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ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank (2015)
Anatomy of protein channels (2015)
PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank (2015)
How Does the Methodology of 3D Structure Preparation Influence the Quality of pK(a) Prediction? (2015)
TopKLists: a comprehensive R package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists (2015)
MotiveQuery: Web application for fast detection of biomacromolecular fragments in the entire Protein Data Bank (2015)
MOLE 2.5: Improved Tool for Analysis of Ligand-Accessible Channels (2015)
WebChemistry: a platform for the detection, validation, comparison, and characterization of structural patterns in biomacromolecules (2015)
PatternQuery: Web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank (2015)
ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank (2015)
Combined Proteomics and Transcriptomics Identifies Carboxypeptidase B1 and Nuclear Factor kappa B (NF-kappa B) Associated Proteins as Putative Biomarkers of Metastasis in Low Grade Breast Cancer (2015)
Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance (2015)
Parameter Synthesis by Parallel Coloured CTL Model Checking (2015)
High-Performance Discrete Bifurcation Analysis for Piecewise-Affine Dynamical Systems (2015)
AtomicChargeCalculator: Interactive Web-based calculation of atomic charges in large biomolecular complexes and drug like molecules (2015)
High-quality and universal empirical atomic charges for chemoinformatics applications (2015)
ToPASeq: an R package for topology-based pathway analysis of microarray and RNA-Seq data (2015)
Vyhledávání a validace potenciálních biomarkerů metastazování u nádorů prsu typu luminal A (2015)
Tools and data services registry: a community effort to document bioinformatics resources (2016)
Porovnání výsledků genové exprese pří použití různých anotací genomu (2016)
Beech transcriptome data: “I am stressed!” (2016)
NEEMP – nástroj pro parametrizaci EEM (2016)
Detekce biomolekulárních substruktur pomocí PatternQuery (2016)
Whole genome sequencing of Treponema pallidum DNA directly from human samples (2016)
Clonal cytogenetics changes in progression of multiple myeloma to extramedullary relapse and plasmocellular leukemia: a case report (2016)
Deep insight into secretome and transcriptome of Trichinella spiralis and Trichinela pseudospiralis (2016)
Parametrizace ekvalizace elektronegativity metodou diferenciální evoluce (2016)
A novel panel of proteins associated with lymph node metastasis in low-grade breast cancer (2016)
Aplikace SWATH-MS v nádorovém výzkumu (2016)
Combined proteomics and transcriptomics identifies carboxypeptidase B1 and NF-kappa B associated proteins as putative biomarkers of metastasis in low grade breast cancer (2015)
Parallel SMT-Based Parameter Synthesis with Application to Piecewise Multi-Affine Systems (2016)
High-Performance Symbolic Parameter Synthesis of Biological Models: A Case Study (2016)
Toward Modelling and Analysis of Transient and Sustained Behaviour of Signalling Pathways (2016)
Cytokinins control cell differentiation via regulation of secondary cell wall master switches NST1 and NST3 (2016)
Identification of subtype specific microbiome from tumour tissue RNAseq data in colorectal cancer (2016)
NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges (2016)
DNA Topoisomerase I Gene Copy Number and mRNA Expression Assessed as Predictive Biomarkers for Adjuvant Irinotecan in Stage II/III Colon Cancer (2016)
A Model Checking Approach to Discrete Bifurcation Analysis (2016)
The Eighth Central European Conference “Chemistry towards Biology”: Snapshot (2016)
Loss of Nat4 and its associated histone H4 N-terminal acetylation mediates calorie restriction-induced longevity (2016)
Mutační analýza pacientů s akutní myeloidní leukémií – optimalizace hodnocení sekvenačních dat a předběžné výsledky národní studie. (2016)
Joint analysis of histopathology image features and gene expression in breast cancer (2016)
Structural Bioinformatics Tools for Drug Design: Extraction of Biologically Relevant Information from Structural Databases (2016)
Experiments in Molecular Subtype Recognition Based on Histopathology Images (2016)
Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop (2016)
Human Treponema pallidum 11q/j isolate belongs to subsp. endemicum but contains two loci with a sequence in TP0548 and TP0488 similar to subsp. pertenue and subsp. pallidum, respectively (2017)
Top 10 metrics for life science software good practices [version 1; referees: 2 approved] (2016)
Quo Vadis, Biomacromolecular Structure Quality (2017)
Biomacromolecular structure quality – improvement or stagnation? (2017)
