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The Orientation and Charge of Water at the Hydrophobic Oil Droplet-Water Interface (2011)
Relation between Molecular Shape and the Morphology of Self-Assembling Aggregates: A Simulation Study (2011)
Receptor-Mediated Endocytosis of Nanoparticles of Various Shapes (2011)
Charge Transfer between Water Molecules As the Possible Origin of the Observed Charging at the Surface of Pure Water (2012)
Aqueous Solutions at the Interface with Phospholipid Bilayers (2012)
Ions at Hydrophobic Aqueous Interfaces: Molecular Dynamics with Effective Polarization. (2012)
Morphology and Kinetics of Self-assembled Peptide Aggregates Using Coarse Grained Simulations (2012)
Self-assembly of Proteins and Peptides in Cellular Environment (2012)
Self-Assembly of Patchy Spherocylinders (2012)
Receptor-mediated endocytosis of nanoparticles of various shapes (2012)
Sodium Dodecyl Sulfate at Water-Hydrophobic Interfaces: A Simulation Study (2012)
Connecting Macroscopic Observables and Microscopic Assembly Events in Amyloid Formation Using Coarse Grained Simulations (2012)
Challenges in Nanoparticle Delivery: Cellular Uptake and Intracellular Escape (2013)
Intracellular Release of Endocytosed Nanoparticles Upon a Change of Ligand-Receptor Interaction (2012)
Composition- and Size-Controlled Cyclic Self-Assembly by Solvent- and C60-Responsive Self-Sorting (2013)
Simulations of cellular uptake of nanoparticles with various shapes (2013)
Self-assembly of amphiphilic peptides and their interaction with membranes (2013)
Faunus - a flexible framework for Monte Carlo simulation (2013)
Double-belt a Novel Structure of Membrane Pore (2014)
Simulations Suggest Possible Novel Membrane Pore Structure (2014)
Double-belt a Novel Structure of Membrane Pore (2014)
Surface Effects on Aggregation Kinetics of Amyloidogenic Peptides (2014)
Double-belt a Novel Structure of Membrane Pore (2014)
Surface Effects on Aggregation Kinetics of Amyloidogenic Peptides (2014)
Surface Effects on Aggregation Kinetics of Amyloidogenic Peptides (2014)
Physics of colloidal particles with heterogeneously patterned surfaces (2014)
Double-belt a Novel Structure of Membrane Pore (2014)
Double-belt a Novel Structure of Membrane Pore (2014)
Stability of Bicelles: A Simulation Study (2014)
Charges at Aqueous Interfaces: Development of Computational Approaches in Direct Contact with Experiment (2014)
Influence of ligand distribution on uptake efficiency (2015)
Quantum Chemical Benchmark Study on 46 RNA Backbone Families Using a Dinucleotide Unit (2015)
Optimal conditions for opening of membrane pore by amphiphilic peptides (2015)
Self-assembly of prolate patchy particles (2015)
Self-assembly of prolate patchy particles (2015)
Influence of ligand distribution on the efficiency of nanoparticle uptake (2016)
Influence of ligand distribution on nanoparticle uptake effciency (2015)
(GM1) Ganglioside Inhibits beta-Amyloid Oligomerization Induced bySphingomyelin (2016)
Anomalous Fibril Interaction with Surfaces (2016)
Anomalous Fibril Interaction with Surfaces (2016)
Peptide Features Determining its Ability of Translocation and Membrane Pore Formation (2016)
Efficiency of Nanoparticle Uptake Influenced by Multivalent Inhibitors or Ligand Distribution (2016)
Peptide Features Determining its Translocation and Pore Formation (2016)
Overexpression of a flower-specific aerolysin-like protein from the dioecious plant Rumex acetosa alters flower development and induces male sterility in transgenic tobacco (2017)
Self-assembled clusters of patchy rod-like molecules (2017)
Design of Multivalent Inhibitors for Preventing Cellular Uptake (2017)
Aggregate Size Dependence of Amyloid Adsorption onto Charged Interfaces (2018)
Behavior of BsoBI endonuclease in the presence and absence of DNA (2018)
Computational characterization of hybrid proteins containing ordered and intrinsically disordered regions (2017)
Synergism of Antimicrobial Frog Peptides Couples to Membrane Intrinsic Curvature Strain. (2018)
Optimal Hydrophobicity and Reorientation of Amphiphilic Peptides Translocating through Membrane (2018)
Computational Molecular Modeling Techniques of Biomacromolecular Systems (2018)
Personalizovaná terapie pacientů s gastroezofageální refluxní chorobou - metodika stanovení genového profilu CYP2C19 (2018)
Implementing efficient concerted rotations using Mathematica and C code (2018)
A beta under stress: the effects of acidosis, Cu2+-binding, and oxidation on amyloid beta-peptide dimers (2018)
Cholesterol Protects the Oxidized Lipid Bilayer from Water Injury: An All-Atom Molecular Dynamics Study (2018)
Physiologically-relevant levels of sphingomyelin, but not GM1, induces a beta-sheet-rich structure in the amyloid-beta(1-42) monomer (2018)
Enterovirus particles expel capsid pentamers to enable genome release (2019)
Dishevelled-3 conformation dynamics analyzed by FRET-based biosensors reveals a key role of casein kinase 1 (2019)
Quantum Chemical Calculations of NMR Chemical Shifts in Phosphorylated Intrinsically Disordered Proteins (2019)
Force Field Comparison of GM1 in a DOPC Bilayer Validated with AFM and FRET Experiments. (2019)
