Publication Records

SAKAMOTO, Tomoaki, Shuka IKEMATSU, Hokuto NAKAYAMA, Terezie MALÍK MANDÁKOVÁ, Gholamreza GOHARI, Takuya SAKAMOTO, Gaojie LI, Hongwei HOU, Sachihiro MATSUNAGA, Martin LYSÁK and Seisuke KIMURA. A chromosome-level genome assembly for the amphibious plant Rorippa aquatica reveals its allotetraploid origin and mechanisms of heterophylly upon submergence. Communications Biology. BERLIN: Nature Research, 2024, vol. 7, No 1, p. 1-14. ISSN 2399-3642. Available from: https://dx.doi.org/10.1038/s42003-024-06088-7.

KHAN, Gulzar, Eike MAYLAND-QUELLHORST, Petr A KOSACHEV, Terezie MALÍK MANDÁKOVÁ, Martin LYSÁK and Dirk C ALBACH. Altai Mountains - cradle of hybrids and introgressants: A case study in Veronica subg. Pseudolysimachium (Plantaginaceae). Taxon. Bratislava: International Assoc. for Plant Taxonomy, 2024, vol. 73, No 2, p. 530-546. ISSN 0040-0262. Available from: https://dx.doi.org/10.1002/tax.13176.

HLAVATÁ, Kristýna, Eliška ZÁVESKÁ, Jana LEONG-ŠKORNIČKOVÁ, Milan POUCH, Axel Dalberg POULSEN, Otakar ŠÍDA, Bijay KHADKA, Terezie MALÍK MANDÁKOVÁ and Tomáš FÉR. Ancient hybridization and repetitive element proliferation in the evolutionary history of the monocot genus Amomum (Zingiberaceae). Frontiers in Plant Science. Lausanne: Frontiers Media SA, 2024, vol. 15, April 2024, p. 1324358-1324370. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2024.1324358.

BERINGER, Marc, Rimjhim Roy CHOUDHURY, Terezie MALÍK MANDÁKOVÁ, Sandra GRUNIG, Manuel PORETTI, Ilia J LEITCH, Martin LYSÁK and Christian PARISOD. Biased Retention of Environment-Responsive Genes Following Genome Fractionation. Molecular Biology and Evolution. OXFORD: Oxford University Press, 2024, vol. 41, No 8, p. 1-12. ISSN 0737-4038. Available from: https://dx.doi.org/10.1093/molbev/msae155.

PLAČKOVÁ, Klára, Petr BUREŠ, Martin LYSÁK and František ZEDEK. Centromere drive may propel the evolution of chromosome and genome size in plants. Annals of Botany. Oxford: Oxford University Press, 2024, 10 pp. ISSN 0305-7364. Available from: https://dx.doi.org/10.1093/aob/mcae149.

MABRY, Makenzie E, R Shawn ABRAHAMS, Ihsan A AL-SHEHBAZ, William J BAKER, Simon BARAK, Michael S BARKER, Russell L BARRETT, Aleksandra BERIC, Samik BHATTACHARYA, Sarah B CAREY, Gavin C CONANT, John G CONRAN, Maheshi DASSANAYAKE, Patrick P EDGER, Jocelyn C HALL, Yue HAO, Kasper P HENDRIKS, Julian M HIBBERD, Graham J KING, Daniel J KLIEBENSTEIN, Marcus A KOCH, Ilia J LEITCH, Frederic LENS, Martin LYSÁK, Alex C MCALVAY, Michael T W MCKIBBEN, Francesco MERCATI, Richard C MOORE, Klaus MUMMENHOFF, Daniel J MURPHY, Lachezar A NIKOLOV, Michael PISIAS, Eric H ROALSON, M Eric SCHRANZ, Shawn K THOMAS, Qingyi YU, Alan YOCCA, J Chris PIRES and Alex E HARKESS. Complementing model species with model clades. Plant Cell. Oxford University Press, 2024, vol. 2023, Jan, p. 1-22. ISSN 1040-4651. Available from: https://dx.doi.org/10.1093/plcell/koad260.

MUCINA, Ladislav, Klaus MUMMENHOFF, Pieter WINTER, van Niekerk ADRIAAN, Terezie MALÍK MANDÁKOVÁ and Martin LYSÁK. Drought and life-history strategies in Heliophila (Brassicaceae). New Phytologist. HOBOKEN: Blackwell Science, 2024, vol. 241, No 2, p. 532-534. ISSN 0028-646X. Available from: https://dx.doi.org/10.1111/nph.19352.

JEDLIČKOVÁ, Veronika, Marie ŠTEFKOVÁ, Terezie MALÍK MANDÁKOVÁ, Juan Francisco SANCHEZ LOPEZ, Marek SEDLÁČEK, Martin LYSÁK and Helene ROBERT BOISIVON. Injection-based hairy root induction and plant regeneration techniques in Brassicaceae. PLANT METHODS. LONDON: BIOMED CENTRAL LTD, 2024, vol. 20, No 1, p. 12, 1-12. ISSN 1746-4811. Available from: https://dx.doi.org/10.1186/s13007-024-01150-1.

BRAY, Sian M, Tuomas HAMALA, Min ZHOU, Silvia BUSOMS, Sina FISCHER, Stuart D DESJARDINS, Terezie MALÍK MANDÁKOVÁ, Chris MOORE, Thomas C MATHERS, Laura COWAN, Patrick MONNAHAN, Jordan KOCH, Eva M WOLF, Martin LYSÁK, Filip KOLAR, James D HIGGINS, Marcus A KOCH and Levi YANT. Kinetochore and ionomic adaptation to whole-genome duplication in Cochlearia shows evolutionary convergence in three autopolyploids. Cell Reports. CAMBRIDGE: Cell Press, 2024, vol. 43, No 8, p. 1-30. ISSN 2211-1247. Available from: https://dx.doi.org/10.1016/j.celrep.2024.114576.

MALÍK MANDÁKOVÁ, Terezie, Alice KRUMPOLCOVÁ, Roman MATYÁŠEK, Roman VOLKOV, Martin LYSÁK and Ales KOVARIK. Uniparental silencing of 5S rRNA genes in plant allopolyploids - insights from Cardamine (Brassicaceae). Plant Journal. Hoboken (USA): Wiley-Blackwell, 2024, vol. 119, No 3, p. 1313-1326. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.16850.

HAY, Nikolai M, Michael D WINDHAM, Terezie MALÍK MANDÁKOVÁ, Martin LYSÁK, Kasper P. HENDRIKS, Klaus MUMMENHOFF, Frederic LENS, Kathleen M. PRYER and C. Donovan BAILEY. A Hyb-Seq phylogeny of Boechera and related genera using a combination of Angiosperms353 and Brassicaceae-specific bait sets. American Journal of Botany. 1537-2197: Wiley, 2023, vol. 110, No 10, p. 1-20. ISSN 0002-9122. Available from: https://dx.doi.org/10.1002/ajb2.16226.

FARHAT, Perla, Sonja SILJAK-YAKOVLEV, Najat TAKVORIAN, Bou Dagher Kharrat MAGDA and Thierry ROBERT. Allopolyploidy: An Underestimated Driver in <i>Juniperus</i> Evolution. LIFE-BASEL. BASEL: MDPI, 2023, vol. 13, No 7, p. 1-17. ISSN 2075-1729. Available from: https://dx.doi.org/10.3390/life13071479.

GERMAN, Dmitry A, Kasper P HENDRIKS, Marcus A KOCH, Frederic LENS, Martin LYSÁK, C Donovan BAILEY, Klaus MUMMENHOFF and Ihsan A AL-SHEHBAZ. An updated classification of the Brassicaceae (Cruciferae). PHYTOKEYS. SOFIA: PENSOFT PUBL, 2023, vol. 2023, No 220, p. 127-144. ISSN 1314-2011. Available from: https://dx.doi.org/10.3897/phytokeys.220.97724.

WLODZIMIERZ, Piotr, Fernando A RABANAL, Robin BURNS, Matthew NAISH, Elias PRIMETIS, Alison SCOTT, Terezie MALÍK MANDÁKOVÁ, Nicola GORRINGE, Andrew J TOCK, Daniel HOLLAND, Katrin FRITSCHI, Anette HABRING, Christa LANZ, Christie PATEL, Theresa SCHLEGEL, Maximilian COLLENBERG, Miriam MIELKE, Magnus NORDBORG, Fabrice ROUX, Gautam SHIRSEKAR, Carlos ALONSO-BLANCO, Martin LYSÁK, Polina Y NOVIKOVA, Alexandros BOUSIOS, Detlef WEIGEL and Ian R HENDERSON. Cycles of satellite and transposon evolution in Arabidopsis centromeres. Nature. BERLIN: NATURE PORTFOLIO, 2023, vol. 618, No 7965, p. 1-34. ISSN 0028-0836. Available from: https://dx.doi.org/10.1038/s41586-023-06062-z.

BUREŠ, Petr, Melahat OZCAN, Jakub ŠMERDA, Ester MICHÁLKOVÁ, Lucie HOROVÁ, Klára PLAČKOVÁ, Petr ŠMARDA, Tammy L ELLIOTT, Pavel VESELÝ, Sebastian ĆATO, Maryam NOROUZI, Masoud SHEIDAI and František ZEDEK. Evolution of genome size and GC content in the tribe Carduinae (Asteraceae): rare descending dysploidy and polyploidy, limited environmental control and strong phylogenetic signal. Preslia. Czech Botanical Society, 2023, vol. 95, No 1, p. 185-213. ISSN 0032-7786. Available from: https://dx.doi.org/10.23855/PRESLIA.2023.185.

SOUČKOVÁ, Kamila, Matej JASÍK, Iva SOVADINOVÁ, Alexandr SEMBER, Eliška SYCHROVÁ, Anna KONIECZNA, Vojtěch BYSTRÝ, Iva DYKOVÁ, Radim BLAŽEK, Karolína LUKŠÍKOVÁ, Tomáš PAVLICA, Marek JANKÁSEK, Marie ALTMANOVÁ, Jakub ŽÁK, Adriána ZBONČÁKOVÁ, Martin REICHARD and Ondřej SLABÝ. From fish to cells: Establishment of continuous cell lines from embryos of annual killifish Nothobranchius furzeri and N. kadleci. Aquatic Toxicology. Elsevier, 2023, vol. 259, June, p. 1-16. ISSN 0166-445X. Available from: https://dx.doi.org/10.1016/j.aquatox.2023.106517.

HENDRIKS, Kasper P, Christiane KIEFER, Ihsan A AL-SHEHBAZ, C Donovan BAILEY, van Huysduynen Alex HOOFT, Lachezar A NIKOLOV, Lars NAUHEIMER, Alexandre R ZUNTINI, Dmitry A GERMAN, Andreas FRANZKE, Marcus A KOCH, Martin LYSÁK, Oscar TORO-NUNEZ, Baris OZUDOGRU, Vanessa R INVERNON, Nora WALDEN, Olivier MAURIN, Nikolai M HAY, Philip SHUSHKOV, Terezie MALÍK MANDÁKOVÁ, M Eric SCHRANZ, Mats THULIN, Michael D WINDHAM, Ivana RESETNIK, Stanislav SPANIEL, Elfy LY, J Chris PIRES, Alex HARKESS, Barbara NEUFFER, Robert VOGT, Christian BRAUCHLER, Heimo RAINER, Steven B JANSSENS, Michaela SCHMULL, Alan FORREST, Alessia GUGGISBERG, Sue ZMARZTY, Brendan J LEPSCHI, Neville SCARLETT, Fred W STAUFFER, Ines SCHONBERGER, Peter HEENAN, William J BAKER, Felix FOREST, Klaus MUMMENHOFF and Frederic LENS. Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset. Current Biology. CAMBRIDGE: CELL PRESS, 2023, vol. 33, No 19, p. 4052-4075. ISSN 0960-9822. Available from: https://dx.doi.org/10.1016/j.cub.2023.08.026.

SLOVÁK, Marek, Andrea MELICHÁRKOVÁ, Eliška GBÚROVÁ ŠTUBŇOVÁ, Jaromír KUČERA, Terezie MALÍK MANDÁKOVÁ, Jan SMYČKA, Sébastien LAVERGNE, Nicodemo Giuseppe PASSALACQUA, Peter VĎAČNÝ and Ovidiu PAUN. Pervasive Introgression During Rapid Diversification of the European Mountain Genus Soldanella (L.) (Primulaceae). Systematic Biology. Oxford University Press, 2023, vol. 72, No 3, p. 491-504. ISSN 1063-5157. Available from: https://dx.doi.org/10.1093/sysbio/syac071.

HLAVATÁ, Kristýna, Jana LEONG-ŠKORNIČKOVÁ, Eliška ZÁVESKÁ, Otakar ŠÍDA, Mark NEWMAN, Terezie MALÍK MANDÁKOVÁ, Martin LYSÁK, Karol MARHOLD and Tomáš FÉR. Phylogenomics and genome size evolution in Amomum s. s. (Zingiberaceae): Comparison of traditional and modern sequencing methods. Molecular Phylogenetics and Evolution. Elsevier, 2023, vol. 178, January, p. 1-14. ISSN 1055-7903. Available from: https://dx.doi.org/10.1016/j.ympev.2022.107666.

WANG, Yi, Guo-Qian HAO, Xinyi GUO, Dan ZHANG, Quan-Jun HU and Jian-Quan LIU. Phylogenomics and rapid diversification of the genus <i>Eutrema</i> on the Qinghai-Tibet Plateau and adjacent regions. Journal of Systematics and Evolution. Hoboken: Wiley, 2023, vol. 61, No 1, p. 11-21. ISSN 1674-4918. Available from: https://dx.doi.org/10.1111/jse.12828.

HRACHOVINOVÁ, Šárka, Pavla BOUCHALOVÁ, Petr LAPČÍK, David POTĚŠIL, Kateřina JURÁSKOVÁ, Vojtěch BYSTRÝ, Boris TICHÝ, Rudolf NENUTIL, Roman HRSTKA and Pavel BOUCHAL. Proteogenomic Classification of Triple-Negative Breast Cancer for Prognosis and Targeted Therapy. In Abstract Book of Doctoral conference 2023, Brno, CZ, 1.6.2023. 2023.

