VLLM0522c Medical Microbiology II - practice

Faculty of Medicine
Autumn 2012
Extent and Intensity
0/3/0. 2 credit(s). Type of Completion: z (credit).
Teacher(s)
MUDr. Ondřej Zahradníček (lecturer)
MUDr. Lenka Černohorská, Ph.D. (seminar tutor)
Mgr. Monika Dvořáková Heroldová, Ph.D. (seminar tutor)
Ing. Veronika Holá, Ph.D. (seminar tutor)
Mgr. Martina Mahelová, Ph.D. (seminar tutor)
Mgr. Barbora Mališová, Ph.D. (seminar tutor)
Mgr. Tereza Peroutková (seminar tutor)
prof. MUDr. Filip Růžička, Ph.D. (seminar tutor)
MUDr. Alena Siváková (seminar tutor)
Mgr. Petra Šišková, Ph.D. (seminar tutor)
doc. MUDr. Vladana Woznicová, Ph.D. (seminar tutor)
Ing. Magdalena Flasarová (assistant)
Iva Holešovská (assistant)
Guaranteed by
prof. MUDr. Filip Růžička, Ph.D.
Department of Microbiology – Institutions shared with St. Anne's Faculty Hospital – Faculty of Medicine
Contact Person: MUDr. Ondřej Zahradníček
Supplier department: Department of Microbiology – Institutions shared with St. Anne's Faculty Hospital – Faculty of Medicine
Timetable of Seminar Groups
VLLM0522c/01_02: Wed 7:30–10:00 MiÚ N02112, P. Šišková
VLLM0522c/03_04: Wed 10:20–12:50 MiÚ N02112, M. Dvořáková Heroldová
VLLM0522c/05_06: Fri 7:30–10:00 MiÚ N02112, O. Zahradníček
VLLM0522c/07_08: Fri 10:20–12:50 MiÚ N02112, O. Zahradníček
VLLM0522c/09_10: Mon 7:30–10:00 MiÚ N02112, L. Černohorská
VLLM0522c/11_12: Mon 10:20–12:50 MiÚ N02112, O. Zahradníček
VLLM0522c/13_14: Tue 7:30–10:00 MiÚ N02112, O. Zahradníček
VLLM0522c/15_16: Tue 10:20–12:50 MiÚ N02112, M. Dvořáková Heroldová
VLLM0522c/17_18: Thu 7:30–10:00 MiÚ N02112, T. Peroutková
VLLM0522c/19_20: Thu 10:20–12:50 MiÚ N02112, M. Mahelová
VLLM0522c/30_32: No timetable has been entered into IS. O. Zahradníček
VLLM0522c/31_33: No timetable has been entered into IS. O. Zahradníček
Prerequisites
VSBC0221p Biochemistry I -lect. && VLLM0421c Med.Microbiol. && VSET021 Medical Ethics I && ( VSLT0221s Bas. Med. Terminol. II -s || VSLT011s Bas. Med. Terminology -l ) && ZC041 Handling chemical substances
Necessary for subject absolution is knowledge of topics from VLLM0421c. This knowledge is considered obvious and topics of first semester will not be explained repeatedly
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
fields of study / plans the course is directly associated with
Course objectives
At the end of the course student is able
* to understand microbial findings in different localisations
* to understand the difference between common microbial flora, temporary findings, contaminants and pathogens in various localisations
* to understand what infections are rare and what are the most common
* to know basics of diagnostic and therapeutic approach in the most typical microbial disease; here, basis is only supposed, more enlargement is supposed in other subjects, namely Infectology

Namely student would know normal flora (if it does exist)/transitory findings/contaminants/pathogens in
* individual parts of upper and lower respiratory ways, lungs and middle ear
* different parts of gastroitestinal tract, livers, bile bladder and pancreas
* individual parts of uropoetic system
* individual parts of reproductive system
* individual parts of central and peripherial neural system
* bloodstream, bones, muscles and different tissuess
* skin, eyes, extarnal ear

Student would also know specific problems of microbial infections
* during pregnancy and delivery and during first days after delivery
* in hospitalized, especially immunocompromised persons (healthcare associated infections)
Student should also have a basic survey in
* problematics of biofilm detection (including testing of effectivity of antibiotics to biofilm)
* basic processi of clinical microbiology (indication, sampling, material transport, specimen processing, result releasing, result interpretation)

