PřF:CG031 Modelling of complexes - Course Information
CG031 Practical course in modelling of protein complexes
Faculty of ScienceSpring 2019
- Extent and Intensity
- 0/2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).
- Teacher(s)
- doc. Mgr. Jan Paleček, Dr. rer. nat. (seminar tutor)
- Guaranteed by
- doc. Mgr. Jan Paleček, Dr. rer. nat.
National Centre for Biomolecular Research – Faculty of Science
Contact Person: doc. Mgr. Jan Paleček, Dr. rer. nat.
Supplier department: National Centre for Biomolecular Research – Faculty of Science - Timetable
- Mon 18. 2. to Fri 17. 5. Fri 9:00–10:50 C04/118
- Prerequisites
- NOW( CG030 Protein complexes )
CG030 - Structure and function of protein complexes, students are advised to take Bi9061 - Bioinformatics course. - Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 10 student(s).
Current registration and enrolment status: enrolled: 0/10, only registered: 0/10, only registered with preference (fields directly associated with the programme): 0/10 - fields of study / plans the course is directly associated with
- Genomics and Proteomics (Eng.) (programme PřF, D-BCH4)
- Genomics and Proteomics (Eng.) (programme PřF, N-BCH)
- Genomics and Proteomics (programme PřF, D-BCH4)
- Genomics and Proteomics (programme PřF, N-BCH)
- Course objectives
- Students should learn about protein structure visualization and analysis. They should be able to model protein structures and dock protein-protein interactions.
- Learning outcomes
- Students will learn about protein structure visualization and analysis. They will be able to model protein structures and dock protein-protein interactions.
- Syllabus
- Introduction of protein structure databases. Editing of pdb files. Protein structure visualization and modeling. Protein docking and protein-protein interaction analysis.
- Literature
- recommended literature
- BEER, de, TAP BERKA, K THORNTON, JM LASKOWSKI and RA. PDBsum additions. Nucleic Acids Research. Oxford: Oxford University Press, 2014, vol. 42, D1, p. "D292"-"D296", 5 pp. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkt940. info
- JIMENEZ-GARCIA, B PONS and C FERNANDEZ-RECIO. pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring. Bioinformatics. Oxford: Oxford University Press, 2013, vol. 29, No 13, p. 1698-1699. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btt262. info
- Teaching methods
- practical demonstrations and practical work with bioinformatics tools.
- Assessment methods
- Assessment of final project.
- Language of instruction
- Czech
- Further comments (probably available only in Czech)
- Study Materials
The course is taught annually.
Information on course enrolment limitations: Garant si vyhrazuje právo vybrat studenty. Přednost mají studenti s předchozí zkušeností s proteinovými strukturami
- Enrolment Statistics (Spring 2019, recent)
- Permalink: https://is.muni.cz/course/sci/spring2019/CG031