LUKAVSKY, Peter, Dalibor BLAŽEK, Vojtěch BYSTRÝ, Anna HELÁNOVÁ and Barbora TRUKSOVÁ. RNA Summer School 2023. 2023.

MAHADURA, Ashini Dias, Jakub ŠMERDA and Petr BUREŠ. Self-compatibility and level of heterozygosity in Cirsium. 2023. ISSN 1337-7043.

SHEN, Fei, Shixiao XU, Shen QI, Changwei BI and Martin LYSÁK. The allotetraploid horseradish genome provides insights into subgenome diversification and formation of critical traits. Nature Communications. Berlin: Nature Research, 2023, vol. 14, No 1, p. 1-19. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-023-39800-y.

FARHAT, Perla, Terezie MALÍK MANDÁKOVÁ, Jan DIVÍŠEK, Hiroshi KUDOH, Dmitry A. GERMAN and Martin LYSÁK. The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella. Frontiers in Plant Science. Lausanne (Switzerland): Frontiers Media SA, 2023, vol. 14, May, p. 1-17. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2023.1165140.

HUANG, Yile, Xinyi GUO, Kang ZHANG, Terezie MALÍK MANDÁKOVÁ, Feng CHENG and Martin LYSÁK. The meso-octoploid Heliophila variabilis genome sheds a new light on the impact of polyploidization and diploidization on the diversity of the Cape flora. Plant Journal. Wiley, 2023, vol. 116, No 2, p. 446-466. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.16383.

HUANG, Yile. The pathways of whole-genome duplications, diploidization, and descending dysploidy in the Biscutelleae (Brassicaceae). In ANANI, Hussein, Terezie MALÍK MANDÁKOVÁ, Xinyi GUO, Manuel PORETTI, Christian PARISOD and Martin LYSÁK. Polyploidy 2023. 2023.

VETEŠNÍKOVÁ ŠIMKOVÁ, Andrea, Kristína KŘÍŽOVÁ, Kristýna VOŘÍŠKOVÁ, Lukáš VETEŠNÍK, Vojtěch BYSTRÝ and Martin DEMKO. Transcriptome Profile Analyses of Head Kidney in Roach (Rutilus rutilus), Common Bream (Abramis brama) and Their Hybrids: Does Infection by Monogenean Parasites in Freshwater Fish Reveal Differences in Fish Vigour among Parental Species and Their Hybrids? Biology. Basel: MDPI, 2023, vol. 12, No 9, p. 1-29. ISSN 2079-7737. Available from: https://dx.doi.org/10.3390/biology12091199.

DRÁBOVÁ, Klára, Petra POKORNÁ, Hana PÁLOVÁ, Sabina ADAMCOVÁ, Vojtěch BYSTRÝ, Robin JUGAS, Ondřej SLABÝ and Jaroslav ŠTĚRBA. Výsledky celoexomového sekvenování germinální DNA u dětských pacientů se solidními tumory (Results of whole-exome sequencing of germline DNA in pediatric patients with solid tumors). In Kaprasův den 2023, Praha. 2023.

AGERBIRK, Niels, David I. PATTISON, Terezie MALÍK MANDÁKOVÁ, Martin LYSÁK, Sabine MONTAUT and Dan STAERK. Ancient Biosyntheses in an Oil Crop: Glucosinolate Profiles in Limnanthes alba and Its Relatives (Limnanthaceae, Brassicales). Journal of Agricultural and Food Chemistry. American Chemical Society, 2022, vol. 70, No 4, p. 1134-1147. ISSN 0021-8561. Available from: https://dx.doi.org/10.1021/acs.jafc.1c07299.

LYSÁK, Martin. Celebrating Mendel, McClintock, and Darlington: On end-to-end chromosome fusions and nested chromosome fusions. Plant Cell. ROCKVILLE: AMER SOC PLANT BIOLOGISTS, 2022, vol. 34, No 7, p. 2475-2491. ISSN 1040-4651. Available from: https://dx.doi.org/10.1093/plcell/koac116.

MAU, Martin, Terezie MALÍK MANDÁKOVÁ, Xingliang MA, Jana EBERSBACH, Lifang ZOU, Martin LYSÁK and Timothy F SHARBEL. Evolution of an Apomixis-Specific Allele Class in Supernumerary Chromatin of Apomictic Boechera. Frontiers in Plant Science. Lausanne: FRONTIERS MEDIA SA, 2022, vol. 13, JUN, p. 890038-890054. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2022.890038.

OLSEN, Luka N, Marie K BRANDRUD, Terezie MALÍK MANDÁKOVÁ, Martin LYSÁK, Charlotte S BJORA, Eduardo CIRES, Inger NORDAL and Anne K BRYSTING. Genetic structure and evolution of diploid Cochlearia in Iceland. Botanical Journal of the Linnean society. OXFORD: The Linnean Society of London, 2022, vol. 200, No 3, p. 395-415. ISSN 0024-4074. Available from: https://dx.doi.org/10.1093/botlinnean/boac018.

ZUO, Sheng, Xinyi GUO, Terezie MALÍK MANDÁKOVÁ, Mark EDGINTON, Ihsan A AL-SHEHBAZ and Martin LYSÁK. Genome diploidization associates with cladogenesis, trait disparity, and plastid gene evolution. PLANT PHYSIOLOGY. UNITED STATES: OXFORD UNIV PRESS INC, 2022, vol. 190, No 1, p. 403-420. ISSN 0032-0889. Available from: https://dx.doi.org/10.1093/plphys/kiac268.

ZUO, Sheng, Terezie MALÍK MANDÁKOVÁ, Michaela KUBOVÁ and Martin LYSÁK. Genomes, repeatomes and interphase chromosome organization in the meadowfoam family (Limnanthaceae, Brassicales). PLANT JOURNAL. ENGLAND: WILEY, 2022, vol. 110, No 5, p. 1462-1475. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.15750.

AL-SHEHBAZ, Ihsan A, Terezie MALÍK MANDÁKOVÁ, Klaus MUMMENHOFF and Martin LYSÁK. Heliophila verna (Brassicaceae), a new species from the Northern Cape of South Africa. Phytotaxa. ST LUKES, NEW ZEALAND: MAGNOLIA PRESS, 2022, vol. 555, No 2, p. 195-199. ISSN 1179-3155. Available from: https://dx.doi.org/10.11646/phytotaxa.555.2.8.

BROCK, Jordan R., Terezie MALÍK MANDÁKOVÁ, Michael MCKAIN, Martin LYSÁK and Kenneth M. OLSEN. Chloroplast phylogenomics in Camelina (Brassicaceae) reveals multiple origins of polyploid species and the maternal lineage of C. sativa. Horticulture Research. Oxford University Press, 2022, vol. 9, January, p. 1-13. ISSN 2662-6810. Available from: https://dx.doi.org/10.1093/hr/uhab050.

DOGAN, Mert, Terezie MALÍK MANDÁKOVÁ, Xinyi GUO and Martin LYSÁK. Idahoa and Subularia: Hidden polyploid origins of two enigmatic genera of crucifers. American Journal of Botany. St Louis: Botanical Soc Amer Inc, 2022, vol. 109, No 8, p. 1273-1289. ISSN 0002-9122. Available from: https://dx.doi.org/10.1002/ajb2.16042.

RANDALL, Ricardo S, Claire JOURDAIN, Anna NOWICKA, Kateina KADUCHOVA, Michaela KUBOVÁ, Mohammad A AYOUB, Veit SCHUBERT, Christophe TATOUT, Isabelle COLAS, K. KALYANIKRISHNA, Sophie DESSET, Sarah MERMET, Aurelia BOULAFLOUS-STEVENS, Ivona KUBALOVA, Terezie MALÍK MANDÁKOVÁ, Stefan HECKMANN, Martin LYSÁK, Martina PANATTA, Raffaella SANTORO, Daniel SCHUBERT, Ales PECINKA, Devin ROUTH and Celia BAROUX. Image analysis workflows to reveal the spatial organization of cell nuclei and chromosomes. Nucleus. 2022, vol. 13, No 1, p. 277-299. ISSN 1949-1034. Available from: https://dx.doi.org/10.1080/19491034.2022.2144013.

STEIER, Julia E, Terezie MALÍK MANDÁKOVÁ, Martin F WOJCIECHOWSKI and Kelly P STEELE. Insights into Species Delimitation of Selected Species in the Flowering Plant Genus Medicago section Buceras (Leguminosae). SYSTEMATIC BOTANY. UNITED STATES: AMER SOC PLANT TAXONOMISTS, 2022, vol. 47, No 2, p. 431-440. ISSN 0363-6445. Available from: https://dx.doi.org/10.1600/036364422X16512564801533.

BARTHA, Laszlo, Terezie MALÍK MANDÁKOVÁ, Ales KOVARIK, Paul-Adrian BULZU, Nathalie RODDE, Vaclav MAHELKA, Martin LYSÁK, Margaux-Alison FUSTIER, Jan SAFAR, Petr CAPAL, Lujza KERESZTES and Horia L BANCIU. Intact ribosomal DNA arrays of Potentilla origin detected in Erythronium nucleus suggest recent eudicot-to-monocot horizontal transfer. New Phytologist. Blackwell Science, 2022, vol. 235, No 3, p. 1246-1259. ISSN 0028-646X. Available from: https://dx.doi.org/10.1111/nph.18171.

WOS, Guillaume, Erwann ARC, Karl HUELBER, Veronika KONECNA, Adam KNOTEK, Doubravka POZAROVA, Clara BERTEL, Dominik KAPLENIG, Terezie MALÍK MANDÁKOVÁ, Gilbert NEUNER, Peter SCHOENSWETTER, Ilse KRANNER and Filip KOLAR. Parallel local adaptation to an alpine environment in Arabidopsis arenosa. Journal of Ecology. Wiley, 2022, vol. 110, No 10, p. 2448-2461. ISSN 0022-0477. Available from: https://dx.doi.org/10.1111/1365-2745.13961.

ZUO, Sheng. Recurrent duplications of kinetochore assembly factor KNL2 and its conserved function in plants. 2022.

ZUO, Sheng, Ramakrishna YADALA, Fen YANG, Paul TALBERT, Joerg FUCHS, Veit SCHUBERT, Ulkar AHMADLI, Twan RUTTEN, Ales PECINKA, Martin LYSÁK and Inna LERMONTOVA. Recurrent Plant-Specific Duplications of KNL2 and its Conserved Function as a Kinetochore Assembly Factor. Molecular Biology and Evolution. OXFORD: OXFORD UNIV PRESS, 2022, vol. 39, No 6, p. nestrankovano, 18 pp. ISSN 0737-4038. Available from: https://dx.doi.org/10.1093/molbev/msac123.

ERIKSSON, Mimmi C, Terezie MALÍK MANDÁKOVÁ, Jamie MCCANN, Eva M TEMSCH, Mark W CHASE, Mikael HEDREN, Hanna WEISS-SCHNEEWEISS and Ovidiu PAUN. Repeat Dynamics across Timescales: A Perspective from Sibling Allotetraploid Marsh Orchids (Dactylorhiza majalis s.l.). Molecular Biology and Evolution. Oxford: Oxford University Press, 2022, vol. 39, No 8, p. 1-15. ISSN 0737-4038. Available from: https://dx.doi.org/10.1093/molbev/msac167.

HUANG, Yile. Structure and evolution of the meso-octoploid genome of Heliophila variabilis (Brassicaceae). In MALÍK MANDÁKOVÁ, Terezie, Xinyi GUO and Martin LYSÁK. Congress of the European Society for Evolutionary Biology. 2022.

RU, Yalu, Terezie MALÍK MANDÁKOVÁ, Martin LYSÁK and Marcus A KOCH. The evolutionary history of Cardamine bulbifera shows a successful rapid postglacial Eurasian range expansion in the absence of sexual reproduction. Annals of Botany. Oxford: Oxford University Press, 2022, vol. 130, No 2, p. 245-263. ISSN 0305-7364. Available from: https://dx.doi.org/10.1093/aob/mcac088.

MALÍK MANDÁKOVÁ, Terezie and Martin LYSÁK. The identification of the missing maternal genome of the allohexaploid camelina (Camelina sativa). Plant Journal. Hoboken (USA): Wiley-Blackwell, 2022, vol. 112, No 3, p. 622-629. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.15931.

CHUMOVA, Zuzana, Alexander BELYAYEV, Terezie MALÍK MANDÁKOVÁ, Vojtech ZEISEK, Eva HODKOVA, Kristyna SEMBEROVA, Douglas EUSTON-BROWN and Pavel TRAVNICEK. The relationship between transposable elements and ecological niches in the Greater Cape Floristic Region: A study on the genus Pteronia (Asteraceae). Frontiers in Plant Science. Lausanne: FRONTIERS MEDIA SA, 2022, vol. 13, SEP, p. 982852-982869. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2022.982852.

LYSÁK, Martin, Mark EDGINTON, Sheng ZUO, Xinyi GUO, Terezie MALÍK MANDÁKOVÁ and Ihsan A AL-SHEHBAZ. Transfer of two Arabidella and two Cuphonotus species to the genus Lemphoria (Brassicaceae) and a description of the new species L. queenslandica. Phytotaxa. ST LUKES, NEW ZEALAND: MAGNOLIA PRESS, 2022, vol. 549, No 2, p. 235-240. ISSN 1179-3155. Available from: https://dx.doi.org/10.11646/phytotaxa.549.2.9.

WATSON, J.M., J. TRIEB, M. TROESTL, K. RENFREW, Terezie MALÍK MANDÁKOVÁ, Jaroslav FULNEČEK, D.E. SHIPPEN and Karel ŘÍHA. A hypomorphic allele of telomerase uncovers the minimal functional length of telomeres in Arabidopsis. Genetics. BETHESDA (USA): GENETICS SOCIETY AMERICA, 2021, vol. 219, No 2, p. „iyab126“, 9 pp. ISSN 0016-6731. Available from: https://dx.doi.org/10.1093/genetics/iyab126.