Those interested in deeper knowledge in antibiotic problematic and clinical microbiology may later register to the subject VSAT081 (Basics of antimicrobial therapy)
Syllabus
  • Curriculum of lessons in Medical Microbiology II (3rd year, autumn term)
  • Practical lessons
  • P01 Diagnostics of staphylococci
  • P02 Diagnostics of streptococci
  • P03 Diagnostics of other G+ bacteria
  • P04 Diagnostics of enterobacteriaceae
  • P05 Diagnostics of G- bacteria II
  • P06 Diagnostics of G- bacteria III
  • P07 Diagnostics of anaerobic bacteria
  • P08 Diagnostics of acid-fast bacteria
  • P09 Diagnostics of spiral bacteria
  • P10 Diagnostics of fungi
  • P11 Introduction to biofilm problematic in bacteriological diagnostics
  • P12 Clinical microbiology I
  • P13 Clinical microbiology II
  • P14 Review
  • Teacher informs students about eventual imparities
Literature
  • VOTAVA, Miroslav. Lékařská mikrobiologie obecná. (General Medical Microbiology.). 1st ed. Brno: Neptun, 2001, 247 pp. ISBN 80-902896-2-2. info
  • VOTAVA, Miroslav. Lékařská mikrobiologie speciální (Medical microbiology special). 1st ed. Brno: NEPTUN, Březová 18, 637 00 Brno, 2003, 495 pp. ISBN 80-902896-6-5. info
  • VOTAVA, Miroslav, Filip RŮŽIČKA, Vladana WOZNICOVÁ, Lenka ČERNOHORSKÁ, Milada DVOŘÁČKOVÁ, Monika DVOŘÁKOVÁ HEROLDOVÁ, Veronika HOLÁ and Ondřej ZAHRADNÍČEK. Lékařská mikrobiologie: Vyšetřovací metody (Medical Microbiology: Laboratory Procedures). 1st ed. Brno: Neptun, 2010, 495 pp. ISBN 978-80-86850-04-7. info
  • GREENWOOD, David. Lékařská mikrobiologie : přehled infekčních onemocnění : patogeneze, imunita, laboratorní diagnostika a epidemiologie. 1. vyd. Praha: Grada Publishing, 1999, 686 s. ISBN 80-7169-365-0. info
  • BEDNÁŘ, Marek. Lékařská mikrobiologie : bakteriologie, virologie, parazitologie. 1. vyd. Praha: Marvil, 1996, 558 s. info
  • RULÍK, Martin, Veronika HOLÁ, Filip RŮŽIČKA, Miroslav VOTAVA, Dana BAUDIŠOVÁ, Jiří GALLO, Simona KAPRÁLOVÁ, Kateřina KOHUŠOVÁ, Dagmar KOUKALOVÁ, Václav KŮDELA, Jiří MIKEŠ, Radko NOVOTNÝ, Martina SIGLOVÁ, Věra TORŠOVÁ and Jiří ZIMÁK. Mikrobiální biofilmy (Microbial Biofilms). 1. vydání. Olomouc: Univerzita Palackého v Olomouci, 2011, 448 pp. Monografie. ISBN 978-80-244-2747-8. info
  • Medical microbiology : A guide to microbial infections: Pathogenesis, immunity, laboratory diagnosis and control. Edited by David Greenwood - Richard C. B. Slack - John F. Peutherer - Barer M. 17th ed. Edinburgh: Churchill Livingstone, 2007, 738 s. ISBN 978-0-443-10209-7. info
  • MURRAY, Patrick R., Ken S. ROSENTHAL and George S., et al. KOBAYASHI. Medical microbiology. 6th ed. St. Louis: Mosby, 2008, 960 pp. ISBN 0-323-05470-6. info
  • GOERING, R., ET AL. Mims’ Medical Microbiology, 4th. ed. Edited by Cedric A. Mims. Mosby, 2007. info
  • BJARNSHOLT, Thomas, Claus MOSER and Niels HØIBY. Biofilm Infections. Springer, 2011. ISBN 978-1-4419-6084-9. e-book info
  • Pro české studium jsou základní tituly 1, 2 a protokoly z IS MU, ostatní jsou doplňkové. For English study, title No. 7 is essential, plus protocoles on IS MU. Titles No. 8 and 9 are supplementary.
Teaching methods
practical training
self-study with e-learning materiasls
Assessment methods
Conditions for credits:
(1) absolving all practicals, with following notes:
- two justified absences or absences approved by teacher are allowed; students are obliged to show that they completed the knowledge (by showing regularly filled-in protocol and eventually also showing the knowledge of the missed practical session)
- more absences than two (although justified!) require a substitution; substitutions in the week of tuition may be performed without formalities with respect with the capacity of the room, other susbsitutions (e. g. after the end of the semester) are possible only exceptionally and after agreement with a teacher
- not justified absences are not allowed (EXTRA PAYMENT IS REQUIRED FOR EVENTUAL SUBSTITUTION!!!)
(2) complete laboratory protocol (signed by the teacher; teacher would not sign a protocol that is not satisfactory; if so, student has to redo it)
(3) succesfully filled in ROPOT questions to all topics (the limit for "succesfully" filled in questions is available for each set of questions individually)
(4) succesfully written credit test, date of the credit test will be declared in time.
Language of instruction
Czech
Follow-Up Courses
Further comments (probably available only in Czech)
Study Materials
Information on completion of the course: Podmínky zápočtu jsou uvedeny v Doplňkových údajích k předmětu
The course is taught annually.
Listed among pre-requisites of other courses
Teacher's information
http://www.medmicro.info
The course is also listed under the following terms Autumn 2000, Autumn 2001, Autumn 2002, Autumn 2003, Autumn 2004, Autumn 2005, Autumn 2006, Autumn 2007, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, Autumn 2017, autumn 2018, autumn 2019, autumn 2020, autumn 2021, autumn 2022, autumn 2023, autumn 2024.
  • Enrolment Statistics (Autumn 2012, recent)
  • Permalink: https://is.muni.cz/course/med/autumn2012/VLLM0522c