Course Information

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).
In-person direct teaching

Teacher(s)

Mgr. Iveta Hodová, Ph.D. (lecturer)
RNDr. Dušan Kadlec, Ph.D. (lecturer)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 13/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

fields of study / plans the course is directly associated with

• Medical Genetics and Molecular Diagnostics (programme PřF, B-BI)
• Medical Genetics and Molecular Diagnostics (programme PřF, B-LGM)
• Zoology (programme PřF, N-ZOL)

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Learning outcomes

At the end of the course students should be able to use information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs, final test

Language of instruction

Czech

Further Comments

Study Materials
The course is taught annually.
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
Mgr. Iveta Hodová, Ph.D. (assistant)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 11/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

fields of study / plans the course is directly associated with

• Medical Genetics and Molecular Diagnostics (programme PřF, B-BI)
• Medical Genetics and Molecular Diagnostics (programme PřF, B-LGM)
• Zoology (programme PřF, N-ZOL)

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Learning outcomes

At the end of the course students should be able to use information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs, final test

Language of instruction

Czech

Further Comments

Study Materials
The course is taught annually.
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
Mgr. Iveta Hodová, Ph.D. (assistant)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 2/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

fields of study / plans the course is directly associated with

• Medical Genetics and Molecular Diagnostics (programme PřF, B-BI)
• Medical Genetics and Molecular Diagnostics (programme PřF, B-LGM)
• Zoology (programme PřF, N-ZOL)

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Learning outcomes

At the end of the course students should be able to use information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs, final test

Language of instruction

Czech

Further Comments

Study Materials
The course is taught annually.
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
Mgr. Iveta Hodová, Ph.D. (assistant)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

fields of study / plans the course is directly associated with

• Medical Genetics and Molecular Diagnostics (programme PřF, B-BI)
• Medical Genetics and Molecular Diagnostics (programme PřF, B-LGM)
• Zoology (programme PřF, N-ZOL)

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Learning outcomes

At the end of the course students should be able to use information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs, final test

Language of instruction

Czech

Further Comments

Study Materials
The course is taught annually.
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
Mgr. Iveta Hodová, Ph.D. (assistant)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Prerequisites (in Czech)

Bi2302 Zoological microtechnique

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 1/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

fields of study / plans the course is directly associated with

• Medical Genetics and Molecular Diagnostics (programme PřF, B-BI)
• Medical Genetics and Molecular Diagnostics (programme PřF, B-LGM)
• Zoology (programme PřF, N-ZOL)

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Learning outcomes

At the end of the course students should be able to use information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs, final test

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
Mgr. Iveta Hodová, Ph.D. (assistant)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Prerequisites (in Czech)

Bi2302 Zoological microtechnique

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 1/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

fields of study / plans the course is directly associated with

• Medical Genetics and Molecular Diagnostics (programme PřF, B-BI)
• Medical Genetics and Molecular Diagnostics (programme PřF, B-LGM)
• Zoology (programme PřF, N-ZOL)

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Learning outcomes

At the end of the course students should be able to use information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs, final test

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
Mgr. Iveta Hodová, Ph.D. (assistant)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Prerequisites (in Czech)

Bi2302 Zoological microtechnique

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

fields of study / plans the course is directly associated with

• Medical Genetics and Molecular Diagnostics (programme PřF, B-BI)

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test, colloquium

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
Mgr. Iveta Hodová, Ph.D. (assistant)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Prerequisites (in Czech)

Bi2302 Zoological microtechnique

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

fields of study / plans the course is directly associated with

• Medical Genetics and Molecular Diagnostics (programme PřF, B-BI)

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test, colloquium

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
Mgr. Iveta Hodová, Ph.D. (assistant)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Prerequisites (in Czech)

Bi2302 Zoological microtechnique

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

fields of study / plans the course is directly associated with

• Medical Genetics and Molecular Diagnostics (programme PřF, B-BI)

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test, colloquium

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
Mgr. Iveta Hodová, Ph.D. (assistant)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Prerequisites (in Czech)

Bi2302 Zoological microtechnique

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

fields of study / plans the course is directly associated with

• Medical Genetics and Molecular Diagnostics (programme PřF, B-BI)

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test, colloquium

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Prerequisites (in Czech)

Bi2302 Zoological microtechnique

Course Enrolment Limitations

The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

fields of study / plans the course is directly associated with

• Medical Genetics and Molecular Diagnostics (programme PřF, B-BI)

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test, colloquium

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test, colloquium

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)

Guaranteed by

Mgr. Iveta Hodová, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.
Supplier department: Department of Botany and Zoology – Biology Section – Faculty of Science

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test,colloquium

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 3 credit(s). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)

Guaranteed by

RNDr. Božena Koubková, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test,colloquium