ŠLENKER, Marek, Adam KANTOR, Karol MARHOLD, Roswitha SCHMICKL, Terezie MALÍK MANDÁKOVÁ, Martin LYSÁK, Marián PERNÝ, Michaela CABOŇOVÁ, Marek SLOVÁK and Judita ZOZOMOVÁ-LIHOVÁ. Allele Sorting as a Novel Approach to Resolving the Origin of Allotetraploids Using Hyb-Seq Data: A Case Study of the Balkan Mountain Endemic Cardamine barbaraeoides. Frontiers in Plant Science. Lausanne: Frontiers Media SA, 2021, vol. 12, April, p. "659275", 22 pp. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2021.659275.

DOGAN, Mert, Milan POUCH, Terezie MANDÁKOVÁ, Petra HLOUŠKOVÁ, Xinyi GUO, P. WINTER, Z. CHUMOVA, A. VAN NIEKERK, K. MUMMENHOFF, I.A. AL-SHEHBAZ, L. MUCINA and Martin LYSÁK. Evolution of Tandem Repeats Is Mirroring Post-polyploid Cladogenesis in Heliophila (Brassicaceae). Frontiers in Plant Science. Lausanne (Switzerland): Frontiers Media SA, 2021, vol. 11, JAN, p. 607893-607910. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2020.607893.

MIAO, J.B., Perla FARHAT, W.T. WANG, M. RUHSAM, R. MILNE, H. YANG, S. TSO, J.L. LI, J.J. XU, L. OPGENOORTH, G. MIEHE and K.S. MAO. Evolutionary history of two rare endemic conifer species from the eastern Qinghai-Tibet Plateau. Annals of Botany. Oxford: Oxford University Press, 2021, vol. 128, No 7, p. 903-918. ISSN 0305-7364. Available from: https://dx.doi.org/10.1093/aob/mcab114.

HU, Q.J., Y.Z. MA, Terezie MALÍK MANDÁKOVÁ, S. SHI, C.L. CHEN, P.C. SUN, L. ZHANG, L.D. FENG, Y.D. ZHENG, X.Q. FENG, W.J. YANG, J.B. JIANG, T. LI, P.P. ZHOU, Q.S. YU, D.S. WAN, Martin LYSÁK, Z.X. XI, E. NEVO and J.Q. LIU. Genome evolution of the psammophyte Pugionium for desert adaptation and further speciation. Proceedings of the National Academy of Sciences of the United States of America. WASHINGTON: NATL ACAD SCIENCES, 2021, vol. 118, No 42, p. „e2025711118“, 7 pp. ISSN 0027-8424. Available from: https://dx.doi.org/10.1073/pnas.2025711118.

MALÍK MANDÁKOVÁ, Terezie, K. ASHBY, B.J. PRICE, M.D. WINDHAM, J.G. CARMAN and Martin LYSÁK. Genome structure and apomixis in Phoenicaulis (Brassicaceae; Boechereae). Journal of Systematics and Evolution. Hoboken: Wiley, 2021, vol. 59, No 1, p. 83-92. ISSN 1674-4918. Available from: https://dx.doi.org/10.1111/jse.12555.

BAYAT, Soheila, Martin LYSÁK and Terezie MALÍK MANDÁKOVÁ. Genome structure and evolution in the cruciferous tribe Thlaspideae (Brassicaceae). Plant Journal. Hoboken: Wiley-Blackwell, 2021, vol. 108, No 6, p. 1768-1785. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.15542.

BURNS, Robin, Terezie MALÍK MANDÁKOVÁ, Joanna GUNIS, Luz Mayela SOTO-JIMÉNEZ, Chang LIU, Martin LYSÁK, Polina Yu. NOVIKOVA and Magnus NORDBORG. Gradual evolution of allopolyploidy in Arabidopsis suecica. Nature Ecology & Evolution. Nature Research, 2021, vol. 5, No 10, p. 1367-1381, 29 pp. ISSN 2397-334X. Available from: https://dx.doi.org/10.1038/s41559-021-01525-w.

TRÁVNÍČEK, Pavel, Zuzana CHUMOVÁ, Eliška ZÁVESKÁ, Johana HANZLÍČKOVÁ, Lucie KUPKOVÁ, Jaromír KUČERA, Eliška GBÚROVÁ ŠTUBŇOVÁ, Ludmila REJLOVÁ, Terezie MALÍK MANDÁKOVÁ and Jan PONERT. Integrative Study of Genotypic and Phenotypic Diversity in the Eurasian Orchid Genus Neotinea. Frontiers in Plant Science. Lausanne: Frontiers Media SA, 2021, vol. 12, October, p. 1-18. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2021.734240.

GUO, Xinyi, Terezie MALÍK MANDÁKOVÁ, Karolína TRACHTOVÁ, B. OZUDOGRU, J.Q. LIU and Martin LYSÁK. Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe. Molecular Biology and Evolution. OXFORD: OXFORD UNIV PRESS, 2021, vol. 38, No 5, p. 1695-1714. ISSN 0737-4038. Available from: https://dx.doi.org/10.1093/molbev/msaa327.

BOHUTINSKA, M., M. ALSTON, P. MONNAHAN, Terezie MALÍK MANDÁKOVÁ, S. BRAY, P. PAAJANEN, F. KOLAR and L. YANT. Novelty and Convergence in Adaptation to Whole Genome Duplication. Molecular Biology and Evolution. OXFORD: OXFORD UNIV PRESS, 2021, vol. 38, No 9, p. 3910-3924. ISSN 0737-4038. Available from: https://dx.doi.org/10.1093/molbev/msab096.

SHAN, Wenbo, Michaela KUBOVÁ, Terezie MALÍK MANDÁKOVÁ and Martin LYSÁK. Nuclear organization in crucifer genomes: nucleolus-associated telomere clustering is not a universal interphase configuration in Brassicaceae. Plant Journal. Hoboken: Wiley-Blackwell, 2021, vol. 108, No 2, p. 528-540. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.15459.

CHUMOVA, Z., Terezie MALÍK MANDÁKOVÁ and P. TRAVNICEK. On the Origin of Tetraploid Vernal Grasses (Anthoxanthum) in Europe. Genes. BASEL: MDPI, 2021, vol. 12, No 7, p. 966-982. ISSN 2073-4425. Available from: https://dx.doi.org/10.3390/genes12070966.

WOS, G., M. BOHUTINSKA, J. NOSKOVA, Terezie MALÍK MANDÁKOVÁ and F. KOLAR. Parallelism in gene expression between foothill and alpine ecotypes in Arabidopsis arenosa. Plant Journal. Hoboken (USA): Wiley-Blackwell, 2021, vol. 105, No 5, p. 1211-1224. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.15105.

CHUMOVA, Z., E. ZAVESKA, P. HLOUSKOVA, J. PONERT, P.A. SCHMIDT, M. CERTNER, Terezie MALÍK MANDÁKOVÁ and P. TRAVNICEK. Repeat proliferation and partial endoreplication jointly shape the patterns of genome size evolution in orchids. Plant Journal. Hoboken (USA): Wiley-Blackwell, 2021, vol. 107, No 2, p. 511-524. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.15306.

HENDRIKS, K.P., Terezie MALÍK MANDÁKOVÁ, N.M. HAY, E. LY, A.H. VAN HUYSDUYNEN, R. TAMRAKAR, S.K. THOMAS, O. TORO-NUNEZ, J.C. PIRES, L.A. NIKOLOV, M.A. KOCH, M.D. WINDHAM, Martin LYSÁK, F. FOREST, K. MUMMENHOFF, W.J. BAKER, F. LENS and C.D. BAILEY. The best of both worlds: Combining lineage-specific and universal bait sets in target-enrichment hybridization reactions. Applications in Plant Sciences. HOBOKEN: Wiley, 2021, vol. 9, No 7, p. „e11438“, 12 pp. ISSN 2168-0450. Available from: https://dx.doi.org/10.1002/aps3.11438.

MAYROSE, I. and Martin LYSÁK. The Evolution of Chromosome Numbers: Mechanistic Models and Experimental Approaches. GENOME BIOLOGY AND EVOLUTION. Oxford University Press, 2021, vol. 13, No 2, p. 1-15. ISSN 1759-6653. Available from: https://dx.doi.org/10.1093/gbe/evaa220.

NAISH, M., M. ALONGE, P. WLODZIMIERZ, A.J. TOCK, B.W. ABRAMSON, A. SCHMUCKER, Terezie MALÍK MANDÁKOVÁ, B. JAMGE, C. LAMBING, P. KUO, N. YELINA, N. HARTWICK, K. COLT, L.M. SMITH, J. TON, T. KAKUTANI, R.A. MARTIENSSEN, K. SCHNEEBERGER, Martin LYSÁK, F. BERGER, A. BOUSIOS, T.P. MICHAEL, M.C. SCHATZ and I.R. HENDERSON. The genetic and epigenetic landscape of the Arabidopsis centromeres. Science. WASHINGTON: AMER ASSOC ADVANCEMENT SCIENCE, 2021, vol. 374, No 6569, p. "840"-"+", 88 pp. ISSN 0036-8075. Available from: https://dx.doi.org/10.1126/science.abi7489.

NOWAK, M.D., S. BIRKELAND, Terezie MANDÁKOVÁ, R.R. CHOUDHURY, Xinyi GUO, A.L.S. GUSTAFSSON, A. GIZAW, A. SCHRODER-NIELSEN, M. FRACASSETTI, A.K. BRYSTING, L. RIESEBERG, T. SLOTTE, C. PARISOD, Martin LYSÁK and C. BROCHMANN. The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic. Molecular Ecology Resources. HOBOKEN: WILEY, 2021, vol. 21, No 3, p. 661-676. ISSN 1755-098X. Available from: https://dx.doi.org/10.1111/1755-0998.13280.

YANG, W.J., L. ZHANG, Terezie MANDÁKOVÁ, L. HUANG, T. LI, J.B. JIANG, Y.Z. YANG, Martin LYSÁK, J.Q. LIU and Q.J. HU. The chromosome-level genome sequence and karyotypic evolution of Megadenia pygmaea (Brassicaceae). Molecular Ecology Resources. HOBOKEN: WILEY, 2021, vol. 21, No 3, p. 871-879. ISSN 1755-098X. Available from: https://dx.doi.org/10.1111/1755-0998.13291.

MANDÁKOVÁ, Terezie, Petra HLOUŠKOVÁ, M.A. KOCH and Martin LYSÁK. Genome Evolution in Arabideae Was Marked by Frequent Centromere Repositioning. The Plant Cell. American Society of Plant Physiologists, 2020, vol. 32, No 3, p. 650-665. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.19.00557.

WALDEN, N., T.P. NGUYEN, Terezie MANDÁKOVÁ, Martin LYSÁK and M.E. SCHRANZ. Genomic Blocks in Aethionema arabicum Support Arabideae as Next Diverging Clade in Brassicaceae. Frontiers in Plant Science. 2020, vol. 11, JUN, p. 719-727. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2020.00719.

PEŠKA, Vratislav, Martin MÁTL, Terezie MANDÁKOVÁ, Daniel VITALES, Petr FAJKUS, Jiří FAJKUS and Sonia GARCIA. Human-like telomeres in Zostera marina reveal a mode of transition from the plant to the human telomeric sequences. Journal of Experimental Botany. Oxford: Oxford University Press, 2020, vol. 71, No 19, p. 5786-5793. ISSN 0022-0957. Available from: https://dx.doi.org/10.1093/jxb/eraa293.

MANDÁKOVÁ, Terezie, Petra HLOUŠKOVÁ, M.D. WINDHAM, T. MITCHELL-OLDS, K. ASHBY, B. PRICE, J. CARMAN and Martin LYSÁK. Chromosomal Evolution and Apomixis in the Cruciferous Tribe Boechereae. Frontiers in Plant Science. Lausanne (Switzerland): Frontiers Media SA, 2020, vol. 11, MAY, p. 514-530. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2020.00514.

SHAN, Wenbo, Terezie MANDÁKOVÁ and Martin LYSÁK. Interphase Chromosome Organization in the Brassicaceae. In CEITEC PhD Conference. 2020.

MOOD, J.D., M. ARDIYANI, T. VELDKAMP, Terezie MANDÁKOVÁ, L.M. PRINCE and H.J. BOER. Nomenclatural changes in Zingiberaceae: Haplochorema is reduced to Boesenbergia. Gardens' Bulletin Singapore. 2020, vol. 72, No 1, p. 77-95. ISSN 0374-7859. Available from: https://dx.doi.org/10.26492/gbs72(1).2020-08.

PENNER, Shira, Barak DROR, Iris AVIEZER, Yamit BAR-LEV, Ayelet SALMAN-MINKOV, Terezie MANDÁKOVÁ, Petr ŠMARDA, Itay MAYROSE and Yuval SAPIR. Phenology and polyploidy in annual Brachypodium species (Poaceae) along the aridity gradient in Israel. Journal of Systematics and Evolution. Hoboken: Wiley, 2020, vol. 58, No 2, p. 189-199. ISSN 1674-4918. Available from: https://dx.doi.org/10.1111/jse.12489.

ZUO, Sheng. Recurrent duplications of the kinetochore assembly genes KNL2 and CENP-C in green plants. In Chromosome Biology Retreat 2020 (IPK, Germany). 2020.

MELICHARKOVA, Andrea, Marek SLENKER, Judita ZOZOMOVA-LIHOVA, Katarina SKOKANOVA, Barbora SINGLIAROVA, Tatiana KACMAROVA, Michaela CABONOVA, Matus KEMPA, GabrielaG SRAMKOVA, Terezie MANDÁKOVÁ, Martin LYSÁK, Marek SVITOK, Lenka MARTONFIOVA and Karol MARHOLD. So Closely Related and Yet So Different: Strong Contrasts Between the Evolutionary Histories of Species of the Cardamine pratensis Polyploid Complex in Central Europe. Frontiers in Plant Science. Lausanne (Switzerland): Frontiers Media SA, 2020, vol. 11, December 2020, p. 1-25. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2020.588856.

