C2110 UNIX and programming

Faculty of Science
Autumn 2011
Extent and Intensity
0/2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: k (colloquium).
Teacher(s)
RNDr. Petr Kulhánek, Ph.D. (lecturer)
Mgr. Alexej Kulaš (seminar tutor)
Mgr. Zora Střelcová, Ph.D. (seminar tutor)
Ing. Tomáš Trnka, Ph.D. (seminar tutor)
Guaranteed by
RNDr. Petr Kulhánek, Ph.D.
National Centre for Biomolecular Research – Faculty of Science
Timetable of Seminar Groups
C2110/01: Tue 14:00–15:50 C04/118, A. Kulaš, P. Kulhánek, Z. Střelcová
C2110/02: Tue 16:00–17:50 C04/118, P. Kulhánek, Z. Střelcová, T. Trnka
Prerequisites
Basic work with PC (for example MS Windows XX, Word, Excel)
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 42 student(s).
Current registration and enrolment status: enrolled: 0/42, only registered: 0/42, only registered with preference (fields directly associated with the programme): 0/42
fields of study / plans the course is directly associated with
Course objectives
The seminar is providing an alternative for widely spread MS Windows environment. At the end of the course students should have the deeper knowledge of the programs that they are working with and to their own applicationcreation. Knowledge obtained in this seminar are necessary groundwork for computational chemistry and molecular modelling and eventually for further studies involving compiled languages such is C/C++.
Syllabus
  • 1. Cluster WOLF (structure, usage rules, administrators)
  • 2. Login (local and remote login, display export, password change)
  • 3. Program equipment (system applications, scientific applications)
  • 4. Text editors (vi, graphical text editors)
  • 5. Command line (terminals, structure, history and automatic completition)
  • 6. File system (structure, absolute and relative paths, permissions, special files, disk volumes)
  • 7. Commands (manual pages, overview of commands)
  • 8. Processes (processes, standard input and output, redirections, pipes)
  • 9. Introduction into scripting (what is scripting, advantages and disadvantages, script execution)
  • 10. Scptiong in Bash (variables, basic controlling constructions)
  • 11. Scripting in GNUPlot (2D and 3D graph drawing, interactive versus non-interactive mode)
  • 12. Scripting in AWK (basic construction, simple text file processing)
  • 13. Application of scripting (analysis of free energy calculations, students projects)
Literature
  • HAHN, Harley and Peter NORTON. Průvodce UNIXEM od Petera Nortona : Jak komunikovat s UNIXEM, jak UNIX ukládá a zobrazuje informace, používání unixového systému souborů, práce s editorem vi : Peter Norton's Guide to UNIX (Orig.). 1.vyd. Brno: UNIS, 1993, XXIV, 562. info
  • BRANDEJS, Michal. UNIX - Linux : praktický průvodce. 1. vyd. Praha: Grada, 1996, 340 s. ISBN 8071691704. info
  • PETRLÍK, Lukáš. Jemný úvod do systému UNIX. 1. vyd. České Budějovice: Kopp, 1995, 189 s. ISBN 80-85828-28-6. info
Teaching methods
exercising practical examples, class discussion
Assessment methods
class exercises in a computer room, individual consultations with a teacher, homeworks, final project and written test, colloquium
Language of instruction
Czech
Follow-Up Courses
Further Comments
Study Materials
The course is taught annually.
The course is also listed under the following terms Autumn 2007 - for the purpose of the accreditation, Spring 2000, Autumn 2010 - only for the accreditation, Spring 2001, Spring 2002, Spring 2003, Spring 2004, Spring 2005, Spring 2006, Spring 2007, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017, Autumn 2018, Autumn 2019, Autumn 2020, autumn 2021, Autumn 2022, Autumn 2023, Autumn 2024.
  • Enrolment Statistics (Autumn 2011, recent)
  • Permalink: https://is.muni.cz/course/sci/autumn2011/C2110