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Development of Fluorescent Assay for Monitoring of Dehalogenase Activity (2019)
Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme-ligand complexes (2024)
ACCELERATION AND GLOBAL CONVERGENCE OF A FIRST-ORDER PRIMAL-DUAL METHOD FOR NONCONVEX PROBLEMS (2019)
Primal-Dual Proximal Splitting and Generalized Conjugation in Non-smooth Non-convex Optimization (2021)
Predicting protein stability and solubility changes upon mutations: data perspective (2020)
Primal-dual block-proximal splitting for a class of non-convex problems (2020)
FireProt(DB): database of manually curated protein stability data (2021)
Substrate inhibition by the blockage of product release and its control by tunnel engineering (2021)
Tools for computational design and high-throughput screening of therapeutic enzymes (2022)
Computational enzyme design for metabolic engineering (2021)
CalFitter 2.0: Leveraging the power of singular value decomposition to analyse protein thermostability (2022)
MAPityser 2.1 - Analyzátor dat pro mikrofluidní platformu MAPit (2022)
MicroPEX Data Analyser 1.0* (2022)
SoluProtMutDB: A manually curated database of protein solubility changes upon mutations (2022)
Advanced database mining of efficient haloalkane dehalogenases by sequence and structure bioinformatics and microfluidics (2022)
In-depth analysis of biocatalysts by microfluidics: An emerging source of data for machine learning (2023)
PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning (2024)
Exploring new galaxies: Perspectives on the discovery of novel PET-degrading enzymes (2024)
Machine Learning-Guided Protein Engineering (2023)
Learning to design protein-protein interactions with enhanced generalization (2024)
Revealing data leakage in protein interaction benchmarks (2024)
Special Issue on Artificial Intelligence for Synthetic Biology (2024)
A computational workflow for analysis of missense mutations in precision oncology (2024)
GASP: A Pan-Specific Predictor of Family 1 Glycosyltransferase Acceptor Specificity Enabled by a Pipeline for Substrate Feature Generation and Large-Scale Experimental Screening (2024)
CoVAMPnet: Comparative Markov State Analysis for Studying Effects of Drug Candidates on Disordered Biomolecules (2024)
BenchStab: A tool for automated querying of web-based stability predictors (2024)
Machine Learning in Enzyme Engineering (2020)
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