LE GOFF, S., B.N. KECELI, H. JERABKOVA, S. HECKMANN, T. RUTTEN, S. COTTERELL, V. SCHUBERT, E. ROITINGER, E. MECHTLER, F.C.H. FRANKLIN, C. TATOUT, A. HOUBEN, D. GEELEN, A.V. PROBST and Inna LERMONTOVA. The H3 histone chaperone NASP(SIM3) escorts CenH3 in Arabidopsis. Plant Journal. Hoboken (USA): Wiley-Blackwell, 2020, vol. 101, No 1, p. 71-86. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.14518.

PONERT, J., Z. CHUMOVA, Terezie MANDÁKOVÁ and P. TRAVNICEK. A new species of Acianthera (Pleurothallidinae, Orchidaceae) from Brazil. Phytotaxa. ST LUKES, NEW ZEALAND: MAGNOLIA PRESS, 2019, vol. 402, No 1, p. 29-37. ISSN 1179-3155. Available from: https://dx.doi.org/10.11646/phytotaxa.402.1.4.

ZELKOWSKI, M., K. ZELKOWSKA, U. CONRAD, S. HESSE, Inna LERMONTOVA, M. MARZEC, A. MEISTER, A. HOUBEN and V. SCHUBERT. Arabidopsis NSE4 Proteins Act in Somatic Nuclei and Meiosis to Ensure Plant Viability and Fertility. Frontiers in Plant Science. Lausanne (Switzerland): Frontiers Media SA, 2019, vol. 10, JUN, p. 774-793. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2019.00774.

BROCK, J.R., Terezie MANDÁKOVÁ, Martin LYSÁK and I.A. AL-SHEHBAZ. Camelina neglecta (Brassicaceae, Camelineae), a new diploid species from Europe. PHYTOKEYS. SOFIA: PENSOFT PUBL, 2019, JAN, No 115, p. 51-57. ISSN 1314-2011. Available from: https://dx.doi.org/10.3897/phytokeys.115.31704.

PEŠKA, Vratislav, Terezie MANDÁKOVÁ, Veronika IHRADSKÁ and Jiří FAJKUS. Comparative Dissection of Three Giant Genomes: Allium cepa, Allium sativum, and Allium ursinum. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2019, vol. 20, No 3, p. 1-25. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms20030733.

BOUDICHEVSKAIA, A., A. HOUBEN, A. FIEBIG, K. PROCHAZKOVA, A. PECINKA and Inna LERMONTOVA. Depletion of KNL2 Results in Altered Expression of Genes Involved in Regulation of the Cell Cycle, Transcription, and Development in Arabidopsis. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2019, vol. 20, No 22, p. 5726-5744. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms20225726.

FINKE, A., Terezie MANDÁKOVÁ, K. NAWAZ, G.T.H. VU, P. NOVÁK, Jiří MACAS, Martin LYSÁK and A. PECINKA. Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda. Plant Journal. Oxford: Blackwell Publishing Ltd, 2019, vol. 99, No 6, p. 1066-1079. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.14380.

ZHANG, D., GQ. HAO, Xinyi GUO, QJ. HU and JQ. LIU. Genomic insight into "sky island" species diversification in a mountainous biodiversity hotspot. JOURNAL OF SYSTEMATICS AND EVOLUTION. 2019, vol. 57, No 6, p. 633-645. ISSN 1674-4918. Available from: https://dx.doi.org/10.1111/jse.12543.

MANDÁKOVÁ, Terezie and Martin LYSÁK. Healthy Roots and Leaves: Comparative Genome Structure of Horseradish and Watercress. Plant Physiology. ROCKVILLE: American Society of Plant Physiologists, 2019, vol. 179, No 1, p. 66-73. ISSN 0032-0889. Available from: https://dx.doi.org/10.1104/pp.18.01165.

MANDÁKOVÁ, Terezie, Milan POUCH, J.R. BROCK, I.A. AL-SHEHBAZ and Martin LYSÁK. Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering. Plant Cell. ROCKVILLE: AMER SOC PLANT BIOLOGISTS, 2019, vol. 31, No 11, p. 2596-2612. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.19.00366.

MANDÁKOVÁ, Terezie, Xinyi GUO and Martin LYSÁK. Phylo-cytogenomic Analysis of Genome Duplications in Crucifers. In 1st Annual CEITEC Postdoc Retreat. 2019.

MACKOVÁ, Eliška, Jana ŘEPKOVÁ and Terezie MANDÁKOVÁ. Study of karyotype structure and evolution in the genus Trifolium (Fabaceae). In XX. Setkání biochemiků a molekulárních biologů. 2019. ISBN 978-80-210-9420-8.

HLOUŠKOVÁ, Petra, Terezie MANDÁKOVÁ, Milan POUCH, Pavel TRÁVNÍČEK and Martin LYSÁK. The large genome size variation in the Hesperis clade was shaped by the prevalent proliferation of DNA repeats and rarer genome downsizing. Annals of Botany. Oxford: Oxford University Press, 2019, vol. 124, No 1, p. 103-119. ISSN 0305-7364. Available from: https://dx.doi.org/10.1093/aob/mcz036.

MANDÁKOVÁ, Terezie, J. ZOZOMOVA-LIHOVA, H. KUDOH, Y.P. ZHAO, Martin LYSÁK and K. MARHOLD. The story of promiscuous crucifers: origin and genome evolution of an invasive species, Cardamine occulta (Brassicaceae), and its relatives. Annals of Botany. Oxford: Oxford University Press, 2019, vol. 124, No 2, p. 209-220. ISSN 0305-7364. Available from: https://dx.doi.org/10.1093/aob/mcz019.

MOOD, J.D., J.F. VELDKAMP, Terezie MANDÁKOVÁ, L.M. PRINCE and H.J. DE BOER. Three new species of Boesenbergia (Zingiberaceae) from Thailand and Lao P.D.R. Gardens' Bulletin Singapore. 2019, vol. 71, No 2, p. 477-498. ISSN 0374-7859. Available from: https://dx.doi.org/10.26492/gbs71(2).2019-15.

LYSÁK, Martin. Brassicales: an update on chromosomal evolution and ancient polyploidy. Plant Systematics and Evolution. WIEN: Springer, 2018, vol. 304, No 6, p. 757-762. ISSN 0378-2697. Available from: https://dx.doi.org/10.1007/s00606-018-1507-2.

MANDÁKOVÁ, Terezie, Xinyi GUO, B. OZUDOGRU, K. MUMMENHOFF and Martin LYSÁK. Hybridization-facilitated genome merger and repeated chromosome fusion after 8 million years. Plant Journal. Oxford: Blackwell Publishing Ltd, 2018, vol. 96, No 4, p. 748-760. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.14065.

SHAN, Wenbo, Terezie MANDÁKOVÁ and Martin LYSÁK. Interphase chromosome organization and early meiotic chromosome pairing in Brassicaceae species. In 22nd International Chromosome Conference. 2018.

BAYAT, Soheila, M. Eric SCHRANZ, Eric H. ROALSON and Jocelyn C. HALL. Lessons from Cleomaceae, the Sister of Crucifers. TRENDS IN PLANT SCIENCE. 2018, vol. 23, No 9, p. 808-821. ISSN 1360-1385. Available from: https://dx.doi.org/10.1016/j.tplants.2018.06.010.

SLENKER, M., J. ZOZOMOVA-LIHOVA, Terezie MANDÁKOVÁ, H. KUDOH, Y.P. ZHAO, A. SOEJIMA, T. YAHARA, K. SKOKANOVA, S. SPANIEL and K. MARHOLD. Morphology and genome size of the widespread weed Cardamine occulta: how it differs from cleistogamic C. kokaiensis and other closely related taxa in Europe and Asia. Botanical Journal of the Linnean society. OXFORD: The Linnean Society of London, 2018, vol. 187, No 3, p. 456-482. ISSN 0024-4074. Available from: https://dx.doi.org/10.1093/botlinnean/boy030.

DOGAN, Mert, Milan POUCH, Petra HLOUŠKOVÁ, Terezie MANDÁKOVÁ and Martin LYSÁK. Phylogenetics and repeatome analysis of the southern African tribe Heliophileae. In 22nd International Chromosome Conference, 2018. 2018.

BAYAT, Soheila, Shokouh ESMAILBEGI KERMANI, Terezie MANDÁKOVÁ and Martin LYSÁK. Phylogeny and genome evolution in the tribe Thlaspideae (Brassicaceae). In 22nd International Chromosome Conference, 2018. 2018.

ESMAILBEGI KERMANI, Shokouh, I.A. AL-SHEHBAZ, Milan POUCH, Terezie MANDÁKOVÁ, K. MUMMENHOFF, M.R. RAHIMINEJAD, M. MIRTADZADINI and Martin LYSÁK. Phylogeny and systematics of the tribe Thlaspideae (Brassicaceae) and the recognition of two new genera. Taxon. Bratislava: International Assoc. for Plant Taxonomy, 2018, vol. 67, No 2, p. 324-340. ISSN 0040-0262. Available from: https://dx.doi.org/10.12705/672.4.

MANDÁKOVÁ, Terezie and Martin LYSÁK. Post-polyploid diploidization and diversification through dysploid changes. CURRENT OPINION IN PLANT BIOLOGY. LONDON: CURRENT BIOLOGY LTD, 2018, vol. 42, APR, p. 55-65. ISSN 1369-5266. Available from: https://dx.doi.org/10.1016/j.pbi.2018.03.001.

PYSEK, P., H. SKALOVA, J. CUDA, W.Y. GUO, J. SUDA, J. DOLEZAL, O. KAUZAL, C. LAMBERTINI, M. LUCANOVA, Terezie MANDÁKOVÁ, L. MORAVCOVA, K. PYSKOVA, H. BRIX and L.A. MEYERSON. Small genome separates native and invasive populations in an ecologically important cosmopolitan grass. Ecology. HOBOKEN, NJ USA: WILEY, 2018, vol. 99, No 1, p. 79-90. ISSN 0012-9658. Available from: https://dx.doi.org/10.1002/ecy.2068.

KOBRLOVA, L., Terezie MANDÁKOVÁ and M. HRONES. Taxonomic status and typification of a neglected name Symphytum leonhardtianum from the Symphytum tuberosum complex (Boraginaceae). Phytotaxa. ST LUKES, NEW ZEALAND: MAGNOLIA PRESS, 2018, vol. 349, No 3, p. 225-236. ISSN 1179-3155. Available from: https://dx.doi.org/10.11646/phytotaxa.349.3.3.

FILIAULT, D.L., ES BALLERINI, Terezie MANDÁKOVÁ, G. AKOZ, N.J. DERIEG, J. SCHMUTZ, J. JENKINS, J. GRIMWOOD, S.Q. SHU, R.D. HAYES, U. HELLSTEN, K. BARRY, J.Y. YAN, S. MIHALTCHEVA, M. KARAFIATOVA, V. NIZHYNSKA, E.M. KRAMER, Martin LYSÁK, S.A. HODGES and M. NORDBORG. The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history. elife. CAMBRIDGE: ELIFE SCIENCES PUBLICATIONS LTD, 2018, vol. 7, OCT, p. 36426-36456. ISSN 2050-084X. Available from: https://dx.doi.org/10.7554/eLife.36426.

ESMAILBEGI KERMANI, Shokouh, Martin LYSÁK, Mohammad Reza RAHIMINEJAD, Mansour MIRTADZADINI, Klaus MUMMENHOFF and Ihsan A. AL-SHEHBAZ. A taxonomic Revision of the genus Graellsia (Brassicaceae, tribe Thlaspideae). PHYTOTAXA. AUCKLAND: MAGNOLIA PRESS, 2017, vol. 313, No 1, p. 105-116. ISSN 1179-3155. Available from: https://dx.doi.org/10.11646/phytotaxa.313.1.7.

ESMAILBEGI KERMANI, Shokouh, Martin LYSÁK, Mohammad Reza RAHIMINEJAD, Mansour MIRTADZADINI, Klaus MUMMENHOFF and Ihsan A. AL-SHEHBAZ. A taxonomic revision of the genus Pseudocamelina (Brasssicaceae, tribe Thlaspideae). PHYTOTAXA. AUCKLAND: MAGNOLIA PRESS, 2017, vol. 313, No 1, p. 117-129. ISSN 1179-3155. Available from: https://dx.doi.org/10.11646/phytotaxa.313.1.8.

MANDÁKOVÁ, Terezie, Zheng LI, Michael S. BARKER and Martin LYSÁK. Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention. Plant Journal. Hoboken (USA): Wiley-Blackwell, 2017, vol. 91, No 1, p. 3-21. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.13553.

RABANAL, Fernando A., Terezie MANDÁKOVÁ, Luz M. SOTO-JIMENEZ, Robert GREENHALGH, David L. PARROTT, Stefan LUTZMAYER, Joshua G. STEFFEN, Viktoria NIZHYNSKA, Richard MOTT, Martin LYSÁK, Richar M. CLARK and Magnus NORDBORG. Epistatic and allelic interactions control expression of ribosomal RNA gene clusters in Arabidopsis thaliana. GENOME BIOLOGY. LONDON: BIOMED CENTRAL LTD, 2017, vol. 18, May, p. nestránkováno, 15 pp. ISSN 1474-760X. Available from: https://dx.doi.org/10.1186/s13059-017-1209-z.

MANDÁKOVÁ, Terezie, Hjortur THORBJORNSSON, Rahul PISUPATI, Ilka REICHARDT, Martin LYSÁK and Kesara ANAMTHAWAT-JONSSON. Icelandic accession of Arabidopsis thaliana confirmed with cytogenetic markers and its origin inferred from whole-genome sequencing. ICELANDIC AGRICULTURAL SCIENCES. REYKJAVIK: RANNSOKNASTOFNUN LANDBUNADARINS, 2017, vol. 30, No 2017, p. 29-38. ISSN 1670-567X. Available from: https://dx.doi.org/10.16886/IAS.2017.03.

