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TROJÁK, Matej, David ŠAFRÁNEK, Samuel PASTVA and Luboš BRIM. Rule-based Modelling of Biological Systems Using Regulated Rewriting. Biosystems. Elsevier, 2023, vol. 225, No 104843, p. 1-15. ISSN 0303-2647. Available from: https://dx.doi.org/10.1016/j.biosystems.2023.104843.
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KALLA, Erik, Hugo SEMRÁD, Miriama MATEÁŠOVÁ and Markéta MUNZAROVÁ. DFT Analysis of Diels-Alder Reactions for the Preparation of Forskolin Derivatives. In 18th Central European Symposium on Theoretical Chemistry, Balatonszárszó, Hungary. 2022.
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TROJÁK, Matej, David ŠAFRÁNEK, Branislav BROZMANN and Luboš BRIM. eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems. Online. In I. Petre, A. Păun. 20th International Conference on Computational Methods in Systems Biology. LNBI 13447. Neuveden: Springer, 2022, p. 302-309. ISBN 978-3-031-15033-3. Available from: https://dx.doi.org/10.1007/978-3-031-15034-0_17.
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BAKKER, Michael J., Arnošt MLÁDEK, Hugo SEMRÁD, Vojtěch ZAPLETAL and Jana PAVLÍKOVÁ PŘECECHTĚLOVÁ. Improving IDP theoretical chemical shift accuracy and efficiency through a combined MD/ADMA/DFT and machine learning approach. Physical Chemistry Chemical Physics. Royal Society of Chemistry, 2022, vol. 24, No 45, p. 27678-27692. ISSN 1463-9076. Available from: https://dx.doi.org/10.1039/D2CP01638A.
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TROJÁK, Matej, Helge HECHT, Martin ČECH and Elliott James PRICE. MSMetaEnhancer: A Python package for mass spectra metadata annotation. Journal of Open Source Software. 2022, vol. 7, No 79. Available from: https://dx.doi.org/10.21105/joss.04494.
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HECHT, Helge, Maksym SKORYK, Martin ČECH and Elliott James PRICE. RIAssigner: A package for gas chromatographic retention index calculation. Journal of Open Source Software. Open Journals, 2022, vol. 7, No 75, p. 1-4. ISSN 2475-9066. Available from: https://dx.doi.org/10.21105/joss.04337.
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SEMRÁD, Hugo, Ctibor MAZAL and Markéta MUNZAROVÁ. Free Radical Isomerizations in Acetylene Bromoboration Reaction. Molecules. MDPI, 2021, vol. 26, No 9, p. "2501", 15 pp. ISSN 1420-3049. Available from: https://dx.doi.org/10.3390/molecules26092501.
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