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 3 credit(s). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
RNDr. Božena Koubková, Ph.D. (assistant)

Guaranteed by

RNDr. Božena Koubková, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test,colloquium

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 3 credit(s). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
RNDr. Božena Koubková, Ph.D. (assistant)

Guaranteed by

RNDr. Božena Koubková, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test,colloquium

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 3 credit(s). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
RNDr. Božena Koubková, Ph.D. (assistant)

Guaranteed by

RNDr. Božena Koubková, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• Purves, Dale: Why we see what we do: an empirical theory of vision, ISBN: 0-87893-752-8

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test,colloquium

Language of instruction

Czech

Further Comments

Study Materials
The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
RNDr. Božena Koubková, Ph.D. (assistant)

Guaranteed by

RNDr. Božena Koubková, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.

Timetable

Tue 15:00–16:50 BR3

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The subject gives information about acquiring of images, documentation and image analysis in biology. The basic knowledge of microscopic methods (bright field and fluorescence microscopy) is highly recommended. The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal. Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation. Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects. Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Language of instruction

Czech

Further Comments

Study Materials

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
RNDr. Božena Koubková, Ph.D. (assistant)

Guaranteed by

RNDr. Božena Koubková, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.

Timetable

Wed 7:00–8:50 BR3

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The subject gives information about acquiring of images, documentation and image analysis in biology. The basic knowledge of microscopic methods (bright field and fluorescence microscopy) is highly recommended. The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal. Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation. Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects. Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Language of instruction

Czech

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 2 credit(s). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
RNDr. Božena Koubková, Ph.D. (assistant)

Guaranteed by

RNDr. Božena Koubková, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.

Timetable

Fri 18. 11. 13:00–17:50 A,01026, Fri 25. 11. 13:00–17:50 A,01026, Fri 2. 12. 13:00–17:50 A,01026

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The subject gives information about acquiring of images, documentation and image analysis in biology. The basic knowledge of microscopic methods (bright field and fluorescence microscopy) is highly recommended. The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal. Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation. Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects. Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Language of instruction

Czech

Bi4070 Image Analysis and Microphotography in Biology

The information about the term Autumn 2011 - acreditation is not made public

Extent and Intensity

2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
RNDr. Božena Koubková, Ph.D. (assistant)

Guaranteed by

RNDr. Božena Koubková, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test,colloquium

Language of instruction

Czech

Further Comments

The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 3 credit(s). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
RNDr. Božena Koubková, Ph.D. (assistant)

Guaranteed by

RNDr. Božena Koubková, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The main objectives of this subject can be summarized as follows:
to gives information about acquiring of images, documentation and image analysis in biology; to extend basic knowledge of microscopic methods (bright field and fluorescence microscopy; to learn the principles of manual and automatic measurements and evaluation of image data in biology.
The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal.
• Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation.
• Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects.
• Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Literature

• PURVES, Dale and R.BEAU LOTTO. Why we see what we do: An Empirical Theory of Vision. Sinauer Associates, Inc., 2003, 260 pp. ISBN 0-87893-752-8. info

Teaching methods

Theoretical lectures, practice presentation, class discussion

Assessment methods

lectures (attendance is recommended), class discussion, optional excursion at expert labs final test,colloquium

Language of instruction

Czech

Further Comments

The course is taught in blocks.

Bi4070 Image Analysis and Microphotography in Biology

Extent and Intensity

2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).

Teacher(s)

RNDr. Dušan Kadlec, Ph.D. (lecturer)
RNDr. Božena Koubková, Ph.D. (assistant)

Guaranteed by

RNDr. Božena Koubková, Ph.D.
Department of Botany and Zoology – Biology Section – Faculty of Science
Contact Person: RNDr. Dušan Kadlec, Ph.D.

Prerequisites (in Czech)

Bi2302 Zoology microtechnique

Course Enrolment Limitations

The course is offered to students of any study field.
The capacity limit for the course is 60 student(s).
Current registration and enrolment status: enrolled: 0/60, only registered: 0/60, only registered with preference (fields directly associated with the programme): 0/60

Course objectives

The subject gives information about acquiring of images, documentation and image analysis in biology. The basic knowledge of microscopic methods (bright field and fluorescence microscopy) is highly recommended. The lecture is oriented to applications - mathematical knowledge is not required.

Syllabus

• Recent devices for documentation of image, TV and digital cameras, digitalization of signal. Grabbing and storage of image data, basic methods of manual and automatic measurement of biological objects, annotation. Preprocessing, enhancement and segmentation of image, binary editor. Classification of objects. Use of image analysis in pathology, toxicology (Comet Assay) and cytogenetics (fluorescence in situ hybridization, comparative genomic hybridization, karyotyping of chromosomes).

Language of instruction

Czech

Further Comments

The course is taught in blocks.

• Enrolment Statistics (recent)