Magainin 2 and PGLa in Bacterial Membrane Mimics I: Peptide-Peptide and Lipid-Peptide Interactions. (2019)
Kink in Helical Peptides Affects Membrane Pore Formation (2019)
Magainin 2 and PGLa in Bacterial Membrane Mimics II: Membrane Fusion and Sponge Phase Formation. (2020)
Oxidatively-mediated in silico epimerization of a highly amyloidogenic segment in the human calcitonin hormone (hCT(15-19)) (2019)
Effects of in vivo conditions on amyloid aggregation (2019)
Synergism of Magainins is Not Coupled to the Formation of a Well-Defined Peptide Pore (2019)
The role of ganglioside GM1 and sphingomyelin in the oligomerisation of beta-amyloid at physiological conditions: a single molecule study (2016)
Toxicita a aktivita antimikrobiálních peptidů (2019)
Choice of Force Field for Proteins Containing Structured and Intrinsically Disordered Regions (2020)
Yeast Spt6 Reads Multiple Phosphorylation Patterns of RNA Polymerase II C-Terminal Domain In Vitro (2020)
Effect of Helical Kink on Peptide Translocation across Phospholipid Membranes (2020)
Effect of membrane composition on DivIVA-membrane interaction. (2020)
Effect of helical kink in antimicrobial peptides on membrane pore formation (2020)
Role of Oxidized Gly25, Gly29, and Gly33 Residues on the Interactions of A beta(1-42) with Lipid Membranes (2020)
Phosphorylation-induced changes in the PDZ domain of Dishevelled 3 (2021)
ROLE OF PROLINE/GLYCINE KINK IN PORE FORMATION BY ANTIMICROBIAL PEPTIDES (2020)
Capsid Structure of Leishmania RNA Virus 1 (2021)
Capsid opening enables genome release of iflaviruses. (2021)
Selecting Collective Variables and Free Energy Methods for Peptide Translocation Across Membranes. (2021)
Advances in Molecular Understanding of α-helical Membrane-Active Peptides. (2021)
Enhanced translocation of amphiphilic peptides across membranes by transmembrane proteins. (2021)
Extraordinary diversity of telomeres, telomerase RNAs and their template regions in Saccharomycetaceae (2021)
The impact of the glycan headgroup on the nanoscopic segregation of gangliosides. (2021)
Cargo Release from Nonenveloped Viruses and Virus-like Nanoparticles: Capsid Rupture or Pore Formation (2021)
Acetylace 7-hydroxy skupiny dibenzocyklooktadienových lignanů zvyšuje inhibici P-glykoproteinu (2021)
Cardiolipin-Containing Lipid Membranes Attract the Bacterial Cell Division Protein DivIVA (2021)
Influence of Substrate Hydrophilicity on Structural Properties of Supported Lipid Systems on Graphene, Graphene Oxides, and Silica (2021)
Magainin 2 and PGLa in Bacterial Membrane Mimics III: Membrane Fusion and Disruption. (2022)
Pyrene-Lablled G-Quadruplexes Derived from the KIT Proto-Oncogene (2022)
Structural analysis of pyrene-labelled G-quadruplexes derived from the KIT proto-oncogene (2022)
Synthesis and Profiling of Highly Selective Inhibitors of Methyltransferase DOT1L Based on Carbocyclic C-Nucleosides (2022)
De novo design of peptides that form transmembrane barrel pores killing antibiotic resistant bacteria (2022)
Magainin 2 and PGLa in bacterial membrane mimics IV: Membrane curvature and partitioning (2022)
Binding of DEP domain to phospholipid membranes: More than just electrostatics (2022)
HOW LARGE MOLECULES CAN ENTER CELL (2022)
Stealthy Player in Lipid Experiments? EDTA Binding to Phosphatidylcholine Membranes Probed by Simulations and Monolayer Experiments (2023)
Efficient Simulations of Solvent Asymmetry Across Lipid Membranes Using Flat-Bottom Restraints (2023)
Elucidating the Mechanisms of Genome Release in Picornaviruses using Cryo-EM and Coarse-Grained Simulations (2023)
Membrane adsorption enhances translocation of antimicrobial peptide buforin 2 (2023)
Designing spheroidal nanoparticles to induce membrane fusion of liposomes (2023)
Multiple factors modulating the formation of toroidal membrane pores (2023)
Model Sugars Right: Improved Interactions of Glycans in All-Atom Molecular Dynamics Simulations (2023)
De novo design of peptides that form transmembrane barrel pores killing antibiotic resistant bacteria (2023)
Amphipathic Helices Can Sense Both Positive and Negative Curvatures of Lipid Membranes (2024)
Phospholipids are imported into mitochondria by VDAC, a dimeric beta barrel scramblase (2023)
Insertases scramble lipids: Molecular simulations of MTCH2 (2024)
Plasma membrane lipid bilayer is druggable: Selective delivery of gemcitabine-squalene nano-medicine to cancer cells (2023)
Optimizing properties of translocation-enhancing transmembrane proteins (2024)
Peptide translocation across asymmetric phospholipid membranes (2024)
Nanoparticle induced fusion of lipid membranes (2024)
Pathways to a Shiny Future: Building the Foundation for Computational Physical Chemistry and Biophysics in 2050 (2024)
Computational Design of Pore-Forming Peptides with Potent Antimicrobial and Anticancer Activities (2024)
Membrane Adsorption Enhances Translocation of Antimicrobial Peptide Buforin 2 (2024)
Sequence and structural determinants of RNAPII CTD phase-separation and phosphorylation by CDK7 (2024)
AFM Spectroscopy for the Study of Lipid Bilayer Stability and Morphology (2024)

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