědy, výzkumu i výuky (e-Infrastructures--tools for science and education support). Masarykova univerzita, 2009, 7 pp. Zpravodaj ÚVT MU, 19, 4, 1-6. ISSN 1212-0901.
      More: https://is.muni.cz/publication/828216/en
    8. Enhanced UDP Packet Reflector -- Erum
      PÚDELKA, Ivan and Tomáš REBOK. Enhanced UDP Packet Reflector -- Erum. 2009.
      More: https://is.muni.cz/publication/862402/en
    9. Experiences with Massive PKI Deployment and Usage
      KOUŘIL, Daniel and Michal PROCHÁZKA. Experiences with Massive PKI Deployment and Usage. In Security adn Protection of Information. 2009th ed. Brno, 2009, p. 44-52. ISBN 978807231641.
      More: https://is.muni.cz/publication/842976/en
    10. Fault-tolerant Access Control in Distributed Environment the MetaCentrum Authorization Infrastructure
      KOUŘIL, Daniel and Michal PROCHÁZKA. Fault-tolerant Access Control in Distributed Environment the MetaCentrum Authorization Infrastructure. CESNET, 2009. Technical report.
      More: https://is.muni.cz/publication/864603/en
    11. Framework for non-Web application integration - CAT
      PROCHÁZKA, Michal, Daniel KOUŘIL and Tomáš KUBINA. Framework for non-Web application integration - CAT. In TERENA EuroCAMP. 2009.
      More: https://is.muni.cz/publication/842999/en
    12. GColl : A Flexible Videoconferencing Environment for Group-to-Group Interaction
      SLOVÁK, Petr, Pavel TROUBIL and Petr HOLUB. GColl : A Flexible Videoconferencing Environment for Group-to-Group Interaction. In Human-Computer Interaction – INTERACT 2009, Lecture Notes in Computer Science Volume 5727. 2009th ed. Uppsala, Sweden: Springer Berlin / Heidelberg, 2009, p. 165-168. ISBN 978-3-642-03657-6. Available from: https://dx.doi.org/10.1007/978-3-642-03658-3_22.
      More: https://is.muni.cz/publication/847218/en
    13. GColl - group-to-group videoconferencing environment
      TROUBIL, Pavel, Petr SLOVÁK, Milan KABÁT and Petr HOLUB. GColl - group-to-group videoconferencing environment. 2009.
      More: https://is.muni.cz/publication/857713/en
    14. GColl: A Flexible Videoconferencing Environment for Group-to-Group Interaction
      SLOVÁK, Petr, Pavel TROUBIL and Petr HOLUB. GColl: A Flexible Videoconferencing Environment for Group-to-Group Interaction. In Annual Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. 2009. ISBN 978-80-87342-04-6.
      More: https://is.muni.cz/publication/857712/en
    15. GColl Group-to-group Videoconferencing System: Design and First Experiences
      SLOVÁK, Petr, Pavel TROUBIL and Petr HOLUB. GColl Group-to-group Videoconferencing System: Design and First Experiences. In The 5th International ICST Conference on Collaborative Computing: Networking, Applications and Worksharing. Neuveden: Neuveden, 2009, 9 pp. ISBN 978-963-9799-76-9.
      More: https://is.muni.cz/publication/847219/en
    16. Grid-enabled Desktop
      PROCHÁZKA, Michal, Daniel KOUŘIL and Tomáš KUBINA. Grid-enabled Desktop. In TAGPMA Federated Identity Workshop. 2009.
      More: https://is.muni.cz/publication/842997/en
    17. Interfacing CoUniverse & Internet2 DCN
      HOLUB, Petr, Miloš LIŠKA, Andrew LAKE, Chris TRACY, Tom LEHMAN, John VOLLBRECHT and Brian CASHMAN. Interfacing CoUniverse & Internet2 DCN. In Internet2 Spring Member Meeting 2009. 2009.
      More: https://is.muni.cz/publication/836801/en
    18. Interfacing CoUniverse & Internet2 DCN
      HOLUB, Petr, Miloš LIŠKA, Andrew LAKE and John VOLLBRECHT. Interfacing CoUniverse & Internet2 DCN. In Internet2 Joint Tech Meeting 2009. 2009.
      More: https://is.muni.cz/publication/836794/en
    19. Ischemicko-reperfuzní poškození ledvin: Zpráva z videokonferenčně přenášeného kurzu 4th Belgrade up-to-date in Nephrology
      SMRŽOVÁ, Jana, Miloš LIŠKA and Michal PROCHÁZKA. Ischemicko-reperfuzní poškození ledvin: Zpráva z videokonferenčně přenášeného kurzu 4th Belgrade up-to-date in Nephrology. Aktuality v nefrologii. TIGIS, 2009, vol. 15, No 2, p. 74-77. ISSN 1210-955X.
      More: https://is.muni.cz/publication/862851/en
    20. Jak zlepšit využívání dostupných dat a vzorců ? Odpověd zní: MEDIGRID
      SMRŽOVÁ, Jana, Martin KUBA, Robert RAKOWSKI, Michal PROCHÁZKA and Zora SEBESTIANOVÁ. Jak zlepšit využívání dostupných dat a vzorců ? Odpověd zní: MEDIGRID. Diabetologie, metabolismus, endokrinologie, výživa. Praha: Tigis, 2009, vol. 12, supplem. 1, p. 62-63, 1 pp. ISSN 1211-9326.
      More: https://is.muni.cz/publication/845968/en
    21. jSon: Network of Active Elements with Peer-to-Peer Control Plane
      PROCHÁZKA, Michal, Petr HOLUB and Eva HLADKÁ. jSon: Network of Active Elements with Peer-to-Peer Control Plane. In The Eighth International Conference on Networks ICN 2009. Cancun, Mexico: IARIA, 2009, 8 pp. ISBN 978-0-7695-3552-4.
      More: https://is.muni.cz/publication/820540/en
    22. MEDIGRID - váš program pro vaše pacienty
      SMRŽOVÁ, Jana, Martin KUBA, Rakowski ROBERT, Michal PROCHÁZKA and Zora SEBESTIANOVÁ. MEDIGRID - váš program pro vaše pacienty. Vnitřní lékařství - časopis České internistické společnosti a Slovenskej internistickej spoločnosti. Praha: Česká lékařská společnost J. E. Purkyně, 2009, vol. 55, No 9, p. 885. ISSN 0042-773X.
      More: https://is.muni.cz/publication/845971/en
    23. MetaCenter Virtual Networks
      ANTOŠ, David, Jiří SITERA, Luděk MATYSKA and Petr HOLUB. MetaCenter Virtual Networks. In Cracow Grid Workshop 2008. Cracow, Poland: Cyfronet AGH, Kraków, Poland, 2009, p. 86-93. ISBN 978-83-61433-00-2.
      More: https://is.muni.cz/publication/826835/en
    24. MetaCentrum, the Czech Virtualized NGI
      ŠUSTR, Zdeněk, Jiří SITERA, Miloš MULAČ, Miroslav RUDA, David ANTOŠ, Lukáš HEJTMÁNEK, Petr HOLUB, Zdeněk SALVET and Luděk MATYSKA. MetaCentrum, the Czech Virtualized NGI. 2009.
      More: https://is.muni.cz/publication/857345/en
    25. Metadatový editor (Metadata Editor)
      BARTOŠEK, Miroslav, Petr KOVÁŘ and Martin ŠÁRFY. Metadatový editor (Metadata Editor). 2009.
      More: https://is.muni.cz/publication/866297/en
    26. Network Identity Manager Providers
      KOUŘIL, Daniel, Michal PROCHÁZKA, Tomáš KUBINA, Jeffrey ALTMAN and Asanka HERATH. Network Identity Manager Providers. In AFS & Kerberos Best Practices Workshop. 2009.
      More: https://is.muni.cz/publication/843019/en
    27. Prezentační systém digitální knihovny DML-CZ (Digital Library Presentation System DML-CZ)
      BARTOŠEK, Miroslav, Vlastimil KREJČÍŘ and Martin ŠÁRFY. Prezentační systém digitální knihovny DML-CZ (Digital Library Presentation System DML-CZ). 2009.
      More: https://is.muni.cz/publication/866300/en
    28. Robust Audio Tool (RAT) Supporting Separate Recording and Playback Audio Devices Selection
      REBOK, Tomáš, Martin BENEŠ and Milan KABÁT. Robust Audio Tool (RAT) Supporting Separate Recording and Playback Audio Devices Selection. 2009.
      More: https://is.muni.cz/publication/862405/en
    29. Správa dat v gridových systémech (Data Management in Grid Systems)
      ANTOŠ, David, Lukáš HEJTMÁNEK, Jiří CHUDOBA, Daniel KOUŘIL, Luděk MATYSKA and Michal PROCHÁZKA. Správa dat v gridových systémech (Data Management in Grid Systems). In Proceedings of the Annual Database Conference DATAKON 2009. 1st ed. Praha: Oeconomica, Praha, 2009, p. 251-265. ISBN 978-80-245-1568-7.
      More: https://is.muni.cz/publication/849978/en
    30. UltraGrid-20090105 (software)
      HOLUB, Petr, Miloš LIŠKA, Jiří MATELA, Martin BENEŠ and Ian N. WESLEY-SMITH. UltraGrid-20090105. 2009.
      More: https://is.muni.cz/publication/895708/en
    31. Úskalí PKI v praxi - část I (Practical problems of PKI - part I)
      KOUŘIL, Daniel and Michal PROCHÁZKA. Úskalí PKI v praxi - část I (Practical problems of PKI - part I). DSM. Praha: Tate International, s.r.o., 2009, XIII, No 1. ISSN 1211-8737.
      More: https://is.muni.cz/publication/842974/en
    32. Úskalí PKI v praxi - část II (Practical problems of PKI - part II)
      KOUŘIL, Daniel and Michal PROCHÁZKA. Úskalí PKI v praxi - část II (Practical problems of PKI - part II). DSM. Praha: Tate International, s.r.o., 2009, XIII, No 2, p. 40-44. ISSN 1211-8737.
      More: https://is.muni.cz/publication/842972/en
    33. Videokonference - moderní cesta realizace lékařských konzilií a konzultací
      SMRŽOVÁ, Jana, Martin KUBA, Robert RAKOWSKI and Michal PROCHÁZKA. Videokonference - moderní cesta realizace lékařských konzilií a konzultací. Diabetologie, metabolismus, endokrinologie, výživa. Praha: Tigis, 2009, vol. 12, supplem. 1, p. 63. ISSN 1211-9326.
      More: https://is.muni.cz/publication/857587/en
    34. Videokonference - prostředek pro vedení lékařských konzilií a konzultací
      SMRŽOVÁ, Jana, Martin KUBA, Robert RAKOWSKI and Michal PROCHÁZKA. Videokonference - prostředek pro vedení lékařských konzilií a konzultací. Cor et Vasa - Časopis České kardiologické společnosti. Brno: Česká kardiologická společnost, 2009, vol. 2009, Suppl. 1, 1 pp. ISSN 1803-7712.
      More: https://is.muni.cz/publication/857577/en
    35. VirtCloud: Virtual Network for User-controlled Virtual Clusters
      ANTOŠ, David, Luděk MATYSKA, Petr HOLUB and Jiří SITERA. VirtCloud: Virtual Network for User-controlled Virtual Clusters. 2009.
      More: https://is.muni.cz/publication/835700/en
    36. VirtCloud: Virtualising Network for Grid Environments--First Experiences
      ANTOŠ, David, Luděk MATYSKA, Petr HOLUB and Jiří SITERA. VirtCloud: Virtualising Network for Grid Environments--First Experiences. In The 23rd IEEE International Conference on Advanced Information Networking and Applications AINA 2009. Bradford, UK: IEEE Comp. Soc., 2009, p. 876-883. ISBN 978-1-4244-4000-9.
      More: https://is.muni.cz/publication/834899/en
    37. Virtual Clusters as a New Service of MetaCentrum, the Czech NGI; CESNET technical report 17/2009
      RUDA, Miroslav, Zdeněk ŠUSTR, Jiří SITERA, David ANTOŠ, Lukáš HEJTMÁNEK, Petr HOLUB and Miloš MULAČ. Virtual Clusters as a New Service of MetaCentrum, the Czech NGI; CESNET technical report 17/2009. 2009.
      More: https://is.muni.cz/publication/872422/en
    38. Zařízení pro skupinové vysílání optických signálů v Internetu a jiných sítích (Device for group multicasting of optical signals in Internet and other networks)
      VOJTĚCH, Josef, Miloslav HŮLA, Jan RADIL, Miroslav KARÁSEK, Stanislav ŠÍMA, Jan NEJMAN and Petr HOLUB. Zařízení pro skupinové vysílání optických signálů v Internetu a jiných sítích (Device for group multicasting of optical signals in Internet and other networks). 2009.
      More: https://is.muni.cz/publication/852409/en

