Curriculum Vitae

Curriculum Vitae

Person Identification

• Name and surname: Jan Kmunicek
  Title: Ph.D.
  
  Date of birth: 5 September 1975
  Place of birth: Brno, Czech Republic
  
  Nationality: Czech
  Marital status: Single
  
  

Affiliation and Address

• Institute of Computer Science
  Supercomputing Centre
  Botanicka 68a, 602 00 Brno
  Czech Republic
  
  Phone: +420-5-49 49 21 05
  Fax: +420-5-41 21 27 47
  
  E-mail: kmunicek@ics.muni.cz
  Www: Will be added later.
  
  

Present Position

• Research worker
  
  

Education and Academic Qualifications

• 1997 Bc. Department of Physical Chemistry, Masaryk University, Brno, Czech Republic
  1999 MSc. Department of Physical Chemistry, Masaryk University, Brno, Czech Republic
  2003 Ph.D. Department of Physical Chemistry, Masaryk University, Brno, Czech Republic
  
  

Language Knowledge

• Native: Czech
  Fluently: English (written and spoken)
  
  

Current Research Interests

• Supercomputing and high-performance/throughput computing, grid management and monitoring, grid infrastructure, user support in distributed environment, omputational chemistry, molecular modelling
  
  

Appreciation of Scientific Community

• 1997: Award of Chemistry Section of the Faculty of Science
  1998: Second prize in SVOC `98 contest
  1999: Third prize in SVOC `99 contest
  2000: Honorable Mention Award in Student Poster Ceremony at Fifth International Symposium
  and Exhibition on Environmental Contamination in Central and Eastern Europe
  2003: Award of Rector of Masaryk University
  
  

Foreign Sojourns

• 08-10/1999: EMBL, Heidelberg, Germany (R. C. Wade research group)
  04-05/2000: EMBL, Heidelberg, Germany (R. C. Wade research group)
  09-12/2002: University of Alcalá, Alcalá de Henares, Spain (F. Gago research group)
  
  

Attended Courses

• 11/2000: Humboldt School on Structural Biology, Berlin, Germany
  08/2001: Summer School of Theoretical and Computational Chemistry, Prague, Czech Republic
  
  

Fellowships

• NATO Science Programme
  Comparative Binding Energy (COMBINE) Analysis of the Substrate Specificity of Haloalkane Dehalogenases
  
  

Selected Publications

• KOUŘIL, Daniel and Jan KMUNÍČEK. Do Gridu snadno a rychle - prostředí VOCE (Joining Grid Easily and Quickly -- the VOCE Environment). Zpravodaj ÚVT MU. Brno: Masarykova univerzita, 2006, vol. 16, No 3, p. 6-9. ISSN 1212-0901. URL info
• CHUDOBA, Jiří, Lukáš FIALA, Jan KMUNÍČEK, Jiří KOSINA, Daniel KOUŘIL, Miloš LOKAJÍČEK, Luděk MATYSKA, Miroslav RUDA and Jan ŠVEC. VOCE---A Grid Environment for Central Europe. In Proceedings of the Cracow Grid Workshop 2005. Cracow: Academic Computer Center CYFRONET AGH, Cracow, Poland, 2006, p. 322-328. ISBN 83-915141-5-3. info
• KMUNÍČEK, Jan, Daniel KOUŘIL and Luděk MATYSKA. VOCE - Central European Production Grid Service. Geneve, Switzerland: EGEE User Forum, 2006. Poster session. URL info
• KMUNÍČEK, Jan, Kamila HYNKOVÁ, Tomáš JEDLIČKA, Yuji NAGATA, Ana NEGRI, Frederico GAGO, Rebecca WADE and Jiří DAMBORSKÝ. Quantitative Analysis of Substrate Specificity of Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26. Biochemistry. 2005, vol. 9, No 44, p. 3390-3401. ISSN 0006-2960. URL info
• KULHÁNEK, Petr, Martin PETŘEK and Jan KMUNÍČEK. CHARON System - A Framework for Comfortable Grid Applications & Jobs Management. Pisa, 2005. URL URL info
• KMUNÍČEK, Jan, Petr KULHÁNEK and Martin PETŘEK. CHARON System - Framework for Applications and Jobs Management in Grid Environment. In Cracow Grid Workshop 05. Cracow: Academic Computer Center CYFRONET AGH, Cracow, Poland, 2005, p. 332-340. ISBN 83-915141-5-3. URL info
• DOBES, Petr, Jan KMUNÍČEK, Vladimír MIKEŠ and Jiří DAMBORSKÝ. Binding of Fatty Acids to b-Cryptogein: Quantitative Structure-Activity Relationships and Design of Selective Protein Mutants. Journal of Chemical Information and Modeling. USA, 2004, 44-6, No 44, p. 2126-2132. ISSN 1549-960X. URL info
• KMUNÍČEK, Jan, Michal BOHÁČ, Santos LUENGO, Federico GAGO, Rebecca WADE and Jiří DAMBORSKÝ. Comparative binding energy analysis of haloalkane dehalogenase substrates: modelling of enzyme-substrate complexes by molecular docking and quantum mechanical calculations. Journal of Computer-Aided Molecular Design. 2003, vol. 17, No 5, p. 299-311. ISSN 0920-654X. URL info
• DAMBORSKÝ, Jiří, Jan KMUNÍČEK, Tomáš JEDLIČKA, Santos LUENGO, Federico GAGO, Angel R. ORTIZ and Rebecca C. WADE. Rational re-design of haloalkane dehalogenases guided by comparative binding energy analysis. In Enzyme Functionality: Design, Engineering and Screening. New York, USA: Marcel Decker, 2003, p. 79-96. Protein Structure. info
• OAKLEY, Aaron, Zbyněk PROKOP, Michal BOHÁČ, Jan KMUNÍČEK, Tomáš JEDLIČKA, Marta MONINCOVÁ, Ivana KUTÁ-SMATANOVÁ, Yuji NAGATA, Jiří DAMBORSKÝ and Matthew WILCE. Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product and water mediated inhibition. Biochemistry. 2002, vol. 41, No 15, p. 4847-4855. ISSN 0006-2960. URL info
• KMUNÍČEK, Jan, Santos LUENGO, Federico GAGO, Angel Ramirez ORTIZ, Rebecca WADE and Jiří DAMBORSKÝ. Comparative binding energy (COMBINE) analysis of the substrate specificity of haloalkane dehalogenase from Xanthobacter autotrophicus GJ10. Biochemistry. 2001, vol. 40, No 30, p. 8905-8917. ISSN 0006-2960. URL info

2006/12/15