ChrgDescCalc.py – nástroj na výpočet nábojových deskriptorů (2016)
Využití nábojových deskriptorů v chemoinformatice (2016)
Eudiplozoon nipponicum (Monogenea: Diplozoidae): Comparative study of transcriptome and secretome of fish parasite (2017)
Trends in biomacromolecular structure quality (2017)
Encyclopedia of CLL subsets – nový bioinformatický nástroj a unikátní databáze pro výzkum a klinické využití subsetů stereotypních B buněčných receptorů chronické lymfocytární leukemie (2017)
B cell receptor signaling actvity is associated with genomic defects in chronic lymphocytic leukemia (2017)
GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data. (2017)
Do trends in biomacromolecular structure quality inspire optimism? (2017)
The impact of choice of reference gene annotation (2017)
Pithya: A Parallel Tool for Parameter Synthesis of Piecewise Multi-Affine Dynamical Systems (2017)
Detecting Attractors in Biological Models with Uncertain Parameters (2017)
Parameter Synthesis of Biological Models by Model Checking: A Case Study (2017)
PITHYA: High-Performance Parameter Synthesis for Biological Models (2017)
Eudiplozoon nipponicum (Polyopisthocotylea: Diplozoidae): transcriptome and secretome analyses of hematophagous fish parasite (2017)
Epigenetic Control Of Aging In Response To Caloric Restriction (2017)
Trends in quality and properties of biomacromolecular complexes (2017)
Analysis of gene expression and protein synthesis related to hypobiosis of Teladorsagia circumcincta (2017)
Candidate gene molecular markers as tools for analyzing genetic susceptibility to Morbillivirus infection in stranded Cetaceans (2017)
Model Checking Approach to Discrete Bifurcation Analysis (2017)
Formation of Staphylococcus aureus biofilm in the presence of sub-lethal concentrations of disinfectants: a transcriptomic analysis using RNA-seq (2017)
Functional and structural characterisation of 5 missense mutations of the phenylalanine hydroxylase (2017)
Label-free chronopotentiometric glycoprofiling of prostate specific antigen using sialic acid recognizing lectins (2017)
rRNA C-Loops: Mechanical Properties of a Recurrent Structural Motif (2017)
DNA mutation motifs in the genes associated with inherited diseases (2017)
Discrete Bifurcation Analysis with Pithya (2017)
Exploring Trends in Quality of Biomacromolecular Structure Data (2017)
bio.tools Sum (2017)
LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data (2017)
MicroRNA induced by DNA damage response regulate the expression of FOXP1 and therapy response in CLL (2017)
Could nanopore sequencing help us improve genome assembly of Eudiplozoon nipponicum (Polyopisthocotylea, Diplozoidae)? (2017)
Study of structural and elastic properties of DNA mutation motifs using computational methods. (2017)
MicroRNA induced by DNA damage response regulates the expression of FOXP1 and therapy response in CLL (2017)
Four simple recommendations to encourage best practices in research software (2017)
GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data (2017)
GLASS:assisted and standardized assessment of gene variations from Sanger sequence trace data. (2017)
Bioinformatical analysis of chromosomal rearrangement in chromothripsis event using whole transcriptome sequencing data (2017)
ToTem – a tool for automated optimization of variant calling pipelines (2017)
B cell receptor signaling actvity is associated with genomic defects in chronic lymphocytic leukemia (2017)
Promoter methylation of ROR ligand WNTA associates with its expression in chronic lymphocytic leukemia (2017)
Complex genome rearrangements are associated with altered gene expression in chronic lymphocytic leukemia. (2017)
Validation and analyses of biomacromolecular ligand conformations (2017)
The clinical impact of targeted „next-generation“ sequencing in molecular diagnostics of intellectual disabilities and multiple congenital abnormalities (2017)
The clinical utility of array-CGH and targeted NGS in idiopathic intellectual disabilities and developmental delays: a case report of SCN2A p.Ala263Val variant (2017)
Connection of saccharide database UnicarbKb with common databases of molecular structures (2017)
High resolution IgH repertoire analysis reveals fetal liver as the likely origin of life-long, innate B lymphopoiesis in humans (2017)
GLASS (2017)
Mapping and 2D visualization of secondary structure elements in cytochromes (2017)
Automatická anotácia sekundárnych štruktúr v cytochrómoch P450 a hodnotenie ich štruktúrnej podobnosti (2016)
Cytochrome P450 structure anatomy – recognition and analysis of secondary structure elements (2017)
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