MANDÁKOVÁ, Terezie, Petra HLOUŠKOVÁ, Dmitry A. GERMAN and Martin LYSÁK. Monophyletic Origin and Evolution of the Largest Crucifer Genomes. Plant Physiology. Rockville (USA): American Society of Plant Physiologists, 2017, vol. 174, No 4, p. 2062-2071. ISSN 0032-0889. Available from: https://dx.doi.org/10.1104/pp.17.00457.

MANDÁKOVÁ, Terezie, Milan POUCH, Klára HARMANOVÁ, Itay MAYROSE, Shing Hei ZHAN and Martin LYSÁK. Multispeed genome diploidization and diversification after an ancient allopolyploidization. Molecular Ecology. Blackwell Science, 2017, vol. 26, No 22, p. 6445-6462. ISSN 0962-1083. Available from: https://dx.doi.org/10.1111/mec.14379.

CHUMOVA, Zuzana, Eliska ZAVESKA, Terezie MANDÁKOVÁ, Karol KRAK and Pavel TRAVNICEK. The Mediterranean: the cradle of Anthoxanthum (Poaceae) diploid diversity. Annals of Botany. Oxford: Oxford University Press, 2017, vol. 120, No 2, p. 285-302. ISSN 0305-7364. Available from: https://dx.doi.org/10.1093/aob/mcx021.

RABANAL, Fernando A., Viktoria NIZHYNSKA, Terezie MANDÁKOVÁ, Polina Yu NOVIKOVA, Martin LYSÁK, Richard MOTT and Magnus NORDBORG. Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana. G3-Genes, Genomes, Genetics. USA: Bethesda, 2017, vol. 7, No 4, p. 1201-1209. ISSN 2160-1836. Available from: https://dx.doi.org/10.1534/g3.117.040204.

LEE, Cheng-Ruei, Baosheng WANG, Julius P. MOJICA, Terezie MANDÁKOVÁ, Kasavajhala V. S. K. PRASAD, Jose Luis GOICOECHEA, Nadeesha PERERA, Uffe HELLSTEN, Hope N. HUNDLEY, Jenifer JOHNSON, Jane GRIMWOOD, Kerrie BARRY, Stephen FAIRCLOUGH, Jerry W. JENKINS, Yeisoo YU, Dave KUDRNA, Jianwei ZHANG, Jayson TALAG, Wolfgang GOLSER, Kathryn GHATTAS, M. Eric SCHRANZ, Rod WING, Martin LYSÁK, Jeremy SCHMUTZ, Daniel S. ROKHSAR and Thomas MITCHELL-OLDS. Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology and Evolution. Nature Publishing Group, 2017, vol. 1, No 5, p. nestránkováno, 12 pp. ISSN 2397-334X. Available from: https://dx.doi.org/10.1038/s41559-017-0119.

CHUMOVA, Zuzana, Terezie MANDÁKOVÁ and Pavel TRAVNICEK. Are B-chromosomes responsible for the extraordinary genome size variation in selected Anthoxanthum annuals? Plant Systematics and Evolution. WIEN: Springer, 2016, vol. 302, No 6, p. 731-738. ISSN 0378-2697. Available from: https://dx.doi.org/10.1007/s00606-016-1295-5.

LYSÁK, Martin, Terezie MANDÁKOVÁ and M. Eric SCHRANZ. Comparative paleogenomics of crucifers: ancestral genomic blocks revisited. CURRENT OPINION IN PLANT BIOLOGY. LONDON: CURRENT BIOLOGY LTD, 2016, vol. 30, April, p. 108-115. ISSN 1369-5266. Available from: https://dx.doi.org/10.1016/j.pbi.2016.02.001.

KOLÁŘ, Filip, Magdalena LUČANOVÁ, Eliška ZÁVESKÁ, Gabriela FUXOVÁ, Terezie MANDÁKOVÁ, Stanislav ŠPANIEL, Dušan SENKO, Marek SVITOK, Martin KOLNÍK, Zigmantas GUDŽINSKAS and Karol MARHOLD. Ecological segregation does not drive the intricate parapatric distribution of diploid and tetraploid cytotypes of the Arabidopsis arenosa group (Brassicaceae). Biological Journal of the Linnean Society. Hoboken: Wiley-Blackwell, 2016, vol. 119, No 3, p. 673-688. ISSN 0024-4066. Available from: https://dx.doi.org/10.1111/bij.12479.

MANDÁKOVÁ, Terezie, Andrew D. GLOSS, Noah K. WHITEMAN and Martin LYSÁK. How diploidization turned a tetraploid into a pseudotriploid. American Journal of Botany. St Louis: Botanical Soc Amer Inc, 2016, vol. 103, No 7, p. 1187-1196. ISSN 0002-9122. Available from: https://dx.doi.org/10.3732/ajb.1500452.

JANEČKA, Jan and Martin LYSÁK. chromDraw: an R package for visualization of linear and circular karyotypes. Chromosome Research. Dordrecht: Springer, 2016, vol. 24, No 2, p. 217-223. ISSN 0967-3849. Available from: https://dx.doi.org/10.1007/s10577-015-9513-5.

MANDÁKOVÁ, Terezie and Martin LYSÁK. Chromosome Preparation for Cytogenetic Analyses in Arabidopsis. Current protocols in plant biology. John Wiley & Sons, 2016, vol. 1, No 1, p. 43-51. ISSN 2379-8068. Available from: https://dx.doi.org/10.1002/cppb.20009.

MANDÁKOVÁ, Terezie and Martin LYSÁK. Painting of Arabidopsis Chromosomes with Chromosome-Specific BAC Clones. Current protocols in plant biology. John Wiley & Sons, 2016, vol. 4, No 2, p. 359-371. ISSN 2379-8068. Available from: https://dx.doi.org/10.1002/cppb.20022.

GEISER, Celine, Terezie MANDÁKOVÁ, Nils ARRIGO, Martin LYSÁK and Christian PARISOD. Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard. Plant Cell. ROCKVILLE: AMER SOC PLANT BIOLOGISTS, 2016, vol. 28, No 1, p. 17-27. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.15.00791.

ŠTEFANIČ, Stanislav and Matej LEXA. A flexible denormalization technique for data analysis above a deeply-structured relational database: biomedical applications. In Ortuño, Francisco and Rojas, Ignacio. Lecture Notes in Computer Science 9043, Bioinformatics and Biomedical Engineering, Third International Conference, IWBBIO 2015, Granada, Spain, April 15-17 2015, Proceedings, Part I. Cham: Springer International Publishing, 2015, p. 120-133. ISBN 978-3-319-16482-3. Available from: https://dx.doi.org/10.1007/978-3-319-16483-0_12.

HOHMANN, Nora, Eva M. WOLF, Martin LYSÁK and Marcus A. KOCH. A time-calibrated road map of brassicaceae species radiation and evolutionary history. The Plant Cell. Rockville (USA): American Society of Plant Biologists, 2015, vol. 27, No 10, p. 2770-2784. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.15.00482.

KELLY, Laura J., Simon RENNY-BYFIELD, Jaume PELLICER, Jiří MACAS, Petr NOVÁK, Pavel NEUMANN, Martin LYSÁK, Peter D. DAY, Madeleine BERGER, Michael F. FAY, Richard A. NICHOLS, Andrew R. LEITCH and Ilia J. LEITCH. Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size. New Phytologist. HOBOKEN: WILEY-BLACKWELL, 2015, vol. 208, No 2, p. 596-607. ISSN 0028-646X. Available from: https://dx.doi.org/10.1111/nph.13471.

TAN, Ek Han, Isabelle M. HENRY, Maruthachalam RAVI, Keith R. BRADNAM, Terezie MANDÁKOVÁ, Mohan P. A. MURIMUTHU, Ian KORF, Martin LYSÁK, Luca COMAI and Simon W. L. CHAN. Catastrophic chromosomal restructuring during genome elimination in plants. eLife. Oxford: eLife Sciences Publications, 2015, vol. 4, may, p. "nestránkováno", 16 pp. ISSN 2050-084X. Available from: https://dx.doi.org/10.7554/eLife.06516.

TRAN, Trunk D., Hieu X. CAO, Gabriele JOVTCHEV, Pavel NEUMANN, Petr NOVÁK, Miloslava FOJTOVÁ, Giang T. H. VU, Jiří MACAS, Jiří FAJKUS, Ingo SCHUBERT and Joerg FUCHS. Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea. Plant Journal. Hoboken (USA): Wiley-Blackwell, 2015, vol. 84, No 6, p. 1087-1099. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.13058.

VU, Giang T. H., Thomas SCHMUTZER, Fabian BULL, Hieu X. CAO, Joerg FUCHS, Trung D. TRAN, Gabriele JOVTCHEV, Klaus PISTRICK, Nils STEIN, Aleš PEČINKA, Pavel NEUMANN, Petr NOVAK, Jiří MACAS, Paul H. DEAR, Frank R. BLATTNER, Uwe SCHOLZ and Ingo SCHUBERT. Comparative Genome Analysis Reveals Divergent Genome Size Evolution in a Carnivorous Plant Genus. PLANT GENOME. MADISON (USA): CROP SCIENCE SOC AMER, 2015, vol. 8, No 3, p. nestránkováno, 14 pp. ISSN 1940-3372. Available from: https://dx.doi.org/10.3835/plantgenome2015.04.0021.

VONDROVÁ, Lucie, Lucie KOZÁKOVÁ, Karel STEJSKAL, Panagoula CHARALABOUS, Peter KOLESÁR, Alan LEHMANN, Stjepan ULDRIJAN, Christopher M. SANDERSON, Zbyněk ZDRÁHAL and Jan PALEČEK. Evolution of the NSE1-NSE3-NSE4 subcomplex of the human SMC5/6 complex. In SMC proteins: Chromosomal organizers from bacteria to human. 2015.

CHUMOVÁ, Zuzana, Jana KREJČÍKOVÁ, Terezie MANDÁKOVÁ, Jan SUDA and Pavel TRÁVNÍČEK. Evolutionary and Taxonomic Implications of Variation in Nuclear Genome Size: Lesson from the Grass Genus Anthoxanthum (Poaceae). Plos one. San Francisco: Public Library of Science, 2015, vol. 10, No 7, p. "nestránkováno", 17 pp. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0133748.

WILLING, Eva-Maria, Vimal RAWAT, Terezie MANDÁKOVÁ, Florian MAUMUS, Geo Velikkakam JAMES, Karl J. V. NORDSTROM, Claude BECKER, Norman WARTHMANN, Claudia CHICA, Bogna SZARZYNSKA, Matthias ZYTNICKI, Maria C. ALBANI, Christiane KIEFER, Sara BERGONZI, Loren CASTAINGS, Julieta L. MATEOS, Markus C. BERNS, Nora BUJDOSO, Thomas PIOFCZYK, Laura DE LORENZO, Cristina BARRERO-SICILIA, Isabel MATEOS, Mathieu PIEDNOEL, Joerg HAGMANN, Romy CHEN-MIN-TAO, Raquel IGLESIAS-FERNANDEZ, Stephan C. SCHUSTER, Carlos ALONSO-BLANCO, Francois ROUDIER, Pilar CARBONERO, Javier PAZ-ARES, Seth J. DAVIS, Aleš PEČINKA, Hadi QUESNEVILLE, Vincent COLOT, Martin LYSÁK, Detlef WEIGEL, George COUPLAND and Korbinian SCHNEEBERGER. Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. NATURE PLANTS. LONDON: NATURE PUBLISHING GROUP, 2015, vol. 1, No 2, p. 1-7. ISSN 2055-026X. Available from: https://dx.doi.org/10.1038/NPLANTS.2014.23.

MANDÁKOVÁ, Terezie, Vasantika SINGH, Ute KRAMER and Martin LYSÁK. Genome Structure of the Heavy Metal Hyperaccumulator Noccaea caerulescens and Its Stability on Metalliferous and Nonmetalliferous Soils. Plant Physiology. Rockville (USA): American Society of Plant Physiologists, 2015, vol. 169, No 1, p. "674"-"+", 22 pp. ISSN 0032-0889. Available from: https://dx.doi.org/10.1104/pp.15.00619.

TRAN, Trung D., Hieu X. CAO, Gabriele JOVTCHEV, Petr NOVÁK, Giang T. H. VU, Jiří MACAS, Ingo SCHUBERT and Joerg FUCHS. Chromatin organization and cytological features of carnivorous Genlisea species with large genome size differences. Frontiers in Plant Science. Lausanne (Switzerland): Frontiers Media SA, 2015, vol. 6, august, p. "nestránkováno", 10 pp. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2015.00613.

JANEČKA, Jan and Martin LYSÁK. chromDraw: a bioinformatic tool for visualization of linear and circular karyotypes. In The Biomania - Student Scientific Meeting 2015. 2015. ISBN 978-80-210-7933-5.

JANEČKA, Jan and Martin LYSÁK. chromDraw: an R package for visualization of linear and circular karyotypes. In CEITEC PhD Retreat. 2015. ISBN 978-80-210-7825-3.

JANEČKA, Jan and Martin LYSÁK. chromDraw for visualization of linear and circular karyotypes. In European Bioconductor Developers' Meeting 2015. 2015.

BONCZEK, Ondřej, Alena ŽÁKOVSKÁ, Lýdia HLINECKÁ and Omar ŠERÝ. Identification of Borrelia burgdorferi genospecies isolated from Ixodes ricinus ticks in the South Moravian region of the Czech Republic. Annals of Agricultural and Environmental Medicine. Institute of Agricultural Medicine, 2015, vol. 22, No 4, p. 637-641. ISSN 1232-1966. Available from: https://dx.doi.org/10.5604/12321966.1185766.