    2008

    1. A Federated Framework for Secure Collaborative Systems
      PROCHÁZKA, Michal, Daniel KOUŘIL, Luděk MATYSKA, Tomáš KUBINA and Lukáš SPURNÝ. A Federated Framework for Secure Collaborative Systems. In EUNIS 2008 VISION IT, Visions for IT in Higher Education. Aarhus, Denmark: University of Aarhus, 2008, 9 pp. ISBN 978-87-91234-56-9.
      More: https://is.muni.cz/publication/821240/en
    2. A federated framework for secure videoconference
      PROCHÁZKA, Michal and Daniel KOUŘIL. A federated framework for secure videoconference. Stockholm, Sweden: Terena EuroCamp, 2008.
      More: https://is.muni.cz/publication/766361/en
    3. A Graphical Frontend to Key Services for Utilization of Grid Environments: A CharonGUI Use Case
      PLŠEK, Vítězslav, Jan KMUNÍČEK and Martin KUBA. A Graphical Frontend to Key Services for Utilization of Grid Environments: A CharonGUI Use Case. In 4th International Workshop on Grid Computing for Complex Problems (GCCP 2008). Bratislava, Slovakia: Institute of Informatics, Slovak Academy of Sciences, 2008, p. 28-35. ISBN 978-80-969202-9-7.
      More: https://is.muni.cz/publication/788635/en
    4. CoUniverse (software)
      HOLUB, Petr and Miloš LIŠKA. CoUniverse. 2008.
      More: https://is.muni.cz/publication/814276/en
    5. CoUniverse: Framework for Building Self-organizing Collaborative Environments Using Extreme-Bandwidth Media Applications
      LIŠKA, Miloš and Petr HOLUB. CoUniverse: Framework for Building Self-organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. In Lecture Notes in Computer Science vol. 5415 Euro-Par 2008 Workshops - Parallel Processing. Las Palmas de Gran Canaria, Spain: Springer Berlin / Heidelberg, 2008, p. 339-351, 12 pp. ISBN 978-3-642-00954-9.
      More: https://is.muni.cz/publication/769627/en
    6. Česká digitální matematická knihovna (Czech digital mathematics library)
      BARTOŠEK, Miroslav. Česká digitální matematická knihovna (Czech digital mathematics library). In INFORUM 2008: 14. ročník konference o profesionálních informačních zdrojích. Praha: Albertina icome Praha, 2008, 11 pp. ISSN 1801-2213.
      More: https://is.muni.cz/publication/773190/en
    7. Distributed Synchronous Infrastructure for Multimedia Streams Transmission and Processing
      REBOK, Tomáš and Petr HOLUB. Distributed Synchronous Infrastructure for Multimedia Streams Transmission and Processing. In Networking Studies II : Selected Technical Reports. Praha: CESNET z.s.p.o., 2008, p. 147-169. ISBN 978-80-254-2151-2.
      More: https://is.muni.cz/publication/770724/en
    8. DML-CZ Metadata Editor
      BARTOŠEK, Miroslav, Petr KOVÁŘ and Martin ŠÁRFY. DML-CZ Metadata Editor. In Towards Digital Mathematics Library. Brno: Masaryk University, 2008, p. 139-151. ISBN 978-80-210-4658-0.
      More: https://is.muni.cz/publication/773195/en
    9. DML-CZ: The Objectives and the First Steps
      BARTOŠEK, Miroslav, Martin LHOTÁK, Jiří RÁKOSNÍK, Petr SOJKA and Martin ŠÁRFY. DML-CZ: The Objectives and the First Steps. In Communicating Mathematics in the Digital Era. London: A.K. Peters Ltd., Transatlantic Publishers Group, 2008, p. 75-86, 11 pp. Sv. 1. ISBN 9781568814100.
      More: https://is.muni.cz/publication/707606/en
    10. Evaluation of the Introduction of the Use of e-Infrastructure Tools in the Research of Thalassaemia and Other Haemoglobinopathies
      HOLUB, Petr, Michael ANGASTINIOTIS, Christos SHAMMAS, John OLD, Fotis GEORGATOS and Carsten LEDERER. Evaluation of the Introduction of the Use of e-Infrastructure Tools in the Research of Thalassaemia and Other Haemoglobinopathies. In 2nd Ithanet Scientific Workshop, Singapore 2008. 2008.
      More: https://is.muni.cz/publication/794993/en
    11. Experience with Large Scale Simulations on the EGEE Grid for the AUGER collaboration
      SCHOVANCOVÁ, Jaroslava, Jiří CHUDOBA, František DVOŘÁK, Jiří FILIPOVIČ, Jan KMUNÍČEK, Aleš KŘENEK, Luděk MATYSKA, Miloš MILAČ, Miroslav RUDA, Zdeněk SALVET, Jiří SITERA, Zdeněk ŠUSTR and Petr TRÁVNÍČEK. Experience with Large Scale Simulations on the EGEE Grid for the AUGER collaboration. In Proceedings of the Third Conference of the EELA Project. Catania, Itálie: CIEMAT, 2008, p. 283-291, 8 pp. ISBN 978-84-7834-565-6.
      More: https://is.muni.cz/publication/800172/en
    12. gLite Job Provenance - a job-centric view
      KŘENEK, Aleš, Jiri SITERA, Luděk MATYSKA, Frantisek DVORAK, Miloš MULAČ, Miroslav RUDA and Zdeněk SALVET. gLite Job Provenance - a job-centric view. Concurrency and Computation: Practice and Experience. John Wiley & Sons, Inc, 2008, vol. 20, No 5, p. 453-462. ISSN 1532-0626. Available from: https://dx.doi.org/10.1002/cpe.1252.
      More: https://is.muni.cz/publication/979275/en
    13. High Quality Large Scale Virtual Classroom
      MATYSKA, Luděk, Eva HLADKÁ, Petr HOLUB and Miloš LIŠKA. High Quality Large Scale Virtual Classroom. In Proceedings of the 14th International Conference of European University Information Systems (EUNIS 2008). Århus, Denmark: Aarhus University, 2008, 4 pp. ISBN 978-87-91234-58-3.
      More: https://is.muni.cz/publication/769629/en
    14. Charon GUI: Feature Rich Interface to Distinct Grid Niches
      KMUNÍČEK, Jan, Martin KUBA, Vítězslav PLŠEK and Luděk MATYSKA. Charon GUI: Feature Rich Interface to Distinct Grid Niches. In 3rd EGEE User Forum, Clermont-Ferrand, France. 2008.
      More: https://is.muni.cz/publication/788642/en
    15. Identity Federation for Expert Only Access in a Large Virtual Community: Drug Interactions Use Case
      KUBA, Martin and Jana SMRŽOVÁ. Identity Federation for Expert Only Access in a Large Virtual Community: Drug Interactions Use Case. In HealhGrid 2008, Chicago. 2008.
      More: https://is.muni.cz/publication/769628/en
    16. Implementation of DXT Compression for UltraGrid
      WESLEY-SMITH, Ian N., Miloš LIŠKA and Petr HOLUB. Implementation of DXT Compression for UltraGrid. CESNET, 2008. Technical report 4/2008.
      More: https://is.muni.cz/publication/769644/en
    17. Integrovaná správa pověření pro e-learningové systémy
      KOUŘIL, Daniel, Luděk MATYSKA and Michal PROCHÁZKA. Integrovaná správa pověření pro e-learningové systémy. In SCO 2008. Brno: Masarykova univerzita, 2008, p. 117-122. ISBN 9788021046139.
      More: https://is.muni.cz/publication/821256/en
    18. Job Centric Monitoring on the Grid 7 years of experience with L&B and JP services
      RUDA, Miroslav, Jiri SITERA, Aleš KŘENEK, Luděk MATYSKA, Zdenek SUSTR and Michal VOCŮ. Job Centric Monitoring on the Grid 7 years of experience with L&B and JP services. In CESNET CONFERENCE 2008-SECURITY, MIDDLEWARE, AND VIRTUALIZATION-GLUE OF FUTURE NETWORKS. Praha: CESNET, 2008, p. 3-12. ISBN 978-80-904173-0-4.
      More: https://is.muni.cz/publication/979336/en
    19. Job Provenance - Insight into Very Large Provenance Datasets
      KŘENEK, Aleš, Luděk MATYSKA, Jiří SITERA, Miroslav RUDA, František DVOŘÁK, Jiří FILIPOVIČ, Zdeněk ŠUSTR and Zdeněk SALVET. Job Provenance - Insight into Very Large Provenance Datasets. In Provenance and Annotation of Data and Processes. Second International Provenance and Annotation Workshop, IPAW 2008; LNCS. Berlin: Springer Berlin / Heidelberg, 2008, p. 144-151. ISBN 978-3-540-89964-8.
      More: https://is.muni.cz/publication/795313/en
    20. Lékové interakce: program k jejich vyhledávání s možností doplňování dalších pozorovaných interakcí
      KUBA, Martin and Jana SMRŽOVÁ. Lékové interakce: program k jejich vyhledávání s možností doplňování dalších pozorovaných interakcí. Vnitřní lékařství - časopis České internistické společnosti a Slovenskej internistickej spoločnosti. Praha: Česká lékařská společnost J. E. Purkyně, 2008, vol. 54, No 9, p. 897. ISSN 0042-773X.
      More: https://is.muni.cz/publication/788638/en
    21. Lékové interakce: program k jejich vyhledávání s možností doplňování dalších pozorovaných interakcí
      KUBA, Martin and Jana SMRŽOVÁ. Lékové interakce: program k jejich vyhledávání s možností doplňování dalších pozorovaných interakcí. Aktuality v nefrologii. TIGIS, 2008, 14/2008, No 2, p. 80-80. ISSN 1210-955X.
      More: https://is.muni.cz/publication/774264/en
    22. MetaCenter Virtual Networks
      ANTOŠ, David, Jiří SITERA, Luděk MATYSKA and Petr HOLUB. MetaCenter Virtual Networks. In Cracow Grid Workshop 2008. 2008.
      More: https://is.muni.cz/publication/785393/en
    23. Nový bezplatný program pro zobrazení známých i zachycení nových lékových interakcí
      KUBA, Martin and Jana SMRŽOVÁ. Nový bezplatný program pro zobrazení známých i zachycení nových lékových interakcí. In XVI. výroční sjezd České kardiologické společnosti, Brno. Praha: Medical Tribune CZ, 2008, p. 58.
      More: https://is.muni.cz/publication/774265/en
    24. Optimalizace využití biometrických údajů pacientů pomocí programu Medigrid
      KUBA, Martin and Jana SMRŽOVÁ. Optimalizace využití biometrických údajů pacientů pomocí programu Medigrid. In XVI. výroční sjezd České kardiologické společnosti, Brno. Praha. Medical Tribune CZ, 2008, p. 58.
      More: https://is.muni.cz/publication/774266/en
    25. Pathology Atlases - Service Provider in a Multi-Federation Environment
      PROCHÁZKA, Michal. Pathology Atlases - Service Provider in a Multi-Federation Environment. Athens, Greece: Terena EuroCamp, 2008.
      More: https://is.muni.cz/publication/797104/en
    26. Program zobrazující lékové interakce s možností připsání dalších pozorovaných interakcí
      KUBA, Martin and Jana SMRŽOVÁ. Program zobrazující lékové interakce s možností připsání dalších pozorovaných interakcí. Diabetologie Metabolismus Endokrinologie Výživa. Praha: Tigis s.r.o., 2008, Ročník 11, Suplem. 1, p. 54. ISSN 1211-9326.
      More: https://is.muni.cz/publication/764902/en
    27. Souborný katalog ČR
      VOCHOZKOVÁ, Hana. Souborný katalog ČR. Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: Masarykova univerzita, 2008, roč. 19, č. 2, p. 11-12. ISSN 1212-0901.
      More: https://is.muni.cz/publication/879908/en
    28. Survey of Authentication Mechanisms for Grids
      PROCHÁZKA, Michal and Daniel KOUŘIL. Survey of Authentication Mechanisms for Grids. In CESNET Conference 2008. Praha: CESNET, z.s.p.o., 2008, 10 pp. ISBN 978-80-904173-0-4.
      More: https://is.muni.cz/publication/821241/en
    29. UltraGrid
      HOLUB, Petr. UltraGrid. In CineGrid International Workshop 2008 (3rd annual). 2008.
      More: https://is.muni.cz/publication/794996/en
    30. UltraGrid-20080530 (software)
      HOLUB, Petr, Miloš LIŠKA, Jiří MATELA and Ian N. WESLEY-SMITH. UltraGrid-20080530. 2008.
      More: https://is.muni.cz/publication/769656/en
    31. Updates on UltraGrid Platform
      HOLUB, Petr. Updates on UltraGrid Platform. In ResearchChannel Working Group, Internet2 Fall Member Meeting, New Orleans, LA, USA, 2008. 2008.
      More: https://is.muni.cz/publication/794994/en
    32. Updates on UltraGrid Platform
      HOLUB, Petr. Updates on UltraGrid Platform. Internet2 Spring Member Meeting, Arlington, VA, USA, 2008.
      More: https://is.muni.cz/publication/769632/en
    33. Videokonference jako nástroj pro vedení lékařských konzilií a konzultací
      SMRŽOVÁ, Jana, Martin KUBA, Dagmar HRŮZOVÁ, Michal PROCHÁZKA and Zora SEBESTIANOVÁ. Videokonference jako nástroj pro vedení lékařských konzilií a konzultací. Vnitřní lékařství - časopis České internistické společnosti a Slovenskej internistickej spoločnosti. Praha: Česká lékařská společnost J. E. Purkyně, 2008, vol. 54, No 9, p. 911-912. ISSN 0042-773X.
      More: https://is.muni.cz/publication/788640/en
    34. VirtCloud & CoUniverse: On E2E Services for Grids and Multimedia
      HOLUB, Petr. VirtCloud & CoUniverse: On E2E Services for Grids and Multimedia. In TERENA End-to-End Provisioning Workshop 2008. 2008.
      More: https://is.muni.cz/publication/794995/en
    35. Virtualizing METACentrum Resources Using Magrathea
      DENEMARK, Jiří, Miroslav RUDA and Luděk MATYSKA. Virtualizing METACentrum Resources Using Magrathea. In Networking Studies II: Selected Technical Reports. 1st ed. Praha: CESNET, 2008, p. 129-145. ISBN 978-80-254-2151-2.
      More: https://is.muni.cz/publication/775941/en

