PřF:C9925 Soft matter - Course Information
C9925 Introduction to soft matter models of membranes and proteins
Faculty of ScienceSpring 2015
- Extent and Intensity
- 2/0. 2 credit(s) (plus 1 credit for an exam). Type of Completion: zk (examination).
- Teacher(s)
- prof. RNDr. Robert Vácha, PhD. (lecturer)
Mgr. Miroslav Jurásek, Ph.D. (assistant)
Mgr. Ivo Kabelka, Ph.D. (assistant) - Guaranteed by
- prof. RNDr. Robert Vácha, PhD.
National Centre for Biomolecular Research – Faculty of Science
Contact Person: prof. RNDr. Robert Vácha, PhD.
Supplier department: National Centre for Biomolecular Research – Faculty of Science - Timetable
- Tue 14:00–15:50 C04/211
- Prerequisites
- Calculus and physical chemistry at basic university level
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- fields of study / plans the course is directly associated with
- there are 34 fields of study the course is directly associated with, display
- Course objectives
- At the end of the course students should be able to: analyze existing coarse grained models or develop a basic new ones; identify a method and level of coarse graining in existing soft matter models; calculate protein-protein, protein-membrane, and membrane-membrane interaction strengths and their distance dependence; understand methods and phenomena in soft matter;
- Syllabus
- 1) Introduction to coarse grained models
- 2) Ideal chain approximation
- 3) Ideal thin membrane
- 4) Interaction of uncharged membrane and proteins
- 5) Interaction of charged membrane and proteins I
- 6) Interaction of charged membrane and proteins II
- 7) Thermodynamic principles of self assembly
- 8) Langmuir adsorption and grand canonical ensemble
- 9) Dynamics and transport
- 10) Advanced Monte Carlo
- Literature
- Intermolecular and Surface Forces 3rd edition by Jacob N. Israelachvili; Academic Press 2010
- Giant Molecules: Here, There, and Everywhere 2nd edition by Alexander Y. Grosberg et al.; World Scientific Press 2010
- Soft Condensed Matter Physics in Molecular and Cell Biology by W.C.K. Poon and D. Andelman; Taylor & Francis 2006
- Teaching methods
- lectures and class discussions
- Assessment methods
- One multiple choice test - about 20 questions with multiple correct answer possibility. Correct answer is +1 point, wrong answer is -1/2 point. Minimum to pass is 50% of available points.
- Language of instruction
- English
- Further Comments
- Study Materials
The course is taught annually.
- Enrolment Statistics (Spring 2015, recent)
- Permalink: https://is.muni.cz/course/sci/spring2015/C9925