MANDÁKOVÁ, Terezie, M. Eric SCHRANZ, Timothy F. SHARBEL, Hans DE JONG and Martin LYSÁK. Karyotype evolution in apomictic Boechera and the origin of the aberrant chromosomes. Plant Journal. Hoboken (USA): Wiley-Blackwell, 2015, vol. 82, No 5, p. 785-793. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.12849.

CAO, Hieu X., Thomas SCHMUTZER, Uwe SCHOLZ, Aleš PEČINKA, Ingo SCHUBERT and Giang T. H. VU. Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species. Frontiers in Microbiology. Lausanne (Switzerland): Frontiers Media SA, 2015, vol. 6, july, p. "nestránkováno", 15 pp. ISSN 1664-302X. Available from: https://dx.doi.org/10.3389/fmicb.2015.00526.

WICKER, Thomas, Rod A. WING and Ingo SCHUBERT. Recurrent sequence exchange between homeologous grass chromosomes. Plant Journal. Hoboken (USA): Wiley-Blackwell, 2015, vol. 84, No 4, p. 747-759. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.13040.

CHENG, F., Martin LYSÁK, Terezie MANDÁKOVÁ and X. WANG. The Common Ancestral Genome of the Brassica Species. In Wang X. ; Kole CH. The Brassica rapa Genome. Německo: Springer Berlin Heidelberg, 2015, p. 97-105. Compendium of Plant Genomes. ISBN 978-3-662-47900-1. Available from: https://dx.doi.org/10.1007/978-3-662-47901-8_8.

ADAMASZEK, Anna and Alexandru POPA. Algorithmic and Hardness Results for the Colorful Components Problems. In 11th Latin American Theoretical Informatics Symposium, LATIN 2014. Berlin: Springer, 2014, p. 683-694. ISBN 978-3-642-54422-4. Available from: https://dx.doi.org/10.1007/978-3-642-54423-1_59.

POPA, Alexandru. Better lower and upper bounds for the minimum rainbow subgraph problem. Theoretical Computer Science. North Holland, 2014, vol. 543, C, p. 1-8. ISSN 0304-3975. Available from: https://dx.doi.org/10.1016/j.tcs.2014.05.008.

LEXA, Matej, Lenka RADOVÁ, Martin LYSÁK, Tomáš MARTÍNEK, Nikola TOM, Karol PÁL, Alexandru POPA and Jana KAPUSTOVÁ. Bioinformatics Summer School 2014: Theoretical and practical aspects of processing and analysis of sequencing data. 2014. Available from: https://dx.doi.org/10.13140/RG.2.1.4517.0721.

KIEFER, Markus, Roswitha SCHMICKL, Dmitry A. GERMAN, Terezie MANDÁKOVÁ, Martin LYSÁK, Ihsan A. AL-SHEHBAZ, Andreas FRANZKE, Klaus MUMMENHOFF, Alexandros STAMATAKIS and Marcus A. KOCH. BrassiBase: Introduction to a Novel Knowledge Database on Brassicaceae Evolution. PLANT AND CELL PHYSIOLOGY. Oxford: Oxford University Press, 2014, vol. 55, No 1, p. "nestránkováno", 9 pp. ISSN 0032-0781. Available from: https://dx.doi.org/10.1093/pcp/pct158.

HAY, Angela S., Bjorn PIEPER, Elizabeth COOKE, Terezie MANDÁKOVÁ, Maria CARTOLANO, Alexander D. TATTERSALL, Raffaele D. IOIO, Simon J. MCGOWAN, Michalis BARKOULAS, Carla GALINHA, Madlen I. RAST, Hugo HOFHUIS, Christiane THEN, Jörg PLIESKE, Martin GANAL, Richard MOTT, Jaime F. MARTINEZ- GARCIA, Mark A. CARINE, Robert W. SCOTLAND, Xiangchao GAN, Dmitry A. FILATOV, Martin LYSÁK and Miltos TSIANTIS. Cardamine hirsuta: a versatile genetic system for comparative studies. The Plant Journal. Hoboken (USA): Blackwell Science, 2014, vol. 78, No 1, p. 1-15. ISSN 0960-7412. Available from: https://dx.doi.org/10.1111/tpj.12447.

LYSÁK, Martin and Paul F. FRANSZ. From transposon to chromosome and polyploidy. An update on cytogenetics and genomics of Arabidopsis. Chromosome Research. Dordrecht: Springer, 2014, vol. 22, No 2, p. 99-101. ISSN 0967-3849. Available from: https://dx.doi.org/10.1007/s10577-014-9427-7.

LEXA, Matej, Pavlina STEFLOVA, Tomáš MARTÍNEK, Michaela VORLÍČKOVÁ, Boris VYSKOT and Eduard KEJNOVSKÝ. Guanine quadruplexes are formed by specific regions of human transposable elements. BMC Genomics. London: BioMed Central Ltd, 2014, vol. 15, No 1, p. 1032-1043. ISSN 1471-2164. Available from: https://dx.doi.org/10.1186/1471-2164-15-1032.

SCHUBERT, Veit, Radoslaw RUDNIK and Ingo SCHUBERT. Chromatin associations in Arabidopsis interphase nuclei. FRONTIERS IN GENETICS. LAUSANNE: FRONTIERS MEDIA SA, 2014, vol. 5, NOV 13 2014, p. 1-11. ISSN 1664-8021. Available from: https://dx.doi.org/10.3389/fgene.2014.00389.

MAJEROVÁ, Eva, Terezie MANDÁKOVÁ, GTH VU, Jiří FAJKUS, Martin LYSÁK and Miloslava FOJTOVÁ. Chromatin features of plant telomeric sequences at terminal vs. internal positions. Frontiers in Plant Science. LAUSANNE: Frontiers Research Foundation, 2014, vol. 5, November, p. "nestránkováno", 10 pp. ISSN 1664-462X. Available from: https://dx.doi.org/10.3389/fpls.2014.00593.

LYSÁK, Martin. Live and let die: centromere loss during evolution of plant chromosomes. New Phytologist. Hoboken: WILEY-BLACKWELL, 2014, vol. 203, No 4, p. 1082-1089. ISSN 0028-646X. Available from: https://dx.doi.org/10.1111/nph.12885.

SCHUBERT, Veit, Inna LERMONTOVA and Ingo SCHUBERT. Loading of the centromeric histone H3 variant during meiosis-how does it differ from mitosis? Chromosoma. New York: Springer, 2014, vol. 123, No 5, p. 491-497. ISSN 0009-5915. Available from: https://dx.doi.org/10.1007/s00412-014-0466-9.

FENNER, T., O. LACHISCH and Alexandru POPA. Min-sum 2-paths problems. In 11th International Workshop on Approximation and Online Algorithms, WAOA 2013, LNCS 8447. Sophia Antipolis; France: Springer, 2014, p. 1-11. ISBN 978-3-319-08000-0. Available from: https://dx.doi.org/10.1007/978-3-319-08001-7_1.

KANTOROVÁ, Barbara, Veronika NAVRKALOVÁ, Boris TICHÝ, Jitka MALČÍKOVÁ, Nikola TOM, Karol PÁL, Kateřina STAŇO KOZUBÍK, Sylvia TAKÁČOVÁ, Karla PLEVOVÁ, Martin TRBUŠEK, Yvona BRYCHTOVÁ, Michael DOUBEK, Jiří MAYER and Šárka POSPÍŠILOVÁ. Molekulární prognostické markery chronické lymfocytární leukemie a význam sekvenování nové generace při studiu patogeneze onemocnění. In XXIII. Olomoucké hematologické dny, Olomouc. 2014.

ZOZOMOVÁ-LIHOVÁ, Judita, Karol KRAK, Terezie MANDÁKOVÁ, Kentaro K. SHIMIZU, Stanislav ŠPANIEL, Petr VÍT and Martin LYSÁK. Multiple hybridization events in Cardamine (Brassicaceae) during the last 150 years: revisiting a textbook example of neoallopolyploidy. Annals of Botany. Oxford: Oxford University Press, 2014, vol. 113, No 5, p. 817-830. ISSN 0305-7364. Available from: https://dx.doi.org/10.1093/aob/mcu012.

KANTOROVÁ, Barbara, Jitka MALČÍKOVÁ, Veronika NAVRKALOVÁ, Jana ŠMARDOVÁ, Kamila BRÁZDILOVÁ, Karla PLEVOVÁ, Eva DIVÍŠKOVÁ, Marek BORSKÝ, Šárka PAVLOVÁ, Nikola TOM, Karol PÁL, Martin TRBUŠEK, Alexandra OLTOVÁ, Yvona BRYCHTOVÁ, Michael DOUBEK, Jiří MAYER and Šárka POSPÍŠILOVÁ. Prognostic impact of NOTCH1 hotspot mutation in TP53-mutated patients with chronic lymphocytic leukemia. In 56th ASH Annual Meeting and Exposition, USA. 2014.

KEJNOVSKÝ, Eduard and Matej LEXA. Quadruplex-forming DNA sequences spread by retrotransposons may serve as genome regulators. Mobile Genetic Elements. Landes Bioscience, 2014, vol. 4, No 1, p. "e28084", 4 pp. ISSN 2159-256X. Available from: https://dx.doi.org/10.4161/mge.28084.

LEXA, Matej, Eduard KEJNOVSKÝ, Pavlína ŠTEFLOVÁ, Helena KONVALINOVÁ, Michaela VORLÍČKOVÁ and Boris VYSKOT. Quadruplex-forming sequences occupy discrete regions inside plant LTR retrotransposons. Nucleic Acids Research. Oxford: Oxford University Press, 2014, vol. 42, No 2, p. 968-978. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkt893.

VU, Giang T.H., Hieu X. CAO, Koichi WATANABE, Goetze HENSEL, Frank R. BLATTNER, Jochen KUMLEHN and Ingo SCHUBERT. Repair of Site-Specific DNA Double-Strand Breaks in Barley Occurs via Diverse Pathways Primarily Involving the Sister Chromatid. The Plant Cell. Rockville (USA): American Society of Plant Physiologists, 2014, vol. 26, No 5, p. 2156-2167. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.114.126607.

PLEVOVÁ, Karla, Kamila BRÁZDILOVÁ, Kateřina BURČKOVÁ, Marek BORSKÝ, Karol PÁL, Filip PARDY, Hana SKUHROVÁ FRANCOVÁ, Jitka MALČÍKOVÁ, Yvona BRYCHTOVÁ, Michael DOUBEK, Boris TICHÝ and Šárka POSPÍŠILOVÁ. Significance of genomic abnormalities in evolution of biclonal chronic lymphocytic leukemia. In Human Genome Meeting, Švýcarsko. 2014.

LEXA, Matej and Stanislav ŠTEFANIČ. The Possibilities of Filtering Pairs of SNPs in GWAS Studies Exploratory Study on Public Protein-interaction and Pathway Data. In Pastor, O Sinoquet, C Plantier, G Schultz, T Fred, A Gamboa, H. BIOINFORMATICS 2014: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOINFORMATICS MODELS, METHODS AND ALGORITHMS. SETUBAL: SCITEPRESS, 2014, p. 259-264. ISBN 978-989-758-012-3.

LEXA, Matej and Stanislav ŠTEFANIČ. The possibilities of using biological knowledge for filtering pairs of SNPs in GWAS studies: an exploratory study on public protein-interaction and pathway data. In Oscar Pastor, Christine Sinoquet, Guy Plantier, Tanja Schultz, Ana L. N. Fred, Hugo Gamboa. Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. Angers, France: SciTePress, 2014, p. 259-264. ISBN 978-989-758-012-3. Available from: https://dx.doi.org/10.5220/0004915002590264.

MANDÁKOVÁ, Terezie, Karol MARHOLD and Martin LYSÁK. The widespread crucifer species Cardamine flexuosa is an allotetraploid with a conserved subgenomic structure. New Phytologist. Hoboken: WILEY-BLACKWELL, 2014, vol. 201, No 3, p. 982-992. ISSN 0028-646X. Available from: https://dx.doi.org/10.1111/nph.12567.

LEXA, Matej, Tomáš MARTÍNEK and Marie BRÁZDOVÁ. Uneven distribution of potential triplex sequences in the human genome. In silico study using the R/Bioconductor package triplex. In Oscar Pastor, Christine Sinoquet, Guy Plantier, Tanja Schultz, Ana L. N. Fred, Hugo Gamboa. Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. Angers, France: SciTePress, 2014, p. 80-88. ISBN 978-989-758-012-3. Available from: https://dx.doi.org/10.5220/0004824100800088.

KANTOROVÁ, Barbara, Veronika NAVRKALOVÁ, Boris TICHÝ, Jitka MALČÍKOVÁ, Nikola TOM, Karol PÁL, Kateřina STAŇO KOZUBÍK, Sylvia TAKÁČOVÁ, Karla PLEVOVÁ, Martin TRBUŠEK, Yvona BRYCHTOVÁ, Michael DOUBEK, Jiří MAYER and Šárka POSPÍŠILOVÁ. Význam mutační analýzy prognostických markerů u chronické lymfocytární leukemie s využitím přístupů další generace sekvenováním. In Kaprasův den - Klinická genetika, Praha. 2014.

ZOZOMOVÁ-LIHOVÁ, Judita, Terezie MANDÁKOVÁ, Alena KOVAŘÍKOVÁ, Andreas MÜHLHAUSEN, Klaus MUMMENHOFF, Martin LYSÁK and Aleš KOVAŘÍK. When fathers are instant losers: homogenization of rDNA loci in recently formed Cardamine X schulzii trigenomic allopolyploid. New Phytologist. Hoboken: WILEY-BLACKWELL, 2014, vol. 203, No 4, p. 1096-1108. ISSN 0028-646X. Available from: https://dx.doi.org/10.1111/nph.12873.

JAŠKE, Karin, Petr MOKROŠ, Iva MOZGOVÁ, Miloslava FOJTOVÁ and Jiří FAJKUS. A telomerase-independent component of telomere loss in chromatin assembly factor 1 mutants of Arabidopsis thaliana. Chromosoma. Springer, 2013, vol. 122, No 4, p. 285-293. ISSN 0009-5915. Available from: https://dx.doi.org/10.1007/s00412-013-0400-6.