    2007

    1. A Robust and Efficient Mechanism to Distribute Certificate Revocation Information Using the Grid Monitoring Architecture
      KOUŘIL, Daniel, Luděk MATYSKA and Michal PROCHÁZKA. A Robust and Efficient Mechanism to Distribute Certificate Revocation Information Using the Grid Monitoring Architecture. In 21st International Conference on Advanced Information Networking and Applications Workshops (AINAW'07),. Niagara Falls, Canada: IEEE Computer Society, 2007, p. 614-619. ISBN 0-7695-2847-3.
      More: https://is.muni.cz/publication/718256/en
    2. Bezpečný distribuovaný úložný prostor (Secure distributed data storage)
      HEJTMÁNEK, Lukáš, Luděk MATYSKA and Michal PROCHÁZKA. Bezpečný distribuovaný úložný prostor (Secure distributed data storage). In Širokopásmové sítě a jejich aplikace. Olomouc: CESNET, z.s.p.o. a UP Olomouc, 2007, p. 60-65. ISBN 978-80-244-1687-8.
      More: https://is.muni.cz/publication/718669/en
    3. Bonding and aromaticity of cyclic phosphazenes viewed as interaction of Dnh fragments
      KAPIČKA, Libor, Pavel KUBÁČEK and Petr HOLUB. Bonding and aromaticity of cyclic phosphazenes viewed as interaction of Dnh fragments. Journal of Molecular Structure (Theochem). Amsterdam: Elsevier Science, 2007, vol. 820, 1-3, p. 148-158. ISSN 0166-1280.
      More: https://is.muni.cz/publication/725894/en
    4. Community Building in Distance Learning Environments: Using uncompressed high-definition videos as a medium for classroom interactivity.
      EILAND, Daniel, Thomas STERLING, Amy APON, Box LEANGSUKSUN and Petr HOLUB. Community Building in Distance Learning Environments: Using uncompressed high-definition videos as a medium for classroom interactivity. Chicago, USA: AccessGrid Retreat, 2007. AccessGrid Retreat 2007.
      More: https://is.muni.cz/publication/718667/en
    5. Designing a distributed mediator for the C-GMA monitoring architecture
      KRAJÍČEK, Ondřej, Andrea CECCANTI, Miroslav RUDA and Aleš KŘENEK. Designing a distributed mediator for the C-GMA monitoring architecture. In Distributed and Parallel Systems: From Cluster to Grid Computing. Innsbruck, Austria: Springer, 2007, p. 155-164. ISBN 978-0-387-69857-1.
      More: https://is.muni.cz/publication/725388/en
    6. Distributed Active Element in 10Gbps Network
      HOLUB, Petr and Eva HLADKÁ. Distributed Active Element in 10Gbps Network. In ICT 2007, 14th International Conference on Telecommunications. Penang, Malaysia: IEEE/MICC, 2007, p. 455-460. ISBN 978-1-4244-1094-1.
      More: https://is.muni.cz/publication/719151/en
    7. Distributed Synchronous Infrastructure for Multimedia Streams Transmission and Processing
      REBOK, Tomáš and Petr HOLUB. Distributed Synchronous Infrastructure for Multimedia Streams Transmission and Processing. CESNET z.s.p.o., 2007, 22 pp. 19/2007.
      More: https://is.muni.cz/publication/744933/en
    8. Enabling Technologies for Teaching an HPC Class as a Distributed Course.
      HOLUB, Petr, Ravi PARUCHURI, Stacey SIMMONS, Tomáš REBOK, Andrei HUTANU, Daniel EILAND and Miloš LIŠKA. Enabling Technologies for Teaching an HPC Class as a Distributed Course. In SPR2007 - The 9th Annual SURA/ViDe Conference, Atlanta, Internet2, USA. 2007.
      More: https://is.muni.cz/publication/718027/en
    9. Experience with PKI in a Large-scale Distributed Environment
      KOUŘIL, Daniel, Michal PROCHÁZKA and Luděk MATYSKA. Experience with PKI in a Large-scale Distributed Environment. In EUNIS 2007 Conference. Grenoble, France, 2007, 9 pp.
      More: https://is.muni.cz/publication/721394/en
    10. Federace identit aneb spolčení totožností (Introduction to Identity Federations)
      KOUŘIL, Daniel, Martin KUBA, Martin OSOVSKÝ, Radim PEŠA and Michal PROCHÁZKA. Federace identit aneb spolčení totožností (Introduction to Identity Federations). Zpravodaj ÚVT MU. Brno: Masarykova univerzita, 2007, vol. 18, No 2, p. 1-7, 8 pp. ISSN 1212-0901.
      More: https://is.muni.cz/publication/746289/en
    11. Graphical User Interface for Charon Extension Layer System and Application Dashboards
      KMUNÍČEK, Jan, Vítězslav PLŠEK and Martin KUBA. Graphical User Interface for Charon Extension Layer System and Application Dashboards. In Computational Chemistry Workshop, d'Orsay, Paris, France. 2007.
      More: https://is.muni.cz/publication/788644/en
    12. Grid Deployment Using Virtual Machines: METACenter Use-Case
      RUDA, Miroslav and Jiří DENEMARK. Grid Deployment Using Virtual Machines: METACenter Use-Case. DESY, Hamburg, Germany, 2007. Virtualization users workshop.
      More: https://is.muni.cz/publication/723108/en
    13. Grid Simulator with Production Scheduling Algorithms (abstract)
      RUDA, Miroslav and Hana RUDOVÁ. Grid Simulator with Production Scheduling Algorithms (abstract). Cracow, Poland, 2007. Cracow Grid Workshop '07.
      More: https://is.muni.cz/publication/726157/en
    14. HD Collaborative Framework for Distributed Distance Learning
      MATYSKA, Luděk, Petr HOLUB and Eva HLADKÁ. HD Collaborative Framework for Distributed Distance Learning. In Proceedings of the 4th High-End Visualization Workshop. Rakousko: University of Innsbruck, 2007, p. 40-45. ISBN 978-3-86541-216-4.
      More: https://is.muni.cz/publication/720371/en
    15. High Definition video ve výuce (HD video in teaching and learning)
      MATYSKA, Luděk, Eva HLADKÁ and Petr HOLUB. High Definition video ve výuce (HD video in teaching and learning). In Emtech Education|Media|Technology Prague 2007. 2007.
      More: https://is.muni.cz/publication/717755/en
    16. Identity Management in the Grid Environment
      PROCHÁZKA, Michal and Daniel KOUŘIL. Identity Management in the Grid Environment. Plzeň, 2007. The World of Digital Identity 2007.
      More: https://is.muni.cz/publication/718041/en
    17. Ithanet - developing en infrastructure of electronic communication for Thalassaemia research
      VEJVALKA, Jan, Petr HOLUB, Michal PROCHÁZKA, Miloš LIŠKA, Eva HLADKÁ, Michael ANGASTINIOTIS and Marina KLEANTHOUS. Ithanet - developing en infrastructure of electronic communication for Thalassaemia research. In Conference Proceedings of EMMIT 2007, Euro-Mediterranean Medical Informatics and Telemedicine, 3rd International Conference. , Mangalia 2007: Eds. Moisil, I., Teseleanu, M., Sicurello, F., 2007, p. 181-186. ISBN 978-973-739-423-1.
      More: https://is.muni.cz/publication/718023/en
    18. Jak se dělá digitální matematická knihovna (How to build a digital mathematics library)
      BARTOŠEK, Miroslav and Vlastimil KREJČÍŘ. Jak se dělá digitální matematická knihovna (How to build a digital mathematics library). In Automatizace knihovnických procesů - 11. Praha: ČVUT, 2007, p. 55-63. ISBN 978-80-01-03691-4.
      More: https://is.muni.cz/publication/773187/en
    19. Kerberos and Grid systems
      KOUŘIL, Daniel, Luděk MATYSKA, Michal PROCHÁZKA and Tomáš ZÁVODNÝ. Kerberos and Grid systems. Stanford, California, USA, 2007. AFS & Kerberos Best Practices Workshop 2007.
      More: https://is.muni.cz/publication/718042/en
    20. Magrathea -- Grid Management Using Virtual Machine
      DENEMARK, Jiří, Miroslav RUDA and Luděk MATYSKA. Magrathea -- Grid Management Using Virtual Machine. In Cracow Grid Workshop '06. Krakow, Polsko: Academic Computer Centre CYFRONET AGH, 2007, p. 138-145. ISBN 83-915141-7-X.
      More: https://is.muni.cz/publication/726928/en
    21. MediGrid jako prostředek sdílení biomedicínských zdrojů
      KUBA, Martin, Zora SEBESTIANOVÁ, Luděk MATYSKA, Jan VEJVALKA, Petr LESNÝ and Tomáš HOLEČEK. MediGrid jako prostředek sdílení biomedicínských zdrojů. In Širokopásmové sítě a jejich aplikace, sborník příspěvků. Olomouc: Univerzita Palackého v Olomouci, 2007, p. 79-82. ISBN 978-80-244-1687-8.
      More: https://is.muni.cz/publication/718744/en
    22. Message Level Security For Grid Services Using S/MIME
      KOUŘIL, Daniel, Ondřej KRAJÍČEK, Martin KUBA and Michal PROCHÁZKA. Message Level Security For Grid Services Using S/MIME. In Distributed and Parallel Systems (DAPSYS). Springer US, 2007, p. 123-131. ISBN 978-0-387-69857-1.
      More: https://is.muni.cz/publication/718082/en
    23. Nasazení federací ve velkém distribuovaném prostředí: systém pro správu interakcí léků (Federation deployment in large distributed environment: a system for medical drug interactions administration)
      KOUŘIL, Daniel, Martin KUBA and Michal PROCHÁZKA. Nasazení federací ve velkém distribuovaném prostředí: systém pro správu interakcí léků (Federation deployment in large distributed environment: a system for medical drug interactions administration). In DATAKON 2007 - Proceedings of the Annual Database Conference. 1st ed. Brno: Masarykova Univerzita, 2007, p. 132-141. ISBN 978-80-7355-076-9.
      More: https://is.muni.cz/publication/726535/en
    24. On Distribution Certificate Revocation Information in Grids
      KOUŘIL, Daniel, Luděk MATYSKA and Michal PROCHÁZKA. On Distribution Certificate Revocation Information in Grids. Brno, 2007. MEMICS 2007. ISBN 978-80-7355-077-6.
      More: https://is.muni.cz/publication/727189/en
    25. Sealed Grid with Downloadable Services
      KUBA, Martin, Daniel KOUŘIL and Michal PROCHÁZKA. Sealed Grid with Downloadable Services. In CoreGRID Symposium. Rennes, France: Springer, 2007, p. 83-91. ISBN 978-0-387-72497-3.
      More: https://is.muni.cz/publication/718257/en
    26. Secure and Pervasive Collaborative Platform for Medical Applications
      HOLUB, Petr, Eva HLADKÁ, Michal PROCHÁZKA and Miloš LIŠKA. Secure and Pervasive Collaborative Platform for Medical Applications. Studies in Health Technology and Informatics. Amsterdam, The Netherlands: IOS Press, 2007, vol. 126, No 1, p. 229-238. ISSN 0926-9630.
      More: https://is.muni.cz/publication/718031/en
    27. Secure Logistical Networking in Virtual Organizations
      HEJTMÁNEK, Lukáš, Luděk MATYSKA and Michal PROCHÁZKA. Secure Logistical Networking in Virtual Organizations. In Cracow'06 Grid Workshop. Krakow, Polsko: Academic Computer Centre CYFRONET AGH, 2007, p. 450-458. ISBN 83-915141-7-X.
      More: https://is.muni.cz/publication/722828/en
    28. Secure Logistical Networking in Virtual Organizations
      HEJTMÁNEK, Lukáš, Luděk MATYSKA and Michal PROCHÁZKA. Secure Logistical Networking in Virtual Organizations. CESNET z.s.p.o., 2007, 16 pp. 2/2007.
      More: https://is.muni.cz/publication/716206/en
    29. Scheduling Virtual Grids: the Magrathea System
      RUDA, Miroslav, Jiří DENEMARK and Luděk MATYSKA. Scheduling Virtual Grids: the Magrathea System. In Second International Workshop on Virtualization Technology in Distributed Computing. USA: ACM digital library, 2007, p. 1-7. ISBN 978-1-59593-897-8.
      More: https://is.muni.cz/publication/744929/en
    30. Streaming HD videa (HD video streaming)
      HOLUB, Petr and Eva HLADKA. Streaming HD videa (HD video streaming). In Sborník příspěvků konference Širokopásmové sítě a jejich aplikace. 1st ed. Olomouc: Univerzita Palackého v Olomouci, 2007, p. 100-102. ISBN 978-80-244-1687-8.
      More: https://is.muni.cz/publication/718691/en
    31. Transparent Security for Collaborative Environments
      PROCHÁZKA, Michal, Luděk MATYSKA, Eva HLADKÁ, Daniel KOUŘIL and Petr HOLUB. Transparent Security for Collaborative Environments. In The 3rd International Conference on Collaborative Computing: Networking, Applications and Worksharing. White Plains, New York: ICST, 2007, 6 pp. ISBN 1-4244-1317-6.
      More: https://is.muni.cz/publication/728110/en
    32. Trusted Distribution and Utilization of Virtual Machines
      KOUŘIL, Daniel, Luděk MATYSKA and Michal PROCHÁZKA. Trusted Distribution and Utilization of Virtual Machines. Austin, TX, USA: IEEE Computer Society, 2007. Grid 2007.
      More: https://is.muni.cz/publication/725373/en
    33. Uncompressed HD Video for Collaborative Teaching - An Experiment
      HUTANU, Andrei, Yufeng XIN, Steven THORPE, Petr HOLUB, Ravi PARUCHURI, Daniel EILAND and Miloš LIŠKA. Uncompressed HD Video for Collaborative Teaching - An Experiment. In The 3rd International Conference on Collaborative Computing: Networking, Applications and Worksharing. White Plains, New York: ICST, 2007, 6 pp. ISBN 1-4244-1317-6.
      More: https://is.muni.cz/publication/728231/en
    34. Usage of TPM under Xen
      PROCHÁZKA, Michal and Daniel KOUŘIL. Usage of TPM under Xen. DESY, Hamburg, Germany, 2007. Virtualization users workshop.
      More: https://is.muni.cz/publication/710099/en
    35. Using CRL Push Delivery for Efficient Certificate Revocation Information Distribution in Grids
      KOUŘIL, Daniel, Luděk MATYSKA and Michal PROCHÁZKA. Using CRL Push Delivery for Efficient Certificate Revocation Information Distribution in Grids. CESNET, 2007. Technical report.
      More: https://is.muni.cz/publication/746288/en
    36. Videokonference za zdí (Videoconferencing behind firewalls)
      HLADKÁ, Eva, Petr HOLUB and Michal PROCHÁZKA. Videokonference za zdí (Videoconferencing behind firewalls). Brno: MU, 2007, 4 pp. Zpravodaj ÚVT MU, 17, 5, 8-11. ISSN 1212-0901.
      More: https://is.muni.cz/publication/719345/en
    37. Virtual Classroom with a Time Shift
      MATYSKA, Luděk, Eva HLADKÁ and Petr HOLUB. Virtual Classroom with a Time Shift. In Proceedings of the Eigth International Technology Based Higher Education and Training. Kumamoto: Kumamoto Univerzity, 2007, p. 1-8.
      More: https://is.muni.cz/publication/747023/en
    38. Virtual Classroom with a Time Shift
      MATYSKA, Luděk, Eva HLADKÁ and Petr HOLUB. Virtual Classroom with a Time Shift. In Programm and Abstracts of 8th International Conference on Information Technology Based Higher Education and Training. 2007.
      More: https://is.muni.cz/publication/726363/en
    39. Web Deployed Interface for a Medical Knowledge Grid
      KUBA, Martin and Zora SEBESTIANOVÁ. Web Deployed Interface for a Medical Knowledge Grid. In The Second International Conference on Internet and Web Applications and Services (ICIW 2007). IEEE Digital Library: IEEE Computer Society Press, 2007, 5 pp. ISBN 0-7695-2844-9.
      More: https://is.muni.cz/publication/718168/en
    40. Zkušenosti s nasazením PKI v distribuovaném prostředí (Deploying PKI in a Distributed Environment)
      KOUŘIL, Daniel, Michal PROCHÁZKA and Luděk MATYSKA. Zkušenosti s nasazením PKI v distribuovaném prostředí (Deploying PKI in a Distributed Environment). In Bezpečnostní politika IS. Plzeň: Západočeská univerzita v Plzni, 2007, p. 33-39. ISBN 978-80-7043-554-0.
      More: https://is.muni.cz/publication/718780/en

