DSMGT01 Modern Genomic Technologies

Faculty of Medicine
spring 2020
Extent and Intensity
2/0/0. 2 credit(s) (plus 1 for the colloquium). Type of Completion: k (colloquium).
Teacher(s)
Mgr. Vojtěch Bystrý, Ph.D. (lecturer)
MVDr. Boris Tichý, Ph.D. (lecturer)
Panagiotis Alexiou, PhD (lecturer)
Mgr. Václav Hejret (lecturer)
Guaranteed by
prof. RNDr. Šárka Pospíšilová, Ph.D.
Department of Biology – Theoretical Departments – Faculty of Medicine
Contact Person: Mgr. Vojtěch Bystrý, Ph.D.
Supplier department: Central European Institute of Technology
Prerequisites
The course is offered to students of any study field. Knowledge of biology, basic statistics, and basic programming concepts is expected.
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 16 student(s).
Current registration and enrolment status: enrolled: 2/16, only registered: 0/16, only registered with preference (fields directly associated with the programme): 0/16
fields of study / plans the course is directly associated with
Course objectives
Students will get familiar with the principles of next generation sequencing (NGS) technologies and NGS data analysis.
Learning outcomes
After participating on the course student will be able to: 1. plan and prepare a next generation sequencing (NGS) experiment 2. understand NGS data and data analysis results
Syllabus
  • 1.Next generation sequencing (NGS) classification and application NGS experiment planing, library preparation specifics, data analysis results for: 2. DNA Re-sequencing 3. RNA-seq 4. Chip-seq,CLIP-seq 5. Transcriptome/Genome assembly 6. 16s metagenomic sequencing
Literature
  • Koubková L, Vojtěšek B, Vyzula R. Next generation sequencing -  application in clinical practice. Klin Onkol. 2014;27 Suppl 1:S61-8
Teaching methods
Lectures
Assessment methods
Written report or oral presentation
Language of instruction
English
Further comments (probably available only in Czech)
Study Materials
The course is taught annually.
The course is taught: every other week.
Note related to how often the course is taught: Timetable for spring 2020 semester: Mon 13:00–15:00, A35/145, starts on 24 February 2020.
Teacher's information
Vojtěch Bystrý, mail:vojtech.bystry@ceitec.muni.cz Timetable for spring 2020 semester: each second Monday, 13:00 - 15:00, A35/145, starts on 24 February 2020
The course is also listed under the following terms spring 2021, spring 2022, spring 2023.
  • Enrolment Statistics (spring 2020, recent)
  • Permalink: https://is.muni.cz/course/med/spring2020/DSMGT01