HAUNDRY, Annabelle, Adrian E. PLATTS, Emilio VELLO, Douglas R. HOEN, Mickael LECLERCQ, Robert J. WILLIAMSON, Ewa FORCZEK, Zoé JOLY-LOPEZ, Joshua G. STEFFEN, Khaled M. HAZZOURI, Ken DEWAR, John R. STINCHCOMBE, Daniel J. SCHOEN, Xiaowu WANG, Jeremy SCHMUTZ, Christopher D. TOWN, Patrick P. EDGER, J. Chris PIRES, Karen S. SCHUMAKER, David E. JARVIS, Terezie MANDÁKOVÁ, Martin LYSÁK, Erik VAN DEN BERGH, M. Eric SCHRANZ, Paul M. HARRISON, Alan M. MOSES, Thomas E. BUREAU, Stephen I. WRIGHT and Mathieu BLANCHETTE. An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nature Genetics. New York: Nature Publishing Group, 2013, vol. 45, No 8, p. 891-"U228", 10 pp. ISSN 1061-4036. Available from: https://dx.doi.org/10.1038/ng.2684.

LYSÁK, Martin and Terezie MANDÁKOVÁ. Analysis of Plant Meiotic Chromosomes by Chromosome Painting. In Pawlowski Wojciech P.; Grelon Mathidle; Armstrong Susan. Plant Meiosis: Methods and Protocols. New York: Humana Press, 2013, p. 13-24. Part 1. ISBN 978-1-62703-332-9. Available from: https://dx.doi.org/10.1007/978-1-62703-333-6_2.

LERMONTOVA, Inna, Markus KUHLMANN, Swetlana FRIEDEL, Twan RUTTEN, Stefan HECKMANN, Michael SANDMANN, Dmitri DEMIDOV, Veit SCHUBERT and Ingo SCHUBERT. Arabidopsis KINETOCHORE NULL2 Is an Upstream Component for Centromeric Histone H3 Variant cenH3 Deposition at Centromeres. Plant Cell. AMER SOC PLANT BIOLOGISTS, 2013, vol. 25, No 9, p. 3389-3404. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.113.114736.

LEXA, Matej. Bioinformatika v štúdiu genómov a proteómov (ITAT 2013) (Bioinformatics in genomics and proteomics (ITAT 2013)). 2013.

ŠTEFLOVÁ, Pavlína, Viktor TOKAN, Ivan VOGEL, Matej LEXA, Jiří MACAS, Petr NOVAK, Roman HOBZA, Boris VYSKOT and Eduard KEJNOVSKÝ. Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa. GENOME BIOLOGY AND EVOLUTION. Oxford, UK: Oxford Univ Press, 2013, vol. 5, No 4, p. 769-782. ISSN 1759-6653. Available from: https://dx.doi.org/10.1093/gbe/evt049.

CHENG, Feng, Terezie MANDÁKOVÁ, Jian WU, Qi XIE, Martin LYSÁK and Xiaowu WANG. Deciphering the Diploid Ancestral Genome of the Mesohexaploid Brassica rapa. Plant Cell. AMER SOC PLANT BIOLOGISTS, 2013, vol. 25, No 5, p. 1541-1554. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.113.110486.

KOSINA, Marcel, Ivana MAŠLAŇOVÁ, Andrea VÁVROVÁ PASCUTTI, Ondrej ŠEDO, Matej LEXA, Pavel ŠVEC and Ivo SEDLÁČEK. Description of Pseudomonas jessenii subsp. pseudoputida subsp. nov., amended description of Pseudomonas jessenii and description of Pseudomonas jessenii subsp. jessenii subsp. nov. Folia Microbiologica. Praha: Czechoslovak Society for Microbiology, 2013, vol. 58, No 6, p. 631-639. ISSN 0015-5632. Available from: https://dx.doi.org/10.1007/s12223-013-0236-8.

ŠTEFANIČ, Stanislav and Matej LEXA. Generovanie simulovaných testovacích dát pre genómové asociačné štúdie (Generating simulated testing data for genome-wide association studies). In Tomáš Vinař, Martin Holeňa, Matej Lexa, Ladislav Peška, Peter Vojtáš. ITAT 2013: Information Technologies - Applications and Theory (Workshops, Posters, and Tutorials). Neuvedeno: CreateSpace Independent Publishing Platform, 2013, p. 64-68. ISBN 1-4909-5208-X.

BRÁZDOVÁ, Marie, Tomáš MARTÍNEK and Matej LEXA. In silico search for secondary structures in p53 target genes using R/Bioconductor. In Tomáš Vinař, Martin Holeňa, Matej Lexa, Ladislav Peška, Peter Vojtáš. ITAT 2013: Information Technologies - Applications and Theory (Workshops, Posters, and Tutorials). Neuvedeno: CreateSpace Independent Publishing Platform, 2013, p. 42-46. ISBN 1-4909-5208-X.

VINAŘ, Tomáš, Martin HOLEŇA, Matej LEXA, Ladislav PEŠKA and Peter VOJTÁŠ. ITAT 2013: Information Technologies - Applications and Theory (Workshops, Posters, and Tutorials). Neuvedeno: CreateSpace Independent Publishing Platform, 2013, 142 pp. ISBN 1-4909-5208-X.

LONG, Quan, Fernando A. RABANAL, Dazhe MENG, Christian D. HUBER, Ashley FARLOW, Alexander PLATZER, Qingrun ZHANG, Bjarni J. VILHJÁLMSSON, Arthur KORTE, Viktoria NIZHYNSKA, Viktor VORONIN, Pamela KORTE, Laura SEDMAN, Terezie MANDÁKOVÁ, Martin LYSÁK, Uemit SEREN, Ines HELLMANN and Magnus NORDBORG. Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nature Genetics. New York: Nature Publishing Group, 2013, vol. 45, No 8, p. 884-"U218", 8 pp. ISSN 1061-4036. Available from: https://dx.doi.org/10.1038/ng.2678.

BRÁZDOVÁ, Marie, Lucie NAVRATILOVA, Vlastimil TICHÝ, Kateřina NĚMCOVÁ, Matej LEXA, Roman HRSTKA, Petr PECINKA, Matej ADÁMIK, Bořivoj VOJTĚŠEK, Emil PALECEK, Wolfgang DEPPERT and Miroslav FOJTA. Preferential Binding of Hot Spot Mutant p53 Proteins to Supercoiled DNA In Vitro and in Cells. Plos One. SAN FRANCISCO: PUBLIC LIBRARY SCIENCE, 2013, vol. 8, No 3, p. "e59567", 17 pp. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0059567.

ŽĎÁRSKÁ, Markéta, Pavlína ZATLOUKALOVÁ, Mariana BENITEZ KEINRAD, Ondrej ŠEDO, David POTĚŠIL, Ondřej NOVÁK, Jana SVAČINOVÁ, Bedřich PEŠEK, Jiří MALBECK, Jana VAŠÍČKOVÁ, Zbyněk ZDRÁHAL and Jan HEJÁTKO. Proteome Analysis in Arabidopsis Reveals Shoot- and Root-Specific Targets of Cytokinin Action and Differential Regulation of Hormonal Homeostasis. Plant Physiology. USA: American Society of Plant Physiologists, 2013, vol. 161, No 2, p. 918-930. ISSN 0032-0889. Available from: https://dx.doi.org/10.1104/pp.112.202853.

KOSINA, Marcel, Miloš BARTÁK, Ivana MAŠLAŇOVÁ, Andrea VÁVROVÁ PASCUTTI, Ondrej ŠEDO, Matej LEXA and Ivo SEDLÁČEK. Pseudomonas prosekii sp. nov., a Novel Psychrotrophic Bacterium from Antarctica. Current Microbiology. Springer US, 2013, vol. 67, No 6, p. 637-646. ISSN 0343-8651. Available from: https://dx.doi.org/10.1007/s00284-013-0406-6.

HON, Jiří, Matej LEXA, Tomáš MARTÍNEK and Kamil RAJDL. R/Bioconductor package for identification of triplex-forming sequences. 2013.

ZACHOVÁ, Dagmar, Miloslava FOJTOVÁ, Martina DVOŘÁČKOVÁ, Iva MOZGOVÁ, Inna LERMONTOVA, Vratislav PEŠKA, Ingo SCHUBERT, Jiří FAJKUS and Eva SÝKOROVÁ. Structure-function relationships during transgenic telomerase expression in Arabidopsis. PHYSIOLOGIA PLANTARUM. Copenhagen: WILEY-BLACKWELL, 2013, vol. 149, No 1, p. 114-126. ISSN 0031-9317. Available from: https://dx.doi.org/10.1111/ppl.12021.

PONTVIANNE, Frédéric N., Todd BLEVINS, Chinmayi CHANDRASEKHARA, Iva MOZGOVÁ, Christiane HASSEL, Olga M.F. PONTES, Tucker TUCKER, Petr MOKROŠ, Veronika MUCHOVÁ, Jiří FAJKUS and Craig S. PIKAARD. Subnuclear partitioning of rRNA genes between the nucleolus and nucleoplasm reflects alternative epiallelic states. GENES & DEVELOPMENT. COLD SPRING HARBOR: COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT, 2013, vol. 27, No 14, p. 1545-1550. ISSN 0890-9369. Available from: https://dx.doi.org/10.1101/gad.221648.113.

SLOTTE, Tanja, Khaled M. HAZZOURI, J. Arvid AGREN, Daniel KOENIG, Florian MAUMUS, Ya-Long GUO, Kim STEIGE, Adrian E. PLATTS, Juan S. ESCOBAR, L. Killian NEWMAN, Wei WANG, Terezie MANDÁKOVÁ, Emilio VELLO, Lisa M. SMITH, Stefan R. HENZ, Joshua STEFFEN, Shohei TAKUNO, Yaniv BRANDVAIN, Graham COOP, Peter ANDOLFATTO, Tina T. HU, Mathieu BLANCHETTE, Richard M. CLARK, Hadi QUESNEVILLE, Magnus NORDBORG, Brandon S. GAUT, Martin LYSÁK, Jerry JENKINS, Jane GRIMWOOD, Jarrod CHAPMAN, Simon PROCHNIK, Shengqiang SHU, Daniel ROKHSAR, Jeremy SCHMUTZ, Detlef WEIGEL and Stephen I. WRIGHT. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. New York: Nature Publishing Group, 2013, vol. 45, No 7, p. 831-"U165", 7 pp. ISSN 1061-4036. Available from: https://dx.doi.org/10.1038/ng.2669.

MANDÁKOVÁ, Terezie, Aleš KOVAŘÍK, Judita ZOZOMOVÁ-LIHOVÁ, Rie SHIMIZU-INATSUGI, Kentaro K. SHIMIZU, Klaus MUMMENHOFF, Karol MARHOLD and Martin LYSÁK. The More the Merrier: Recent Hybridization and Polyploidy in Cardamine. Plant Cell. ROCKVILLE: AMER SOC PLANT BIOLOGISTS, 2013, vol. 25, No 9, p. 3280-3295. ISSN 1040-4651. Available from: https://dx.doi.org/10.1105/tpc.113.114405.

HON, Jiří, Tomáš MARTÍNEK, Kamil RAJDL and Matej LEXA. Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences. Bioinformatics. Oxford: Oxford University Press, 2013, vol. 29, No 15, p. 1900-1901. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btt299.

BYSTRÝ, Vojtěch and Matej LEXA. cswHMM: a novel context switching hidden Markov model for biological sequence analysis. In Jan Schier, Carlos Correia, Ana Fred and Hugo Gamboa. Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. Neuveden: SciTePress, 2012, p. 208-213. ISBN 978-989-8425-90-4. Available from: https://dx.doi.org/10.5220/0003780902080213.

CHMELÍK, Dominik, Miloš BARTÁK, Jaroslava DUBOVÁ and Julie ROTKOVSKÁ. Glutathione and other antioxidative substances as bioindicators of short- and long-tem responses of in vitro cultivated orchids to high radiation stress. 2012. ISSN 1213-6670.

HEENAN, Peter B, Dagmar F GOEKE, Gary J HOULISTON and Martin LYSÁK. Phylogenetic analyses of ITS and rbcL DNA sequences for sixteen genera of Australian and New Zealand Brassicaceae result in the expansion of the tribe Microlepidieae. Taxon. Bratislava: International Assoc. for Plant Taxonomy, 2012, vol. 61, No 5, p. 970-979. ISSN 0040-0262.

LEXA, Matej, Karel NEJEDLÝ, Lucie NAVRÁTILOVÁ and Marie BRÁZDOVÁ. Prediction of significant cruciform structures from sequence in topologically constrained DNA - a probabilistic modelling approach. In Jan Schier, Carlos Correia, Ana Fred and Hugo Gamboa. Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. Neuveden: SciTePress, 2012, p. 124-130. ISBN 978-989-8425-90-4. Available from: https://dx.doi.org/10.5220/0003705701240130.

SÝKOROVÁ, Eva, Jana FULNEČKOVÁ, Petr MOKROŠ, Jiří FAJKUS, Miloslava FOJTOVÁ and Vratislav PEŠKA. Three TERT genes in Nicotiana tabacum. Chromosome Research. Netherlands: Springer, 2012, vol. 20, No 4, p. 381-394. ISSN 0967-3849. Available from: https://dx.doi.org/10.1007/s10577-012-9282-3.

MANDÁKOVÁ, Terezie, Klaus MUMMENHOFF, Ihsan A AL-SHEHBAZ, Ladislav MUCINA, Andreas MUEHLHAUSEE and Martin LYSÁK. Whole-genome triplication and species radiation in the southern African tribe Heliophileae (Brassicaceae). Taxon. Bratislava: International Assoc. for Plant Taxonomy, 2012, vol. 61, No 5, p. 989-1000. ISSN 0040-0262.