    2006

    1. Active Element Network with P2P Control Plane
      PROCHÁZKA, Michal, Petr HOLUB and Eva HLADKÁ. Active Element Network with P2P Control Plane. In Self-Organizing Systems, Lecture Notes in Computer Science Volume 4124. 2006.
      More: https://is.muni.cz/publication/695936/en
    2. Active Elements for High-Definition Video Distribution
      HOLUB, Petr, Eva HLADKÁ, Jiří DENEMARK and Tomáš REBOK. Active Elements for High-Definition Video Distribution. In ICT 2006, 13th International Conference on Telecommunications. Funchal, Madeira: University of Aveiro, Portugal, 2006, p. 1-4. ISBN 972-98368-4-1.
      More: https://is.muni.cz/publication/635604/en
    3. Best Practices of User Account Management with Virtual Organization Based Access to Grid
      DENEMARK, Jiří, Michał JANKOWSKI, Aleš KŘENEK, Luděk MATYSKA, Norbert MEYER, Miroslav RUDA and Paweł WOLNIEWICZ. Best Practices of User Account Management with Virtual Organization Based Access to Grid. Lecture Notes in Computer Science. Springer Berlin/Heidelberg, 2006, vol. 3911, -, p. 633-642. ISSN 0302-9743.
      More: https://is.muni.cz/publication/694065/en
    4. Capability languages in C-GMA
      KRAJÍČEK, Ondřej, Aleš KŘENEK, Luděk MATYSKA, Miroslav RUDA and Jiří SITERA. Capability languages in C-GMA. In Proceedings of the Cracow Grid Workshop 2005. April 2006. Cracow: Academic Computer Center CYFRONET AGH, Cracow, Poland, 2006, p. 131-138. ISBN 83-915141-5-3.
      More: https://is.muni.cz/publication/634432/en
    5. Designing a Distributed Mediator for the C-GMA Monitoring Architecture
      KRAJÍČEK, Ondřej, Andrea CECCANTI, Aleš KŘENEK, Luděk MATYSKA and Miroslav RUDA. Designing a Distributed Mediator for the C-GMA Monitoring Architecture. In Proceedings of the Austrian Hungarian Workshop on Parallel and Distributed Systems 2006. 1st ed. Innsbruck, 2006, p. TO APPEAR, 10 pp.
      More: https://is.muni.cz/publication/705279/en
    6. Distributed Active Element for High-Performance Data Distribution
      HOLUB, Petr and Eva HLADKÁ. Distributed Active Element for High-Performance Data Distribution. In Network and Parallel Computing (NPC 2006). Tokio: University of Tokio, 2006, p. 27-36.
      More: https://is.muni.cz/publication/703248/en
    7. Distributed and collaborative visualization of large data sets using high-speed networks
      HUTANU, Andrei, Gabrielle ALLEN, Stephen D. BECK, Petr HOLUB, Hartmut KAISER, Archit KULSHRESTHA, Miloš LIŠKA, Jon MACLAREN, Luděk MATYSKA, Ravi PARUCHURI, Steffen PROHASKA, Ed SEIDEL, Brygg ULLMER and Shalini VENKATARAMAN. Distributed and collaborative visualization of large data sets using high-speed networks. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2006, vol. 22, No 8, p. 1004-1010. ISSN 0167-739X.
      More: https://is.muni.cz/publication/694008/en
    8. Grid Empowered Sharing of Medical Expertise
      KUBA, Martin, Ondřej KRAJÍČEK, Petr LESNÝ, Jan VEJVALKA and Tomáš HOLEČEK. Grid Empowered Sharing of Medical Expertise. In Challenges and Opportunities of HealthGrids, Proceedings of HealthGrid 2006. Amsterdam (Netherlands): IOS Press, 2006, p. 273-282. ISBN 1-58603-617-3.
      More: https://is.muni.cz/publication/637426/en
    9. HD Multi-point Videoconferencing
      HOLUB, Petr. HD Multi-point Videoconferencing. In TERENA Networking Conference 2006. 2006.
      More: https://is.muni.cz/publication/635605/en
    10. HDTV streaming
      HLADKÁ, Eva and Petr HOLUB. HDTV streaming. In Proceedings of Inteligent Technologies for Remote Information and Communication International Conference ITVIK 2006. Pardubice: UP Pardubice INTELIGENTNÍ TECHNOLOGIE PRO VZDÁLENOU INFORMACI A KOMUNIKACI, 2006, p. 31 -33. ISBN 80-903478-5-1.
      More: https://is.muni.cz/publication/705248/en
    11. High-definition multimedia for multiparty low-latency interactive communication
      HOLUB, Petr, Luděk MATYSKA, Miloš LIŠKA, Lukáš HEJTMÁNEK, Jiří DENEMARK, Tomáš REBOK, Andrei HUTANU, Ravi PARUCHURI, Jan RADIL and Eva HLADKÁ. High-definition multimedia for multiparty low-latency interactive communication. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2006, vol. 22, No 8, p. 856-861. ISSN 0167-739X.
      More: https://is.muni.cz/publication/694007/en
    12. iGrid2005
      HOLUB, Petr, Eva HLADKÁ and Luděk MATYSKA. iGrid2005. Brno: Masarykova univerzita v Brně, 2006, 6 pp. Zpravodaj ÚVT MU, 16, 3, 12-17. ISSN 1212-0901.
      More: https://is.muni.cz/publication/628705/en
    13. Improving Security in Grids Using the Smart Card Technology
      KOUŘIL, Daniel, Luděk MATYSKA and Michal PROCHÁZKA. Improving Security in Grids Using the Smart Card Technology. In Proceedings of the IEEE/ACM International Conference on Grid Computing (Grid 2006). Barcelona, Spain: IEEE Computer Society, 2006, p. 303-304. ISBN 1-4244-0344-8.
      More: https://is.muni.cz/publication/696966/en
    14. Kerberos and PKI Cooperation
      KOUŘIL, Daniel, Luděk MATYSKA and Michal PROCHÁZKA. Kerberos and PKI Cooperation. Ann Arbor, Michigan, USA, 2006. AFS & Kerberos Best Practices Workshop 2006.
      More: https://is.muni.cz/publication/637564/en
    15. Low-Latency HD Videoconferencing System with Reflector-Based Multipoint Data Distribution
      HOLUB, Petr, Luděk MATYSKA, Miloš LIŠKA, Lukáš HEJTMÁNEK, Jiří DENEMARK and Tomáš REBOK. Low-Latency HD Videoconferencing System with Reflector-Based Multipoint Data Distribution. 2006.
      More: https://is.muni.cz/publication/706176/en
    16. Multi-Point Uncompressed HD Conferencing Using UltraGrid
      HOLUB, Petr. Multi-Point Uncompressed HD Conferencing Using UltraGrid. In WACE 2006. 2006.
      More: https://is.muni.cz/publication/705065/en
    17. Packet Filtering for FPGA-Based Routing Accelerator
      ANTOŠ, David, Vojtěch ŘEHÁK and Petr HOLUB. Packet Filtering for FPGA-Based Routing Accelerator. In CESNET Conference 2006 Proceedings. Prague: CESNET, z. s. p. o., 2006, p. 161--173. ISBN 80-239-6533-6.
      More: https://is.muni.cz/publication/630886/en
    18. Quality of Service Oriented Active Router Design
      REBOK, Tomáš, Petr HOLUB and Eva HLADKÁ. Quality of Service Oriented Active Router Design. In Proceedings of MIPRO 2006 / Hypermedia and Grid Systems. Opatija (Croatia): Croatian Society for Information and Communication Technology, Electronics and Microelectronics, 2006, p. 206-211. ISBN 953-233-018-6.
      More: https://is.muni.cz/publication/636478/en
    19. Scalable and Robust Active Element Network
      PROCHÁZKA, Michal and Miloš LIŠKA. Scalable and Robust Active Element Network. In CESNET Conference 2006. Praha: CESNET z.s.p.o., 2006, p. 107-114. ISBN 978-80-239-6533-9.
      More: https://is.muni.cz/publication/630965/en
    20. Secure References for Reliable Knowledge Sharing on the Biomedical Grid (Bezpečné reference pro spolehlivé sdílení znalostí v biomedicinském gridu)
      KRAJÍČEK, Ondřej, Václav LORENC and Martin KUBA. Secure References for Reliable Knowledge Sharing on the Biomedical Grid (Bezpečné reference pro spolehlivé sdílení znalostí v biomedicinském gridu). In Proceedings of the Second Workshop on Mathematical and Engineering Methods in Computer Science. 2006th ed. Brno: Vysoké učení technické v Brně, 2006, p. 83-90. ISBN 80-214-3287-X.
      More: https://is.muni.cz/publication/704951/en
    21. Standard Definition Stereoscopic Video
      LIŠKA, Miloš and Petr HOLUB. Standard Definition Stereoscopic Video. In Internet2 IMT2006. 2006.
      More: https://is.muni.cz/publication/705076/en
    22. Technologie digitálních knihoven (Technologies for Digital Libraries)
      BARTOŠEK, Miroslav. Technologie digitálních knihoven (Technologies for Digital Libraries). In INFORUM 2006. Praha: Albertina icome Praha, 2006, 8 pp.
      More: https://is.muni.cz/publication/637469/en
    23. Tipy z Inetu: Rezervace on-line
      HALUZOVÁ, Jana. Tipy z Inetu: Rezervace on-line. Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. 2006, roč. XVI, č. 5, p. 10-11. ISSN 1212-0901.
      More: https://is.muni.cz/publication/696146/en
    24. Uncompressed HD Technology
      HOLUB, Petr and Miloš LIŠKA. Uncompressed HD Technology. In Internet2 IMT2006. 2006.
      More: https://is.muni.cz/publication/705075/en
    25. User Management for Virtual Organizations
      DENEMARK, Jiří, Michał JANKOWSKI, Luděk MATYSKA, Norbert MEYER, Miroslav RUDA and Paweł WOLNIEWICZ. User Management for Virtual Organizations. In CoreGRID Integration Workshop. EU: CoreGRID, 2006.
      More: https://is.muni.cz/publication/694066/en
    26. Videokonference s vysokou kvalitou (High quality videoconferencing)
      HLADKÁ, Eva and Petr HOLUB. Videokonference s vysokou kvalitou (High quality videoconferencing). Brno: Masarykova univerzita v Brně, 2006, 4 pp. Zpravodaj ÚVT MU, 16, 3, 9-12. ISSN 1212-0901.
      More: https://is.muni.cz/publication/628704/en
    27. VOCE---A Grid Environment for Central Europe
      CHUDOBA, Jiří, Lukáš FIALA, Jan KMUNÍČEK, Jiří KOSINA, Daniel KOUŘIL, Miloš LOKAJÍČEK, Luděk MATYSKA, Miroslav RUDA and Jan ŠVEC. VOCE---A Grid Environment for Central Europe. In Proceedings of the Cracow Grid Workshop 2005. Cracow: Academic Computer Center CYFRONET AGH, Cracow, Poland, 2006, p. 322-328. ISBN 83-915141-5-3.
      More: https://is.muni.cz/publication/634686/en
    28. Všichni chceme Eduroam!
      PROCHÁZKA, Michal. Všichni chceme Eduroam! Brno: Masarykova univerzita v Brně, 2006. Zpravodaj ÚVT MU, 17, 2, 4-6. ISSN 1212-0901.
      More: https://is.muni.cz/publication/710096/en
    29. Web Service Based Knowledge Grid for Biomedicine
      KUBA, Martin and Miloš LIŠKA. Web Service Based Knowledge Grid for Biomedicine. In Proceedings of MIPRO 2006 / Hypermedia and Grid Systems. Opatija (Croatia): Croatian Society for Information and Communication Technology, Electronics and Microelectronics, 2006, p. 191-193. ISBN 953-233-018-6.
      More: https://is.muni.cz/publication/636404/en
    30. Web Services
      KUBA, Martin. Web Services. In DATAKON 2006, Proceedings of the Annual Database Conference. Brno, 2006, p. 93-112. ISBN 80-210-4102-1.
      More: https://is.muni.cz/publication/698656/en
    31. Zkušenosti s nasazováním HW tokenů pro uživatele METACentra (Deployment of HW Tokens among METACentre Users)
      KOUŘIL, Daniel and Michal PROCHÁZKA. Zkušenosti s nasazováním HW tokenů pro uživatele METACentra (Deployment of HW Tokens among METACentre Users). In Sborník příspěvků z XXVIII. konference EurOpen.CZ. Plzeň: EurOpen.CZ, 2006, p. 35-47. ISBN 80-86583-10-4.
      More: https://is.muni.cz/publication/636786/en

    2005

    1. Akademické lambda sítě u nás a ve světě (Academic lambda services in our country and around the world)
      HOLUB, Petr and Jan RADIL. Akademické lambda sítě u nás a ve světě (Academic lambda services in our country and around the world). Brno: Masarykova univerzita v Brně, 2005, 7 pp. Zpravodaj ÚVT MU, 15, 3, 6-12. ISSN 1212-0901.
      More: https://is.muni.cz/publication/572530/en
    2. Capability and Attribute Based GRID Monitoring Architecture
      SITERA, Jiří, Luděk MATYSKA, Aleš KŘENEK, Miroslav RUDA, Michal VOCŮ, Zdeněk SALVET and Miloš MULAČ. Capability and Attribute Based GRID Monitoring Architecture. In Proc. Cracow Grid Workshop'04. Krakow, Polsko: Academic Computing Centre CYFRONET AGH, 2005, p. 176-183. ISBN 83-9151414-4-5.
      More: https://is.muni.cz/publication/586082/en
    3. CCP - A Communication Protocol for Masaryk University Clearing
      MĚCHÁČEK, Jaroslav, Jaromír OCELKA and Jana KOHOUTKOVÁ. CCP - A Communication Protocol for Masaryk University Clearing. In Proc. of EUNIS'2005. Manchester: University of Manchester, 2005, p. 1-5.
      More: https://is.muni.cz/publication/573223/en
    4. Distribuované datové sklady a protokol IBP (Distributed Data Storage and IBP Protocol)
      HEJTMÁNEK, Lukáš, Petr HOLUB and Luděk MATYSKA. Distribuované datové sklady a protokol IBP (Distributed Data Storage and IBP Protocol). Praha: DCD Publishing s.r.o., 2005, 7 pp. Professional Computing, 2005/9, 15-21. ISSN 1214-5335.
      More: https://is.muni.cz/publication/594524/en
    5. Elektronická podpora evidence majetku na MU v Brně
      HALUZOVÁ, Jana and Zdeněk MACHAČ. Elektronická podpora evidence majetku na MU v Brně. Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. 2005, roč. XV, č. 4, p. 11-13. ISSN 1212-0901.
      More: https://is.muni.cz/publication/571230/en
    6. Grid Scheduling and Monitoring
      RUDA, Miroslav and Hana RUDOVÁ. Grid Scheduling and Monitoring. Workshop of the UK Planning and Scheduling Special Interest Group. London, UK: City University, UK, 2005, vol. 2005, -, p. 98-99. ISSN 1368-5708.
      More: https://is.muni.cz/publication/621515/en
    7. Grid Video Processing: Distributed Approach to Video Processing
      HOLUB, Petr. Grid Video Processing: Distributed Approach to Video Processing. Philadelphia, PA, USA: Internet2, 2005. I2 Fall 2005 Member Meeting.
      More: https://is.muni.cz/publication/580182/en
    8. High-Definition Video at CESNET
      HOLUB, Petr. High-Definition Video at CESNET. Philadelphia, PA, USA: Internet2, 2005. I2 Fall 2005 Member Meeting.
      More: https://is.muni.cz/publication/580181/en
    9. High-Definition Video Transmissions for Medical Applications and Education
      HOLUB, Petr and Miloš LIŠKA. High-Definition Video Transmissions for Medical Applications and Education. Technology and Health Care. Amsterdam (The Netherlands): IOS Press, 2005, vol. 13, No 5, p. 398-400. ISSN 0928-7329.
      More: https://is.muni.cz/publication/592824/en
    10. Implementace P2P sítě zrcadel v prostředí JXTA (Peer to Peer network of reflectors in JXTA environment)
      PROCHÁZKA, Michal, Tomáš REBOK and Petr HOLUB. Implementace P2P sítě zrcadel v prostředí JXTA (Peer to Peer network of reflectors in JXTA environment). In Širokopásmové sítě a jejich aplikace. Olomouc: CVT UP Olomouc, 2005, p. 144-152. ISBN 80-244-1035-4.
      More: https://is.muni.cz/publication/570112/en
    11. Infrastructure for Adaptive Workflows in Semantic Grids
      BOCCHI, Laura, Ondřej KRAJÍČEK and Martin KUBA. Infrastructure for Adaptive Workflows in Semantic Grids. In Proceedings of the first CoreGRID Integration Workshop. Pisa: University of Pisa, 2005, p. 327-336.
      More: https://is.muni.cz/publication/588663/en
    12. Integration of Medical Services Using Semantic Grid Techniques
      KUBA, Martin. Integration of Medical Services Using Semantic Grid Techniques. Technology and Health Care. Amsterdam (The Netherlands): IOS Press, 2005, vol. 13, No 5, p. 410-411. ISSN 0928-7329.
      More: https://is.muni.cz/publication/592625/en
    13. Ke koncepci elektronické podpory výuky v akademickém prostředí (On the conception of e-learning in the academic environment)
      RAMBOUSEK, Jiří, Tamara VÁŇOVÁ and Daniel MIKŠÍK. Ke koncepci elektronické podpory výuky v akademickém prostředí (On the conception of e-learning in the academic environment). In SOJKA, Petr and Tomáš PITNER. Sborník 2. ročníku konference o elektornické podpoře výuky SCO 2005. 1st ed. Brno: Masarykova univerzita v Brně, 2005, p. 237-242. ISBN 80-210-3699-0.
      More: https://is.muni.cz/publication/572900/en
    14. Lecture Recording, Processing, Archiving, and Streaming
      HOLUB, Petr and Miloš LIŠKA. Lecture Recording, Processing, Archiving, and Streaming. Atlanta, Internet2, USA: SURA/ViDe, 2005. SPR2005 - The 7th Annual SURA/ViDe Conference.
      More: https://is.muni.cz/publication/570108/en
    15. Network and Grid Support for Multimedia Distribution and Processing
      HOLUB, Petr. Network and Grid Support for Multimedia Distribution and Processing. Brno: Masarykova univerzita v Brne, 2005, 117 pp. Ph.D. Thesis.
      More: https://is.muni.cz/publication/593864/en
    16. Scalability and Robustness of Virtual Multicast for Synchronous Multimedia Distribution
      HOLUB, Petr, Eva HLADKÁ and Luděk MATYSKA. Scalability and Robustness of Virtual Multicast for Synchronous Multimedia Distribution. In Pascal Lorenz, Petre Dini. Lecture Notes in Computer Science 3421. Germany: Springer Berlin / Heidelberg, 2005, p. 876-883. ISBN 978-3-540-25338-9. Available from: https://dx.doi.org/10.1007/978-3-540-31957-3_99.
      More: https://is.muni.cz/publication/570106/en
    17. Semantic Grid Infrastructure for Applications in Biomedicine
      KUBA, Martin, Ondřej KRAJÍČEK, Petr LESNÝ and Tomáš HOLEČEK. Semantic Grid Infrastructure for Applications in Biomedicine. In DATAKON 2005 - Proceedings of the Annual Database Conference. 1st ed. Brno, 2005, p. 335-344. ISBN 80-210-3813-6.
      More: https://is.muni.cz/publication/584301/en
    18. Serverová infrastruktura informačních systémů MU
      OCELKA, Jaromír. Serverová infrastruktura informačních systémů MU. Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: Masarykova univerzita, 2005, vol. 15, No 5, p. 4-8. ISSN 1212-0901.
      More: https://is.muni.cz/publication/573215/en
    19. Towards Scalable and Interoperable Grid Monitoring Infrastructure
      CECCANTI, Andrea, Ondřej KRAJÍČEK, Aleš KŘENEK, Luděk MATYSKA and Miroslav RUDA. Towards Scalable and Interoperable Grid Monitoring Infrastructure. In Proceedings of the first CoreGRID Integration Workshop. Pisa: University of Pisa, Italy, 2005, p. 237-246.
      More: https://is.muni.cz/publication/588662/en
    20. Tutoriál Web Services (Web Services Tutorial)
      KUBA, Martin. Tutoriál Web Services (Web Services Tutorial). XXVI. konference EurOpen.CZ. Monínec, 2005.
      More: https://is.muni.cz/publication/596346/en
    21. Ubiquitous User-Empowered Networks of Active Elements
      HOLUB, Petr and Eva HLADKÁ. Ubiquitous User-Empowered Networks of Active Elements. In TERENA Networking Conference 2005. Poznan, Poland: TERENA, 2005, p. 1-3.
      More: https://is.muni.cz/publication/570135/en
    22. User Management for Virtual Organizations
      MATYSKA, Luděk, Miroslav RUDA, Jiří DENEMARK, Norbert MEYER, Paweł WOLNIEWICZ and Michał JANKOWSKI. User Management for Virtual Organizations. EU: CoreGRID, 2005. TR-0012.
      More: https://is.muni.cz/publication/595384/en
    23. Videokonferenční technologie a přenosy videa (Videoconference technologies and video transfers)
      HOLUB, Petr, Tomáš REBOK and Miloš LIŠKA. Videokonferenční technologie a přenosy videa (Videoconference technologies and video transfers). Šumava: EurOpen 2005, 2005.
      More: https://is.muni.cz/publication/592707/en
    24. Vysílání koncertu k výročí 50 let sboru Kantiléna (Broadcasting of a Concert Celebrating 50 Years of Kantilena)
      HOLUB, Petr, Miloš LIŠKA, Jaroslav LEDVINKA and David KOVALSKÝ. Vysílání koncertu k výročí 50 let sboru Kantiléna (Broadcasting of a Concert Celebrating 50 Years of Kantilena). Brno: Masarykova univerzita v Brně, 2005, 5 pp. Zpravodaj ÚVT MU, 16, 2, 16-20. ISSN 1212-0901.
      More: https://is.muni.cz/publication/594509/en