FRANZKE, Andreas, Martin LYSÁK, Ihsan A. AL-SHEHBAZ, Marcus A. KOCH and Klaus MUMMENHOFF. Cabbage family affairs: the evolutionary history of Brassicaceae. TRENDS in Plant Science. London: ELSEVIER SCIENCE LONDON, 2011, vol. 16, No 2, p. 108-116. ISSN 1360-1385. Available from: https://dx.doi.org/10.1016/j.tplants.2010.11.005.

ZIOLKOWSKI, Piotr A., Martin LYSÁK and Waheeb K. HENEEN. Cytogenetic studies in vegetable Brassicas. In Genetics, Genomics and Breeding of Vegetable Brassicas. Enfield: Science Publishers, 2011, p. 257-303, 46 pp. Genetics, Genomics and Breeding of Crop Plants. ISBN 978-1-57808-706-8.

AMBROŽOVÁ, Kateřina, Terezie MANDÁKOVÁ, Petr BUREŠ, Pavel NEUMANN, Ilia J. LEITCH, Andrea KOBLÍŽKOVÁ, Jiří MACAS and Martin LYSÁK. Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies. Annals of Botany. Oxford: Oxford University Press, 2011, vol. 107, No 2, p. 255-268. ISSN 0305-7364. Available from: https://dx.doi.org/10.1093/aob/mcq235.

SCHUBERT, Ingo and Martin LYSÁK. Interpretation of karyotype evolution should consider chromosome structural constraints. Trends in Genetics. Elsevier Trends Journals, 2011, vol. 27, No 6, p. 207-216. ISSN 0168-9525. Available from: https://dx.doi.org/10.1016/j.tig.2011.03.004.

MAJEROVÁ, Eva, Miloslava FOJTOVÁ, Terezie MANDÁKOVÁ and Jiří FAJKUS. Methylation of plant telomeric DNA: what do the results say? Plant Molecular Biology. Springer, 2011, vol. 77, No 6, p. 533-536. ISSN 0167-4412. Available from: https://dx.doi.org/10.1007/s11103-011-9834-5.

GERMAN, Dmitry A., Jason R. GRANT, Martin LYSÁK and Ihsan A. AL-SHEHBAZ. Molecular phylogeny and systematics of the tribe Chorisporeae (Brassicaceae). Plant Systematics and Evolution. Wien: Springer-Verlag, 2011, vol. 294, 1-2, p. 65-86. ISSN 0378-2697. Available from: https://dx.doi.org/10.1007/s00606-011-0452-0.

LYSÁK, Martin and Marcus A. KOCH. Phylogeny, Genome, and Karyotype Evolution of Crucifers (Brassicaceae). Online. In Genetics and Genomics of the Brassicaceae. New York: Springer Science+Business Media, 2011, p. 1-31. Plant Genetics and Genomics: Crops and Models, 9. ISBN 978-1-4419-7117-3. Available from: https://dx.doi.org/10.1007/978-1-4419-7118-0_1.

PROCHÁZKOVÁ SCHRUMPFOVÁ, Petra, Miloslava FOJTOVÁ, Petr MOKROŠ, Klaus D. GRASSER and Jiří FAJKUS. Role of HMGB Proteins in Chromatin Dynamics and Telomere Maintenance in Arabidopsis thaliana. CURRENT PROTEIN & PEPTIDE SCIENCE. BENTHAM SCIENCE PUBL LTD, 2011, vol. 12, No 2, p. 105-111. ISSN 1389-2037.

LYSÁK, Martin. Between Arabidopsis and cabbage: a decade of crucifer cytogenomics. In 10th Gatersleben Research Conference (GRCX) 2010. 2010.

MANDÁKOVÁ, Terezie, Simon JOLY, Martin KRZYWINSKI, Klaus MUMMENHOFF and Martin LYSÁK. Fast diploidization in close mesopolyploid relatives of Arabidopsis. Plant Cell. UNITED STATES: AMER SOC PLANT BIOLOGISTS, 2010, vol. 22, No 7, 14 pp. ISSN 1040-4651.

LYSÁK, Martin and Terezie MANDÁKOVÁ. Genome duplication and reshuffling: an insight from crucifers. In Structural and Functional Diversity of the Eukaryotic Genome. 2010. ISBN 978-80-210-5285-7.

MANDÁKOVÁ, Terezie, Peter HEENAN and Martin LYSÁK. Island species radiation and karyotypic stasis in Pachycladon allopolyploids. BMC Evolutionary Biology. BioMed Central Ltd: London, 2010, vol. 2010, No 10, p. 367-380. ISSN 1471-2148.

LYSÁK, Martin. Past and present patterns of plant genome evolution: an insight from crucifers. In 19th International Sympsium "Biodiversity and Evolutionary Biology" of the German Botanical Society (DBG). 2010.

LYSÁK, Martin, Terezie MANDÁKOVÁ and Eric LACOMBE. Reciprocal and multi-species chromosome BAC painting in crucifers (Brassicaceae). Cytogenetic and Genome Research. Switzerland: Karger, 2010, vol. 129, 1-3, 6 pp. ISSN 1424-8581.

DIERSCHKE, Tom, Terezie MANDÁKOVÁ, Martin LYSÁK and Klaus MUMMENHOFF. A bicontinental origin of polyploid Australian/New Zealand Lepidium species (Brassicaceae)? Evidence from genomic in situ hybridization. Annals of Botany. Oxford: Oxford University Press, 2009, vol. 104, No 4, p. 681-688. ISSN 0305-7364.

LYSÁK, Martin. Comparative Cytogenetics of Wild Crucifers. In Biology and Breeding of Crucifers. USA: CRC Press, Taylor & Francis Group, 2009, p. 177-205. ISBN 978-1-4200-8608-9.

AMBROŽOVÁ, Kateřina, Jiří MACAS, Pavel NEUMANN, Ilia J. LEITCH and Martin LYSÁK. Molecular and cytogenetic analysis of the biggest plant genomes. In Bulletin České společnosti experimentální biologie rostlin a Fyziologické sekce Slovenské botanické společnosti. 2009. ISSN 1213-6670.

LYSÁK, Martin, Terezie MANDÁKOVÁ and Eric SCHRANZ. Polyploidy events and karyotype alterations in the genome evolution of crucifers (Brassicaceae). In 17th International Chromosome Conference. 2009. ISSN 0967-3849.

MANDÁKOVÁ, Terezie and Martin LYSÁK. Studium evoluce karyotypu v čeledi brukvovitých (Brassicaceae) metodou komparativního chromosomálního paintingu (Karyotype evolution in crucifers (Brassicaceae) studied by comparative chromosome painting). In Bulletin České společnosti experimentální biologie rostlin a Fyziologické sekce Slovenské botanické společnosti. 2009. ISSN 1213-6670.

LYSÁK, Martin, Marcus A. KOCH, Jeremy M. BEAULIEU, Armin MEISTER and Ilia J. LIETCH. The dynamic ups and downs of genome size evolution in Brassicaceae. MOLECULAR BIOLOGY AND EVOLUTION. USA: OXFORD UNIV PRESS, 2009, vol. 26, No 1, p. 85-98. ISSN 0737-4038.

DE JONG, Hans, Christiane KIEFER, Eric SCHRANZ, Terezie MANDÁKOVÁ, Martin LYSÁK and Marcus KOCH. The Nature Of Aberrant Chromosomes In Apomictic Boechera Accessions. In Plant & Animal Genomes XVII Conference. 2009.

MANDÁKOVÁ, Terezie and Martin LYSÁK. Unraveling the mesopolyploid history of Australian crucifers (Brassicaceae). In Polyploidy, Hybridization and Biodiversity. 2009.

MANDÁKOVÁ, Terezie and Martin LYSÁK. Chromosomal phylogeny and karyotype evolution in x=7 crucifer species (Brassicaceae). Plant Cell. United States: AMER SOC PLANT BIOLOGISTS, 2008, vol. 20, October, p. 2559-2570. ISSN 1040-4651.

MANDÁKOVÁ, Terezie and Martin LYSÁK. Karyotype Evolution in n=7 Species from Different Crucifer Tribes. In Brassica2008. 2008.

AMBROŽOVÁ, Kateřina, Jiří MACAS, Ilia J. LEITCH and Martin LYSÁK. Molecular analysis of repetitive elements in giant genomes of Fritillaria ( liliaceae). In The Comparative Biology of the Monocotyledons; Systematics and Evolution. 2008. ISBN 978-87-87772-03-7.

MANDÁKOVÁ, Terezie and Zuzana MÜNZBERGOVÁ. Morphometric and genetic differentiation of diploid and hexaploid populations of Aster amellus agg. in a contact zone. PLANT SYSTEMATICS AND EVOLUTION. Austria: Springer Wien, 2008, Neuveden, March, p. 155-170. ISSN 0378-2697.

LYSÁK, Martin, Kwok CHEUNG, Michaela KITSCHKE and Petr BUREŠ. Ancestral Chromosomal Blocks Are Triplicated in Brassiceae Species with Varying Chromosome Number and Genome Size. Plant Physiology. USA: American Society of Plant Physiologists, 2007, vol. 145, No 2, p. 402-410. ISSN 0032-0889.

BUREŠ, Petr, Petr ŠMARDA, Ivana HRALOVÁ, Sara FUENTES-SORIANO, Martin LYSÁK, Radomír ŘEPKA, Klára HELÁNOVÁ, Olga ROTREKLOVÁ, Jana PROCHÁZKOVÁ, Luboš ÚRADNÍČEK and Jana KŮROVÁ. Correlation between GC content ond genome size in plants. Cytometry. New York: International Society for Analytical Cyt, 2007, 71A, No 9, p. 764-764. ISSN 0196-4763.

LYSÁK, Martin. Evolutionary and comparative cytogenetics of the Brassicaceae and Cleomaceae. In Plant Biology &Botany. 2007.

BUREŠ, Petr, Petr ŠMARDA, Ivana HRALOVÁ, Sara FUNES-SORIANO, Martin LYSÁK, Radomír ŘEPKA, Klára HELÁNOVÁ, Olga ROTREKLOVÁ, Jana PROCHÁZKOVÁ, Luboš ÚRADNÍČEK and Jana KŮROVÁ. GC Content in Plant Genomes. In Analytical Cytometry IV. Brno: Czech Society for Analytical Cytometry, 2007, p. 19-20. ISBN 978-80-239-9591-6.

MANDÁKOVÁ, Terezie and Martin LYSÁK. Karyotype evolution in n=7 species from different tribes of the mustard family (Brassicaceae). In Chromosome Research. 2007. ISSN 0967-3849.

LYSÁK, Martin. New insights into comparative phylogenomics of crucifers (Brassicaceae). In Résumés des Communications Orales. 2007.

LYSÁK, Martin. Paleopolyploidy And Karyotype Evolution In Crucifers (Brassicaceae). In Plant &Animal Genome XV. 2007.

FAY, Michael F., Ilia J. LEITCH, Jeremy M. BEAULIEU and Martin LYSÁK. Punctuated genome size evolution in Liliaceae. In Plant Biology & Botany. 2007.

LEITCH, I.J., J.M. BEAULIEU, K. CHEUNG, L. HANSON, Martin LYSÁK and M.F. FAY. Punctuated genome size evolution in Liliaceae. J EVOLUTION BIOL. Oxon: BLACKWELL PUBLISHING, 2007, vol. 20, No 6, p. 2296-2308. ISSN 1010-061X.

KOCH, Marcus A., Christoph DOBEŠ, Christiane KIEFER, Roswitha SCHMICKL, Leoš KLIMEŠ and Martin LYSÁK. Supernetwork identifies multiple events of plastid trnF(GAA) pseudogene evolution in the Brassicaceae. Mol. Biol. Evol. USA: Oxford Univ Press, 2007, vol. 24, No 1, p. 63-73. ISSN 0737-4038.

MANDÁKOVÁ, Terezie and Martin LYSÁK. Unexpected paleopolyploid evolution in Stenopetalum - a genus with the lowest chromosome numbers in the Brassicaceae. In Bulletin České společnosti experimentální biologie rostlin a Fyziologické sekce Slovenské botanické společnosti. Olomouc: Česká společnost experimentální biologie rostlin, 2007, p. 63-64. ISSN 1213-6670.

LYSÁK, Martin and Terezie MANDÁKOVÁ. Unexpected paleopolyploid evolution in Stenopetalum - a genus with the lowest chromosome numbers in the Brassicaceae. In Chromosome Research. Netherlands: Springer, 2007, p. 11-12. ISSN 0967-3849.

LYSÁK, Martin. Diving deeper into the crucifer genomes. In 15 Crucifer Genetics Workshop: Brassica 2006. 2006.

BERR, Alexander, Ales PECINKA, Armin MEISTER, Gregor KRETH, Jorg FUCHS, Frank R. BLATTNER, Martin LYSÁK and Ingo SCHUBERT. Chromosome arrangement and nuclear architecture but not centromeric sequences are conserved between Arabidopsis thaliana and Arabidopsis lyrata. The Plant Journal. England: BLACKWELL PUBLISHING, 2006, Neuveden, No 48, p. 771-783. ISSN 0960-7412.

SCHRANZ, Eric M., Martin LYSÁK and Thomas MITCHELL-OLDS. The ABC’s of comparative genomics in the Brassicaceae: building blocks of crucifer genomes. TRENDS in Plant Science. England: ELSEVIER SCIENCE LONDON, 2006, vol. 11, No 11, p. 535-542. ISSN 1360-1385.

LYSÁK, Martin, A. BERR, A. PECINKA, R. SCHMIDT, K. MCBREEN and I. SCHUBERT. Title: Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species. Proceedings of the National Academy of Sciences of the USA. Washington, 2006, vol. 103, No 13, p. 5224-5229, 5 pp. ISSN 0027-8424.

LYSÁK, Martin and Christian LEXER. Towards the era of comparative evolutionary genomics in Brassicaceae. Plant Systematics and Evolution. Wien: Springer-Verlag, 2006, vol. 259, 2-4, p. 175-198. ISSN 0378-2697.