    2004

    1. Budování hlasové sítě MU: podpora telefonie v informačních systémech
      KOTRBA, Josef and Jaromír OCELKA. Budování hlasové sítě MU: podpora telefonie v informačních systémech. Zpravodaj Ústavu výpočetní techniky Masarykovy univerzity v Brně. Brno: Masarykova univerzita v Brně, 2004, vol. 14, No 4, p. 1-5. ISSN 1212-0901.
      More: https://is.muni.cz/publication/570445/en
    2. DiDaS/LoCI Infrastructure for Distributed Video Processing
      HEJTMÁNEK, Lukáš, Petr HOLUB and Luděk MATYSKA. DiDaS/LoCI Infrastructure for Distributed Video Processing. In Internet2 Fall Member Meeting 2004, Austin, Texas, USA. 2004.
      More: https://is.muni.cz/publication/561460/en
    3. Digitální knihovny - teorie a praxe (Digital Libraries in Theory and Practice)
      BARTOŠEK, Miroslav. Digitální knihovny - teorie a praxe (Digital Libraries in Theory and Practice). Národní knihovna. Knihovnická revue. Praha: Národní knihovna ČR, 2004, vol. 15, No 4, p. 233-251. ISSN 0862-7487.
      More: https://is.muni.cz/publication/569691/en
    4. Distribuované kódování videa (Distributed Video Encoding)
      HOLUB, Petr. Distribuované kódování videa (Distributed Video Encoding). Praha: ATLANTIDA Publishing s.r.o., 2004, 2 pp. Pixel 94, 46-47. ISSN 1211-5401.
      More: https://is.muni.cz/publication/562809/en
    5. Distribuované prostředí pro kódování multimédií (Distributed environment for multimedia encoding)
      HOLUB, Petr. Distribuované prostředí pro kódování multimédií (Distributed environment for multimedia encoding). Brno: Masarykova univerzita v Brně, 2004, 4 pp. Zpravodaj ÚVT MU, 14, 5, 6-9.
      More: https://is.muni.cz/publication/557383/en
    6. Distributed Encoding Environment Based on Grids and IBP Infrastructure
      HOLUB, Petr and Lukáš HEJTMÁNEK. Distributed Encoding Environment Based on Grids and IBP Infrastructure. In Selected Papers from TERENA Networking Conference 2004. TERENA, 2004, 10 pp. ISBN 90-77559-04-3.
      More: https://is.muni.cz/publication/554536/en
    7. Distributed Tracking, Storage, and Re-use of Job State Information on the Grid
      KOUŘIL, Daniel, Aleš KŘENEK, Luděk MATYSKA, Miloš MULAČ, Jan POSPÍŠIL, Miroslav RUDA, Zdeněk SALVET, Jiří SITERA, Jiří ŠKRABAL and Michal VOCŮ. Distributed Tracking, Storage, and Re-use of Job State Information on the Grid. 2004, 4 pp.
      More: https://is.muni.cz/publication/559204/en
    8. E-learning přichází. Sborník příspěvků ze setkání SCO 2004: E-learning přichází
      RAMBOUSEK, Jiří and Daniel MIKŠÍK. E-learning přichází. Sborník příspěvků ze setkání SCO 2004: E-learning přichází. Brno: Masarykova univerzita, 2004, 86 pp. ISBN 80-210-3409-2.
      More: https://is.muni.cz/publication/569397/en
    9. Grid Infrastructure Monitoring as Reliable Information Service
      HOLUB, Petr, Martin KUBA, Luděk MATYSKA and Miroslav RUDA. Grid Infrastructure Monitoring as Reliable Information Service. In Grid Computing, Second European AcrossGrids Conference, AxGrids 2004, Lecture Notes in Computer Science 3165. Berlin / Heidelberg: Springer-Verlag, 2004, p. 220-229. ISBN 3-540-22888-8.
      More: https://is.muni.cz/publication/554535/en
    10. GSIP - An Alternative Web Services Invocation Protocol
      KRAJÍČEK, Ondřej and Petr HOLUB. GSIP - An Alternative Web Services Invocation Protocol. In Proceedings of the 10th International Conference of European University Information Systems (EUNIS). 1st ed. 2004, 6 pp. ISBN 961-6209-46-9.
      More: https://is.muni.cz/publication/554537/en
    11. Lambda služby (Lambda services)
      HOLUB, Petr. Lambda služby (Lambda services). Brno: Masarykova univerzita v Brně, 2004, 6 pp. Zpravodaj ÚVT MU, 15, 2, 8-13.
      More: https://is.muni.cz/publication/562274/en
    12. Masaryk University Clearing System
      MĚCHÁČEK, Jaroslav, Jana KOHOUTKOVÁ, Lucie BURIANOVÁ, Alena JURTÍKOVÁ, Ivan JEDLIČKA and Ivan BURIAN. Masaryk University Clearing System. In Proc. of EUNIS'2004. Ljubljana: Univerza v Ljubljani, 2004, p. 316-320. ISBN 961-6209-46-9.
      More: https://is.muni.cz/publication/556583/en
    13. Metody tvorby www prezentací - zkušenosti z Masarykovy univerzity v Brně
      OCELKOVÁ, Šárka and Jaromír OCELKA. Metody tvorby www prezentací - zkušenosti z Masarykovy univerzity v Brně. In ITAT 2003 Information Technologies - Application and theory. první. Košice, UPJŠ v Košiciach: Edicné stredisko UPJŠ, 2004, p. 123-132. ISBN 80-7097-564-4.
      More: https://is.muni.cz/publication/560047/en
    14. Modulární komunikační reflektor s DV přenosem (Modular communicastion reflestor and DV data transfer)
      HLADKÁ, Eva, Petr HOLUB and Miloš LIŠKA. Modulární komunikační reflektor s DV přenosem (Modular communicastion reflestor and DV data transfer). In Sborník konference Vysokorychlostní sítě 2004. Praha: Univerzita Karlova v Praze, 2004, p. 42-47.
      More: https://is.muni.cz/publication/554317/en
    15. Notes on Scalable Models for Synchronous Multimedia Distribution
      HOLUB, Petr. Notes on Scalable Models for Synchronous Multimedia Distribution. CESNET z.s.p.o., 2004, 9 pp. Technical report 10/2004.
      More: https://is.muni.cz/publication/562275/en
    16. Odvaha být [orig. The Courage To Be]
      TILLICH, Paul Johannes Oskar. Odvaha být [orig. The Courage To Be]. Překlad Daniel Mikšík. Vydání první. Brno: Centrum pro studium demokracie a kultury (CDK), 2004, 138 pp. Cogitatio religionis 1. ISBN 80-7325-016-0.
      More: https://is.muni.cz/publication/561205/en
    17. Practical approaches to Grid workload and resource management in the EGEE project
      ANDREETTO, P., Valentina BORGIA, A. DORIGO, A. GIANELLE, M. MORDACCHINI, M. SGARAVATTO, L. ZANGRANDO, S. ANDREOZZI, V. CIASCHINI, C. DI GIUSTO, F. GIACOMINI, V. MEDICI, E. RONCHIERI, V. VENTURI, G. AVELLINO, S. BECO, A. MARASCHINI, F. PACINI, A. GUARISE and G. PATANIA. Practical approaches to Grid workload and resource management in the EGEE project. 2004, 4 pp.
      More: https://is.muni.cz/publication/559205/en
    18. Přenosy dat v heterogenním prostředí (Data transfer in heterogeneous environment)
      OCELKA, Jaromír. Přenosy dat v heterogenním prostředí (Data transfer in heterogeneous environment). In Tvorba softwaru 2004. první. Ostrava: Tanger s.r.o Ostrava, MARQ, 2004, p. 202-207. ISBN 80-85988-96-8.
      More: https://is.muni.cz/publication/555613/en
    19. Uniform Job Scheduling Model for Distributed Processing Environment with Distributed Storage
      HEJTMÁNEK, Lukáš and Petr HOLUB. Uniform Job Scheduling Model for Distributed Processing Environment with Distributed Storage. CESNET z.s.p.o., 2004, 13 pp. Technical report 9/2004.
      More: https://is.muni.cz/publication/561959/en
    20. User Empowered Virtual Multicast for Multimedia Communication
      HLADKÁ, Eva, Petr HOLUB and Jiří DENEMARK. User Empowered Virtual Multicast for Multimedia Communication. In Proccedings of 3rd International Conference on Networking. Colmar, France: University of Haute Alsace, 2004, 6 pp. ISBN 0-86341-325-0.
      More: https://is.muni.cz/publication/491740/en
    21. User-Empowered Programmable Network Support for Collaborative Environment
      HLADKÁ, Eva, Petr HOLUB and Jiří DENEMARK. User-Empowered Programmable Network Support for Collaborative Environment. In Universal Multiservice Networks: Third European Conference, ECUMN 2004, Porto, Portugal, October 25-27, 2004. Proceedings. Heidelberg, Němeko: Lecture Notes in Computer Science 3262, Springer-Verlag Heidelberg, 2004, p. 367-376. ISBN 3-540-23551-5.
      More: https://is.muni.cz/publication/558937/en
    22. Uživatelský portál METACentra
      KUBA, Martin. Uživatelský portál METACentra. CESNET z.s.p.o, 2004. technická zpráva.
      More: https://is.muni.cz/publication/599045/en

    2003

    1. Aktuální oblasti výzkumu digitálních knihoven (Current Research Areas for Digital Libraries)
      BARTOŠEK, Miroslav. Aktuální oblasti výzkumu digitálních knihoven (Current Research Areas for Digital Libraries). In INFOS 2003. 32 medzinárodné informatické sympózium. Bratislava: Spolok slovenských knihovníkov, 2003, p. 84-90. ISBN 80-85165-86-4.
      More: https://is.muni.cz/publication/485899/en
    2. Clearing Masarykovy univerzity
      BURIANOVÁ, Lucie and Ivan JEDLIČKA. Clearing Masarykovy univerzity. Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. 2003, XIV, No 1, p. 3-6. ISSN 1212-0901.
      More: https://is.muni.cz/publication/490492/en
    3. IBP Deployment Tests and Integration with DiDaS Project
      HEJTMÁNEK, Lukáš and Petr HOLUB. IBP Deployment Tests and Integration with DiDaS Project. CESNET z.s.p.o., 2003, 22 pp. Technical report 20/2003.
      More: https://is.muni.cz/publication/491399/en
    4. Internet a Digitálne knižnice (Internet and Digital Libraries)
      BARTOŠEK, Miroslav. Internet a Digitálne knižnice (Internet and Digital Libraries). ITlib. Informačné technológie a knižnice. Bratislava: Centrum VTI SR, 2003, vol. 2003, No 2, p. 39-41. ISSN 1335-793X.
      More: https://is.muni.cz/publication/487889/en
    5. Jak přednášet na dálku aneb virtuální přednáška v Koreji (Telepresentation - vitrual lecture in Korea)
      MATYSKA, Luděk, Petr HOLUB and Eva HLADKÁ. Jak přednášet na dálku aneb virtuální přednáška v Koreji (Telepresentation - vitrual lecture in Korea). Brno: Masarykova univerzita v Brně, 2003, 3 pp. Zpravodaj ÚVT MU, 14, 1, 6-8. ISSN 1212-0901.
      More: https://is.muni.cz/publication/489342/en
    6. Jak se dělá divadlo na FI MU
      HLADKÁ, Eva and Petr HOLUB. Jak se dělá divadlo na FI MU. Brno: Masarykova univerzita v Brně, 2003, 4 pp. Zpravodaj ÚVT MU, 13, 5, 17-20.
      More: https://is.muni.cz/publication/487452/en
    7. Komunikace s technologií AccesGrid Point (Communication by the AccessGrid Point technology)
      HLADKÁ, Eva, Petr HOLUB and Tomáš REBOK. Komunikace s technologií AccesGrid Point (Communication by the AccessGrid Point technology). In Širokopásmové sítě a jejich aplikace. Olomouc: CVT UP Olomouc, 2003, p. 65-69. ISBN 80-244-0642-X.
      More: https://is.muni.cz/publication/487213/en
    8. MEDIMED-Regional Centre for Archiving and Interhospital Exchange of Medicine Multimedia Data
      DOSTÁL, Otto, Michal JAVORNÍK, Karel SLAVÍČEK and Martin PETRENKO. MEDIMED-Regional Centre for Archiving and Interhospital Exchange of Medicine Multimedia Data. In Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology. Scottsdale, Arizona, USA: International Association of Science and Technology for Development- IASTED, 2003, p. 609-614. ISBN 0-88986-398-9.
      More: https://is.muni.cz/publication/491157/en
    9. Portable and Efficient Replacement for Web Services Messaging Protocol
      KRAJÍČEK, Ondřej and Petr HOLUB. Portable and Efficient Replacement for Web Services Messaging Protocol. Budapest, Hungary: Microsoft Research, 2003. MSR Academic Conference.
      More: https://is.muni.cz/publication/490103/en
    10. RAP - Reflector Administration Protocol
      DENEMARK, Jiří, Petr HOLUB and Eva HLADKÁ. RAP - Reflector Administration Protocol. CESNET z.s.p.o., 2003, 32 pp. Technical report 9/2003.
      More: https://is.muni.cz/publication/489929/en
    11. Synchronizing RTP Packet Reflector
      REBOK, Tomáš and Petr HOLUB. Synchronizing RTP Packet Reflector. CESNET z.s.p.o., 2003, 5 pp. Technical report 7/2003.
      More: https://is.muni.cz/publication/490229/en
    12. Výzkum digitálních knihoven na MU Brno (Digital Libraries Research at the Masaryk University in Brno)
      BARTOŠEK, Miroslav, Otto DOSTÁL, Jana KOHOUTKOVÁ and Petr PIŠTĚK. Výzkum digitálních knihoven na MU Brno (Digital Libraries Research at the Masaryk University in Brno). In INFOS 2003. 32.medzinárodné informatické sympózium. Bratislava: Spolok slovenských knihovníkov, 2003, p. 76-84. ISBN 80-85165-86-4.
      More: https://is.muni.cz/publication/485900/en
    13. Web Services
      KUBA, Martin. Web Services. Zpravodaj Ústavu výpočetní techniky Masarykovy univerzity v Brně. 2003, roč. 13, č. 3, p. 9-14. ISSN 1212-0901.
      More: https://is.muni.cz/publication/558523/en
    14. XML snadno a rychle
      KUBA, Martin. XML snadno a rychle. Zpravodaj Ústavu výpočetní techniky Masarykovy univerzity v Brně. 2003, roč. 13, č. 3, p. 4-9. ISSN 1212-0901.
      More: https://is.muni.cz/publication/558522/en

    2002

    1. Aleph: nový knihovní systém pro MU (Aleph: a new library management system for the Masaryk University)
      BARTOŠEK, Miroslav. Aleph: nový knihovní systém pro MU (Aleph: a new library management system for the Masaryk University). Zpravodaj ÚVT MU. Brno: Masarykova univerzita v Brně, 2002, roč. 13, No 2, p. 6-10. ISSN 1212-0901.
      More: https://is.muni.cz/publication/406993/en
    2. Developing a Dialog Library System
      KOPEČEK, Ivan and Miroslav BARTOŠEK. Developing a Dialog Library System. In Digital Libraries: People, Knowledge, and Technology. 5th International Conference on Asian Digital Libraries. ICADL 2002. Heidelberg: Springer-Verlag, 2002, p. 525. LNCS 2555. ISBN 3-540-00261-8.
      More: https://is.muni.cz/publication/407585/en
    3. Digitální knihovna fotografií MU (Digital Library of Photographs at the Masaryk University)
      BARTOŠEK, Miroslav and Petr KOVÁŘ. Digitální knihovna fotografií MU (Digital Library of Photographs at the Masaryk University). In RUFIS 2002: Role of Universities in the Future Information Society. Brno: VUT Brno, 2002, p. 2-11. ISBN 80-86510-40-9.
      More: https://is.muni.cz/publication/404960/en
    4. Disertace Masarykovy univerzity on-line (Masaryk University Dissertations Online)
      ŘEPIŠOVÁ, Zuzana, Jaroslav NEKUDA, Petr SOJKA and Hana VOCHOZKOVÁ. Disertace Masarykovy univerzity on-line (Masaryk University Dissertations Online). Brno: Masarykova univerzita, Ústav výpočetní techniky, 2002, 10 pp. výzkumné zprávy ÚVT.
      More: https://is.muni.cz/publication/554395/en
    5. Internetové vysílání workshopu Genetics after the Genome aneb "malý bobřík odvahy" (Genetics after the Genome Workshop - Experiences from Internet Streaming)
      HOLUB, Petr, Eva HLADKÁ and Michal KRSEK. Internetové vysílání workshopu Genetics after the Genome aneb "malý bobřík odvahy" (Genetics after the Genome Workshop - Experiences from Internet Streaming). Brno: Masarykova univerzita v Brně, 2002, 5 pp. Zpravodaj ÚVT MU, 12, 5, 10-14. ISSN 1212-0901.
      More: https://is.muni.cz/publication/404070/en
    6. IPsec interoperability tests with respect to deployment as "Last Mile" security solution
      HOLUB, Petr. IPsec interoperability tests with respect to deployment as "Last Mile" security solution. Praha: CESNET z.s.p.o., 2002. Technical report 2/2002.
      More: https://is.muni.cz/publication/484660/en
    7. Jak na streamované video? (How to do video streaming?)
      HOLUB, Petr. Jak na streamované video? (How to do video streaming?). Brno: Masarykova univerzita v Brně, 2002, 5 pp. Zpravodaj ÚVT MU, 12, 3, 9-13. ISSN 1212-0901.
      More: https://is.muni.cz/publication/404074/en
    8. Jemný úvod do (anti)spamové problematiky
      KOLAJA, Marcel and Miroslav BARTOŠEK. Jemný úvod do (anti)spamové problematiky. Zpravodaj ÚVT MU. Brno: Masarykova univerzita v Brně, 2002, roč. 12, No 5, p. 1-6. ISSN 1212-0901.
      More: https://is.muni.cz/publication/404700/en
    9. Jemný úvod do (anti)virové problematiky (A Gentle Introduction to (Anti)Viral Issues)
      HOLUB, Petr. Jemný úvod do (anti)virové problematiky (A Gentle Introduction to (Anti)Viral Issues). Brno: Masarykova univerzita v Brně, 2002, 6 pp. Zpravodaj ÚVT MU, 12, 4, 9-14. ISSN 1212-0901.
      More: https://is.muni.cz/publication/404073/en
    10. Komunikace s technologií AccessGrid Point (Communication via AccesGrid Point Technology)
      HLADKÁ, Eva and Petr HOLUB. Komunikace s technologií AccessGrid Point (Communication via AccesGrid Point Technology). Brno: Masarykova univerzita, 2002, 5 pp. Zpravodaj ÚVT MU, 13, 2, 16-20. ISSN 1212-0901.
      More: https://is.muni.cz/publication/407294/en
    11. Metropolitní archiv medicínských obrazových informací
      DOSTÁL, Otto and Michal JAVORNÍK. Metropolitní archiv medicínských obrazových informací. Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: MU v Brně, 2002, XII, No 5, p. 14-17. ISSN 1212-0901.
      More: https://is.muni.cz/publication/404349/en
    12. Streamovaná multimédia (Multimedia streaming)
      HOLUB, Petr. Streamovaná multimédia (Multimedia streaming). Brno: Masarykova univerzita v Brně, 2002, 3 pp. Zpravodaj ÚVT MU, 12, 3, 7-9. ISSN 1212-0901.
      More: https://is.muni.cz/publication/404075/en
    13. Teleconferencing Support for Small Groups
      HLADKÁ, Eva, Petr HOLUB and Jiří DENEMARK. Teleconferencing Support for Small Groups. In TERENA Networking Conference 2002. 2002, 6 pp.
      More: https://is.muni.cz/publication/404068/en
    14. Videokonferenční zrcadla (Videoconferencing mirrors)
      HLADKÁ, Eva and Petr HOLUB. Videokonferenční zrcadla (Videoconferencing mirrors). Praha: CESNET z.s.p.o., 2002, 1 pp. Datagram, 1, 3, 4-4.
      More: https://is.muni.cz/publication/404071/en
    15. XML Router Configuration Specifications and Architecture Document
      HOLUB, Petr. XML Router Configuration Specifications and Architecture Document. Praha: CESNET z.s.p.o., 2002.
      More: https://is.muni.cz/publication/484661/en
    16. Zrcadla v počítačové síti (Reflectors in coputer networks)
      HLADKÁ, Eva and Petr HOLUB. Zrcadla v počítačové síti (Reflectors in coputer networks). Brno: Masarykova univerzita v Brně, 2002, 4 pp. Zpravodaj ÚVT MU, 12, 7-10. ISSN 1212-0901.
      More: https://is.muni.cz/publication/404069/en

    2001

    1. Digitální knihovny (Digital Libraries)
      BARTOŠEK, Miroslav. Digitální knihovny (Digital Libraries). Mária Bieliková. In DATAKON 2001, Proceedings of the Annual Database Conference. Bratislava: Slovenská technická univerzita, 2001, p. 99-138. ISBN 80-227-1597-2.
      More: https://is.muni.cz/publication/370331/en
    2. DV Technology Overview And Video Camera Tests
      HOLUB, Petr. DV Technology Overview And Video Camera Tests. CESNET z.s.p.o., 2001, 12 pp. Technical report 12/2001.
      More: https://is.muni.cz/publication/492244/en
    3. Elektronické informační zdroje pro vědu, výzkum a výuku v České republice (Digital Information Resources for Research, Develompment, and Education in the Czech Republic)
      BARTOŠEK, Miroslav. Elektronické informační zdroje pro vědu, výzkum a výuku v České republice (Digital Information Resources for Research, Develompment, and Education in the Czech Republic). In INFOS 2001 : 31. medzinárodné informatické sympózium. Bratislava: Spolok slovenských knihovníkov, 2001, p. 222-235. ISBN 80-85165-84-8.
      More: https://is.muni.cz/publication/360011/en
    4. Encryption implementation for WBD
      HOLUB, Petr. Encryption implementation for WBD. CESNET z.s.p.o., 2001, 3 pp. Technical report 8/2001.
      More: https://is.muni.cz/publication/492242/en
    5. PictureTel 550 H.323 Videoconferencing Tool in Windows 2000 Environment - Installation and Experiences
      HOLUB, Petr. PictureTel 550 H.323 Videoconferencing Tool in Windows 2000 Environment - Installation and Experiences. CESNET z.s.p.o., 2001, 13 pp. Technical report 9/2001.
      More: https://is.muni.cz/publication/492243/en
    6. Přehled elektronických informačních zdrojů pro vědu a výzkum (Electronic Information Resources for Research and Development: A Survey)
      BARTOŠEK, Miroslav and Miloslava FAITOVÁ. Přehled elektronických informačních zdrojů pro vědu a výzkum (Electronic Information Resources for Research and Development: A Survey). Editoři: František Ježek, Miloš Brejcha. In RUFIS 2001: Role of Universities in the Future Information Society. Plzeň: Západočeská univerzita v Plzni, 2001, p. 7-20. ISBN 80-7082-783-1.
      More: https://is.muni.cz/publication/369352/en
    7. Systémový pohled na výběr knihovního systému nové generace a "finský model" (System view on a new generation library management system selection and a Finnish approach)
      BARTOŠEK, Miroslav. Systémový pohled na výběr knihovního systému nové generace a "finský model" (System view on a new generation library management system selection and a Finnish approach). In Automatizace knihovnických procesů - 8. Praha: ČVUT - Výpočetní a informační centrum, 2001, p. 39-46. ISBN 80-01-02-366-4.
      More: https://is.muni.cz/publication/361671/en

    2000

    1. Akademická konsorcia na elektronické informační zdroje: historie a přehled současných aktivit (Academic consortia for electronic information resources: a history and overview of current activities)
      BARTOŠEK, Miroslav and Jaroslav ŠILHÁNEK. Akademická konsorcia na elektronické informační zdroje: historie a přehled současných aktivit (Academic consortia for electronic information resources: a history and overview of current activities). In Knihovny současnosti 2000. Brno: Sdružení knihoven ČR, 2000, p. 184-195. ISBN 80-86249-09-3.
      More: https://is.muni.cz/publication/333631/en
    2. Blýskání na časy centrální evidenci osob na MU (Lightning on the time to the Central register of persons at MU)
      JEDLIČKA, Ivan. Blýskání na časy centrální evidenci osob na MU (Lightning on the time to the Central register of persons at MU). Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: Masarykova univerzita, 2000, vol. 11, No 1, p. 9-12. ISSN 1212-0901.
      More: https://is.muni.cz/publication/342151/en
    3. Conformational Analysis as a Testbed for MetaComputer
      MATYSKA, Luděk and Miroslav RUDA. Conformational Analysis as a Testbed for MetaComputer. In ISThmus 2000 - Research and Development for the Information Society. Poznan: Politechnika Poznanska, 2000, p. 279-564. ISBN 83-913639-0-2.
      More: https://is.muni.cz/publication/343626/en
    4. EIFL Direct
      VOCHOZKOVÁ, Hana. EIFL Direct. Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: Masarykova univerzita, 2000, roč. 10, č. 4, p. 9-12. ISSN 1212-0901.
      More: https://is.muni.cz/publication/324694/en
    5. Elektronické dizertace on-line (Electronic Dissertations on-line)
      ŘEPIŠOVÁ, Zuzana and Hana VOCHOZKOVÁ. Elektronické dizertace on-line (Electronic Dissertations on-line). In Mezinárodní konference RUFIS 2000 : sborník příspěvků : Vysoké učení technické v Brně, 5.-6. září 2000. Brno: Aps Brno, 2000, p. 105-110. ISBN 80-214-1671-8.
      More: https://is.muni.cz/publication/329031/en
    6. Elektronické informační zdroje na MU
      BARTOŠEK, Miroslav. Elektronické informační zdroje na MU. Univerzitní noviny, List Masarykovy univerzity a Nadace Universitas Masarykiana. Brno: Nadace MU, 2000, roč. 7, No 11, p. 34-36. ISSN 1211-6866.
      More: https://is.muni.cz/publication/345874/en
    7. Konsorciální elektronické informační zdroje v akademické sféře ČR (Consortia electronic information resources in Czech academic sphere)
      BARTOŠEK, Miroslav and Jaroslav ŠILHÁNEK. Konsorciální elektronické informační zdroje v akademické sféře ČR (Consortia electronic information resources in Czech academic sphere). In RUFIS 2000, Role of Universities in the Future Information Society. Brno: VUT Brno, 2000, p. 3-14. ISBN 80-214-1671-8.
      More: https://is.muni.cz/publication/329951/en
    8. Počítačová studovna MU zahájila provoz
      BARTOŠEK, Miroslav, Petr PIŠTĚK and Václav RAČANSKÝ. Počítačová studovna MU zahájila provoz. Univerzitní noviny, List Masarykovy univerzity a Nadace Universitas Masarykiana. Brno: Nadace MU, 2000, roč. 7, No 11, p. 36-38. ISSN 1211-6866.
      More: https://is.muni.cz/publication/345876/en
    9. Pravidla AACR. Nakladatelské údaje (Anglo-American Cataloguing Rules. Publication, distribution, etc. area)
      HÁJKOVÁ, Zuzana and Hana VOCHOZKOVÁ. Pravidla AACR. Nakladatelské údaje (Anglo-American Cataloguing Rules. Publication, distribution, etc. area). Čtenář : měsíčník pro knihovny. Praha: Academia, 2000, roč. 52, č. 6, p. 183-185. ISSN 0011-2321.
      More: https://is.muni.cz/publication/324699/en
    10. Pravidla AACR. Poznámky (Anglo-American Cataloguing Rules. Note area)
      HÁJKOVÁ, Zuzana and Hana VOCHOZKOVÁ. Pravidla AACR. Poznámky (Anglo-American Cataloguing Rules. Note area). Čtenář : měsíčník pro knihovny. Praha: Academia, 2000, roč. 52, č. 10, p. 290-294. ISSN 0011-2321.
      More: https://is.muni.cz/publication/337411/en
    11. Pravidla AACR. Údaje fyzického popisu (Anglo-American Cataloguing Rules. Physical description area)
      HÁJKOVÁ, Zuzana and Hana VOCHOZKOVÁ. Pravidla AACR. Údaje fyzického popisu (Anglo-American Cataloguing Rules. Physical description area). Čtenář : měsíčník pro knihovny. Praha: Academia, 2000, roč. 52, č. 7/8, p. 214-216. ISSN 0011-2321.
      More: https://is.muni.cz/publication/326311/en
    12. Pravidla AACR. Údaje o edici (Anglo-American Cataloguing Rules. Series area)
      HÁJKOVÁ, Zuzana and Hana VOCHOZKOVÁ. Pravidla AACR. Údaje o edici (Anglo-American Cataloguing Rules. Series area). Čtenář : měsíčník pro knihovny. Praha: Academia, 2000, roč. 52, č. 9, p. 258-259. ISSN 0011-2321.
      More: https://is.muni.cz/publication/333091/en
    13. Pravidla AACR. Údaje o názvu a odpovědnosti - název (Anglo-American Cataloguing Rules. Title and statement of responsibility area - title)
      HÁJKOVÁ, Zuzana and Hana VOCHOZKOVÁ. Pravidla AACR. Údaje o názvu a odpovědnosti - název (Anglo-American Cataloguing Rules. Title and statement of responsibility area - title). Čtenář : měsíčník pro knihovny. Praha: Academia, 2000, roč. 52, č. 3, p. 86-88. ISSN 0011-2321.
      More: https://is.muni.cz/publication/324696/en
    14. Pravidla AACR. Údaje o názvu a odpovědnosti - odpovědnost (Anglo-American Cataloguing Rules. Title and statement of responsibility area - responsibility)
      HÁJKOVÁ, Zuzana and Hana VOCHOZKOVÁ. Pravidla AACR. Údaje o názvu a odpovědnosti - odpovědnost (Anglo-American Cataloguing Rules. Title and statement of responsibility area - responsibility). Čtenář : měsíčník pro knihovny. Praha: Academia, 2000, roč. 52, č. 4, p. 118-121. ISSN 0011-2321.
      More: https://is.muni.cz/publication/324697/en
    15. Pravidla AACR. Údaje o standardním čísle a dostupnosti (Anglo-American Cataloguing Rules. Standard number and terms of availavility area)
      HÁJKOVÁ, Zuzana and Hana VOCHOZKOVÁ. Pravidla AACR. Údaje o standardním čísle a dostupnosti (Anglo-American Cataloguing Rules. Standard number and terms of availavility area). Čtenář : měsíčník pro knihovny. Praha: Academia, 2000, roč. 52, č. 11, p. 325-326. ISSN 0011-2321.
      More: https://is.muni.cz/publication/343305/en
    16. Pravidla AACR. Údaje o vydání (Anglo-American Cataloguing Rules. Edition area)
      HÁJKOVÁ, Zuzana and Hana VOCHOZKOVÁ. Pravidla AACR. Údaje o vydání (Anglo-American Cataloguing Rules. Edition area). Čtenář : měsíčník pro knihovny. Praha: Academia, 2000, roč. 52, č. 5, p. 153-154. ISSN 0011-2321.
      More: https://is.muni.cz/publication/324698/en
    17. Pravidla AACR. Úvod (Anglo-American Cataloguing Rules. Introduction)
      HÁJKOVÁ, Zuzana and Hana VOCHOZKOVÁ. Pravidla AACR. Úvod (Anglo-American Cataloguing Rules. Introduction). Čtenář : měsíčník pro knihovny. Praha: Academia, 2000, roč. 52, č. 2, p. 53-55. ISSN 0011-2321.
      More: https://is.muni.cz/publication/324695/en
    18. Security Infrastructure ot the MetaCenter
      MATYSKA, Luděk and Miroslav RUDA. Security Infrastructure ot the MetaCenter. In ISThmus 2000 - Research and Development for the Information Society. Poznan: Politechnika Poznanska, 2000, p. 419-844. ISBN 83-913639-0-2.
      More: https://is.muni.cz/publication/343627/en

    1999

    1. ATpar : heterogenní virtuální www-katalog Aleph-Tinlib (ATpar : heterogenous virtual www-catalogue Aleph-Tinlib)
      BARTOŠEK, Miroslav. ATpar : heterogenní virtuální www-katalog Aleph-Tinlib (ATpar : heterogenous virtual www-catalogue Aleph-Tinlib). Knihovní obzor. Olomouc: Státní vědecká knihovna Olomouc, 1999, roč. 7, No 3, p. 8-18. ISSN 1210-5791.
      More: https://is.muni.cz/publication/244251/en
    2. ATpar : heterogenní virtuální www-katalog Aleph-Tinlib. (ATpar : heterogenous virtual www-catalogue Aleph-Tinlib.)
      BARTOŠEK, Miroslav. ATpar : heterogenní virtuální www-katalog Aleph-Tinlib. (ATpar : heterogenous virtual www-catalogue Aleph-Tinlib.). In CASLIN'99 : Union Catalogues: their organization and services. Praha: Národní knihovna ČR, 1999, p. 21-27. ISBN 80-7050-340-8.
      More: https://is.muni.cz/publication/243972/en
    3. JSTOR - šance i pro humanitní výzkum na MU?
      BARTOŠEK, Miroslav. JSTOR - šance i pro humanitní výzkum na MU? Zpravodaj ÚVT MU. Brno: Masarykova Univerzita, 1999, vol. 9, No 5, p. 4-8. ISSN 1212-0901.
      More: https://is.muni.cz/publication/244671/en
    4. Navštívili jsme na webu: Citování dokumentů
      NOVÁKOVÁ, Hana. Navštívili jsme na webu: Citování dokumentů. Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: Masarykova univerzita, 1999, roč. 9, č. 3, p. 18-20. ISSN 1212-0901.
      More: https://is.muni.cz/publication/324693/en
    5. SOFSEM '99 : Theory and Practice of Informatics : 26th Conference on Current Trends in Theory and Practice of Informatics : Milovy, Czech Republic, November/December 1999 : Proceedings
      SOFSEM '99 : Theory and Practice of Informatics : 26th Conference on Current Trends in Theory and Practice of Informatics : Milovy, Czech Republic, November/December 1999 : Proceedings. Edited by Jan Pavelka - Gerard Tel - Miroslav Bartošek. Berlin: Springer, 1999, 498 pp. Lecture Notes in Computer Science; 1725. ISBN 3-540-66694-X.
      More: https://is.muni.cz/publication/243911/en
    6. Vyhledávání v Internetu a DUBLIN CORE
      BARTOŠEK, Miroslav. Vyhledávání v Internetu a DUBLIN CORE. Zpravodaj ÚVT MU. Brno: Masarykova Univerzita, 1999, vol. 9, No 4, p. 1-4. ISSN 1212-0901.
      More: https://is.muni.cz/publication/244651/en

    1998

    1. AltaVista - translation service
      NOVÁKOVÁ, Hana. AltaVista - translation service. Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: Masarykova univerzita, 1998, roč. 8, č. 4, p. 14-15. ISSN 1212-0901.
      More: https://is.muni.cz/publication/324691/en
    2. Automatizace knihoven MU - ohlédnutí po pěti letech (Library automation at Masaryk University in Brno - five years' retrospection)
      BARTOŠEK, Miroslav. Automatizace knihoven MU - ohlédnutí po pěti letech (Library automation at Masaryk University in Brno - five years' retrospection). Duha. Brno: Moravská zemská knihovna, 1998, vol. 1998, No 2, p. 2-7. ISSN 0862-1985.
      More: https://is.muni.cz/publication/244271/en
    3. Schizoaromatický Hexaflurocyklotrifosfazen (Schizoaromatic Hexafluorocyclotriphosphazene)
      HOLUB, Petr and Pavel KUBÁČEK. Schizoaromatický Hexaflurocyklotrifosfazen (Schizoaromatic Hexafluorocyclotriphosphazene). In Pokroky v anorganické chemii. 1998.
      More: https://is.muni.cz/publication/554628/en
    4. Systém JASON
      NOVÁKOVÁ, Hana. Systém JASON. Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: Masarykova univerzita, 1998, roč. 9, č. 2, p. 13-14. ISSN 1212-0901.
      More: https://is.muni.cz/publication/324692/en

    1997

    1. Integrovaná virtuální knihovna Státní technické knihovny v Praze (INV[I]K STK)
      Integrovaná virtuální knihovna Státní technické knihovny v Praze (INV[I]K STK). Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: Masarykova univerzita, 1997, roč. 8, č. 2, p. 1-3. ISSN 1212-0901.
      More: https://is.muni.cz/publication/324832/en
    2. Meta Computing - New Direction in High Performance Computing
      MATYSKA, Luděk and Miroslav RUDA. Meta Computing - New Direction in High Performance Computing. In ITAB´97. Praha: IEEE EMB, 1997, p. 106. ISBN 0-7803-4318-2.
      More: https://is.muni.cz/publication/190168/en
    3. Novinky v oblasti kooperace knihoven v rámci projektu MOLIN : Download záznamů & Virtuální souborný katalog (News in library co-operation within the MOLIN project : Record Download & Virtual Union Catalogue)
      BARTOŠEK, Miroslav. Novinky v oblasti kooperace knihoven v rámci projektu MOLIN : Download záznamů & Virtuální souborný katalog (News in library co-operation within the MOLIN project : Record Download & Virtual Union Catalogue). Knihovní obzor. Olomouc: Státní vědecká knihovna Olomouc, 1997, vol. 5, No 4, p. 4-11. ISSN 1210-5791.
      More: https://is.muni.cz/publication/244311/en
    4. "Souborný" katalog Masarykovy univerzity v Brně (Union catalogue of Masaryk University Brno)
      BARTOŠEK, Miroslav and Hana NOVÁKOVÁ. "Souborný" katalog Masarykovy univerzity v Brně (Union catalogue of Masaryk University Brno). Duha : informace o knihách a knihovnách z Moravy. Brno: Moravská zemská knihovna, 1997, roč. 11, č. 2, p. 8-11. ISSN 0862-1985.
      More: https://is.muni.cz/publication/324671/en
    5. Souborný katalog Masarykovy univerzity v Brně (Union Catalogue at Masaryk University in Brno)
      BARTOŠEK, Miroslav. Souborný katalog Masarykovy univerzity v Brně (Union Catalogue at Masaryk University in Brno). Duha. Brno: Moravská zemská knihovna, 1997, vol. 1997, No 2, p. 8-11. ISSN 0862-1985.
      More: https://is.muni.cz/publication/244291/en

    1996

    1. CD-ROM server Masarykovy univerzity
      BARTOŠEK, Miroslav. CD-ROM server Masarykovy univerzity. Zpravodaj ÚVT MU. Brno: Masarykova Univerzita, 1996, vol. 7, No 2, p. 3-5. ISSN 1212-0901.
      More: https://is.muni.cz/publication/244691/en

    1995

    1. Knihovny MU v Internetu (Libraries of the Masaryk University available on the Internet)
      BARTOŠEK, Miroslav. Knihovny MU v Internetu (Libraries of the Masaryk University available on the Internet). Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: Masarykova univerzita, 1995, V, No 4, p. 8-10, 2 pp. ISSN 1212-0901.
      More: https://is.muni.cz/publication/556855/en

    1994

    1. Korporace (a konference) : instrukce k tvorbě a zápisu údajů v záznamech jmenných autorit : doplněk k manuálu Katalog systému TINLIB
      BRATKOVÁ, Eva and Hana NOVÁKOVÁ. Korporace (a konference) : instrukce k tvorbě a zápisu údajů v záznamech jmenných autorit : doplněk k manuálu Katalog systému TINLIB. Praha: Univerzita Karlova, Ústav výpočetní techniky, 1994, 60 s.
      More: https://is.muni.cz/publication/324971/en
    2. Některé zkušenosti se systémem TINLIB v prostředí českých vysokých škol
      BARTOŠEK, Miroslav and Eva BRATKOVÁ. Některé zkušenosti se systémem TINLIB v prostředí českých vysokých škol. In sborník Celostátní porady knihovníků vysokých škol. Praha, 1994, p. 19-44, 25 pp.
      More: https://is.muni.cz/publication/556852/en

    1992

    1. Automatizace knihoven MU (Library Automation at the MU Brno)
      BARTOŠEK, Miroslav and Jana KOHOUTKOVÁ. Automatizace knihoven MU (Library Automation at the MU Brno). Zpravodaj ÚVT MU : bulletin pro zájemce o výpočetní techniku na Masarykově univerzitě. Brno: Masarykova univerzita, 1992, III, 1-3, 9 pp. ISSN 1212-0901.
      More: https://is.muni.cz/publication/556851/en
    2. Automatizace knihoven na MU v Brně (Library Automation at the Masaryk University in Brno)
      BARTOŠEK, Miroslav, Jana KOHOUTKOVÁ and Karel PALA. Automatizace knihoven na MU v Brně (Library Automation at the Masaryk University in Brno). Duha : informace o knihách a knihovnách z Moravy. Brno: Moravská zemská knihovna, 1992, vol. 3, p. 3-6. ISSN 0862-1985.
      More: https://is.muni.cz/publication/556850/en
    3. Co byste měli vědět, než začnete pracovat s osobním počítačem
      BARTOŠEK, Miroslav and Aleš ZLÁMAL. Co byste měli vědět, než začnete pracovat s osobním počítačem. Vyd. 1. Brno: Masarykova univerzita, 1992, 53 s. ISBN 80-210-0441-.
      More: https://is.muni.cz/publication/1726/en
    4. Miniprůvodce systémem FoxBASE/dBASE (A Miniguide to Database Systems FoxBASE/dBASE)
      BARTOŠEK, Miroslav. Miniprůvodce systémem FoxBASE/dBASE (A Miniguide to Database Systems FoxBASE/dBASE). Brno: MU Brno, Ekonomicko-správní fakulta, 1992, 77 pp. ISBN 80-210-0433-9.
      More: https://is.muni.cz/publication/556848/en

    1990

    1. Synthesis of Synchronizers
      BARTOŠEK, Miroslav. Synthesis of Synchronizers. Scripta Facultatis Scientiarum Naturalium Universitatis Purkynianae Brunensis - Mathematica. Brno: Přírodovědecká fakulta Univerzity J.E. Purkyně, 1990, vol. 20, No 4, p. 155-168.
      More: https://is.muni.cz/publication/556846/en

    1989

    1. Základy systémového programování. Operační systém RSX-11M (Foundation of System Programming. RSX-11M Operating System)
      BARTOŠEK, Miroslav. Základy systémového programování. Operační systém RSX-11M (Foundation of System Programming. RSX-11M Operating System). Brno: Univerzita J.E.Purkyně, 1989, 200 pp. ISBN 80-210-024-4.
      More: https://is.muni.cz/publication/556847/en

    1988

    1. Kancelářský datový systém SIRAEL (SIRAEL office information system)
      FRANEK, Jiří and Jiří ZLATUŠKA. Kancelářský datový systém SIRAEL (SIRAEL office information system). Mechanizace a automatizace administrativy. 1988, vol. 1, p. 4.
      More: https://is.muni.cz/publication/556962/en
    2. Sirael - An Office Data System For Non-programmers
      FRANEK, Jiří. Sirael - An Office Data System For Non-programmers. In Proc. Summer School "Programming 88". Varna, Bulgaria, 1988.
      More: https://is.muni.cz/publication/556889/en

    1986

    1. SIRAEL - disketový systém pro práci s daty (SIRAEL - a diskette system for data manipulation)
      FRANEK, Jiří and Jiří ZLATUŠKA. SIRAEL - disketový systém pro práci s daty (SIRAEL - a diskette system for data manipulation). Informačné systémy. Bratislava: Alfa, 1986, vol. 2, p. 171-190.
      More: https://is.muni.cz/publication/556957/en

    1984

    1. SIRAEL - disketový systém pro práci s daty
      FRANEK, Jiří and Jiří ZLATUŠKA. SIRAEL - disketový systém pro práci s daty. In Proc. SOFSEM 84. 1984, p. 311-314.
      More: https://is.muni.cz/publication/557115/en
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